| Clone Name | FLbaf79c15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058482.1| Oryza sativa (japonica cultivar-group) Os03g0856200 (Os03g0856200) mRNA, partial cds Length = 3382 Score = 438 bits (221), Expect = e-119 Identities = 395/453 (87%) Strand = Plus / Plus Query: 87 aagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgagaggttc 146 |||||||| || || ||||||||| |||||||||| |||||||||||||||||| | ||| Sbjct: 119 aagatgatactagcggtgctcttctccaactccgacggcaacatcctcatcgagcgcttc 178 Query: 147 catggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggcgcc 206 ||||| || || |||||||| ||||||||||||| || |||||||||||||| |||||| Sbjct: 179 catggtgttcccgcggaggaaaggctgcactggcgttctttcctcgtcaagcttggcgcc 238 Query: 207 gagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtctcc 266 || |||||||||||||||||| ||||||||||||||| || || |||||||| ||||| Sbjct: 239 gacaacctcaagggggccaagaacgaggagctcctcgttgcctctcacaagtccgtctct 298 Query: 267 attgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatatgat 326 ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 299 attgtttatacaatgattggggatgtctgcctgtacattgttggcaaggatgaatatgat 358 Query: 327 gagcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgtgcg 386 |||||||||||| | |||||||| || || | || ||||| ||||||||||| |||| | Sbjct: 359 gagcttgctctggccgaggtgatatttgcaatcacatcggcagtgaaggatgtatgtggg 418 Query: 387 aaaccacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgccttgac 446 ||||| || || ||| | |||||||| ||||| |||||||||||||| |||||||||| Sbjct: 419 aaaccgcctacggagaggctcttccttgacaaatacgggaggatctgcttgtgccttgat 478 Query: 447 gagatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctgatc 506 ||||| |||||| |||| ||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 479 gagattgtttggaagggtctgctggagaacacggagaaggacagagtccggaggttgatc 538 Query: 507 aggctcaagcccccagtggagccatgatttttt 539 ||||| ||||| || || ||||||||||||||| Sbjct: 539 aggctaaagccgcccgttgagccatgatttttt 571
>dbj|AK058786.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E01, full insert sequence Length = 706 Score = 438 bits (221), Expect = e-119 Identities = 395/453 (87%) Strand = Plus / Plus Query: 87 aagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgagaggttc 146 |||||||| || || ||||||||| |||||||||| |||||||||||||||||| | ||| Sbjct: 97 aagatgatactagcggtgctcttctccaactccgacggcaacatcctcatcgagcgcttc 156 Query: 147 catggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggcgcc 206 ||||| || || |||||||| ||||||||||||| || |||||||||||||| |||||| Sbjct: 157 catggtgttcccgcggaggaaaggctgcactggcgttctttcctcgtcaagcttggcgcc 216 Query: 207 gagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtctcc 266 || |||||||||||||||||| ||||||||||||||| || || |||||||| ||||| Sbjct: 217 gacaacctcaagggggccaagaacgaggagctcctcgttgcctctcacaagtccgtctct 276 Query: 267 attgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatatgat 326 ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 277 attgtttatacaatgattggggatgtctgcctgtacattgttggcaaggatgaatatgat 336 Query: 327 gagcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgtgcg 386 |||||||||||| | |||||||| || || | || ||||| ||||||||||| |||| | Sbjct: 337 gagcttgctctggccgaggtgatatttgcaatcacatcggcagtgaaggatgtatgtggg 396 Query: 387 aaaccacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgccttgac 446 ||||| || || ||| | |||||||| ||||| |||||||||||||| |||||||||| Sbjct: 397 aaaccgcctacggagaggctcttccttgacaaatacgggaggatctgcttgtgccttgat 456 Query: 447 gagatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctgatc 506 ||||| |||||| |||| ||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 457 gagattgtttggaagggtctgctggagaacacggagaaggacagagtccggaggttgatc 516 Query: 507 aggctcaagcccccagtggagccatgatttttt 539 ||||| ||||| || || ||||||||||||||| Sbjct: 517 aggctaaagccgcccgttgagccatgatttttt 549
>dbj|AK120953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038P17, full insert sequence Length = 3386 Score = 432 bits (218), Expect = e-118 Identities = 395/454 (87%) Strand = Plus / Plus Query: 86 gaagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgagaggtt 145 ||||||||| || || ||||||||| |||||||||| |||||||||||||||||| | || Sbjct: 123 gaagatgatactagcggtgctcttctccaactccgacggcaacatcctcatcgagcgctt 182 Query: 146 ccatggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggcgc 205 |||||| || || |||||||| ||||||||||||| || |||||||||||||| ||||| Sbjct: 183 ccatggtgttcccgcggaggaaaggctgcactggcgttctttcctcgtcaagcttggcgc 242 Query: 206 cgagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtctc 265 ||| |||||||||||||||||| ||||||||||||||| || | |||||||| ||||| Sbjct: 243 cgacaacctcaagggggccaagaacgaggagctcctcgttgcccctcacaagtccgtctc 302 Query: 266 cattgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatatga 325 ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 303 tattgtttatacaatgattggggatgtctgcctgtacattgttggcaaggatgaatatga 362 Query: 326 tgagcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgtgc 385 ||||||||||||| | |||||||| || || | || ||||| ||||||||||| |||| Sbjct: 363 tgagcttgctctggccgaggtgatatttgcaatcacatcggcagtgaaggatgtatgtgg 422 Query: 386 gaaaccacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgccttga 445 |||||| || || ||| | |||||||| ||||| |||||||||||||| |||||||||| Sbjct: 423 gaaaccgcctacggagaggctcttccttgacaaatacgggaggatctgcttgtgccttga 482 Query: 446 cgagatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctgat 505 ||||| |||||| |||| ||||||||||||||||||||||||| ||||||||| |||| Sbjct: 483 tgagattgtttggaagggtctgctggagaacacggagaaggacagagtccggaggttgat 542 Query: 506 caggctcaagcccccagtggagccatgatttttt 539 |||||| ||||| || || ||||||||||||||| Sbjct: 543 caggctaaagccgcccgttgagccatgatttttt 576
>gb|DQ244166.1| Zea mays clone 2704 mRNA sequence Length = 706 Score = 381 bits (192), Expect = e-102 Identities = 384/448 (85%) Strand = Plus / Plus Query: 89 gatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgagaggttcca 148 |||||| || ||||||||||||||||||||||| || |||||||| ||||| | ||||| Sbjct: 73 gatgatactggccgtgctcttcgccaactccgatggaaacatccttgtcgagcgattcca 132 Query: 149 tggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggcgccga 208 ||| || || ||||||||| |||| ||||||||||||||||| || |||||||| |||| Sbjct: 133 tggggttcccgcggaggagaggctccactggcgctccttcctggtgaagctcggatccga 192 Query: 209 gaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtctccat 268 ||||||||| ||| ||||| ||||||||||| ||| || ||||||||||| || || || Sbjct: 193 gaacctcaaagggtccaagaacgaggagctccacgttgcctcccacaagtctgtgtctat 252 Query: 269 tgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatatgatga 328 ||| ||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 253 tgtttataccacggtcggggatgtctgcctctacattgttggcaaggatgaatatgatga 312 Query: 329 gcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgtgcgaa 388 ||||||| || | ||||||||||| || |||| || || || |||||||| |||||||| Sbjct: 313 gcttgctttggctgaggtgatctttgcaattacatcagcagtcaaggatgtttgtgcgaa 372 Query: 389 accacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgccttgacga 448 ||| || ||||||||||||||||| ||||| |||||||||||||| |||||||||| || Sbjct: 373 acctcctaccgagcgcctcttccttgacaaatacgggaggatctgcttgtgccttgatga 432 Query: 449 gatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctgatcag 508 ||| |||||| |||||||||| || ||||||||||| ||||| || ||||| |||| || Sbjct: 433 gattgtttggaaggggttgcttgaaaacacggagaaagacagagtgaggaggttgattag 492 Query: 509 gctcaagcccccagtggagccatgattt 536 || |||||||| |||||||||| |||| Sbjct: 493 actaaagccccctgtggagccataattt 520
>gb|BT017656.1| Zea mays clone EL01N0440C07.c mRNA sequence Length = 811 Score = 367 bits (185), Expect = 4e-98 Identities = 384/449 (85%), Gaps = 1/449 (0%) Strand = Plus / Plus Query: 89 gatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgagaggttcca 148 |||||| || ||||||||||||||||||||||| || |||||||| ||||| | ||||| Sbjct: 82 gatgatactggccgtgctcttcgccaactccgatggaaacatccttgtcgagcgattcca 141 Query: 149 tggcgtcccggcggaggagcggctgcac-tggcgctccttcctcgtcaagctcggcgccg 207 ||| || || ||||||||| |||| ||| |||||||||||||| || |||||||| ||| Sbjct: 142 tggggttcccgcggaggagaggctccacgtggcgctccttcctggtgaagctcggatccg 201 Query: 208 agaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtctcca 267 |||||||||| ||| ||||| ||||||||||| ||| || ||||||||||| || || | Sbjct: 202 agaacctcaaagggtccaagaacgaggagctccacgttgcctcccacaagtctgtgtcta 261 Query: 268 ttgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatatgatg 327 |||| ||||||| | ||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 262 ttgtttataccacggtcggggatgtctgcctctacattgttggcaaggatgaatatgatg 321 Query: 328 agcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgtgcga 387 |||||||| || | ||||||||||| || |||| || || || |||||||| ||||||| Sbjct: 322 agcttgctttggctgaggtgatctttgcaattacatcagcagtcaaggatgtttgtgcga 381 Query: 388 aaccacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgccttgacg 447 |||| || ||||||||||||||||| ||||| |||||||||||||| |||||||||| | Sbjct: 382 aacctcctaccgagcgcctcttccttgacaaatacgggaggatctgcttgtgccttgatg 441 Query: 448 agatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctgatca 507 |||| |||||| |||||||||| || ||||||||||| ||||| || ||||| |||| | Sbjct: 442 agattgtttggaaggggttgcttgaaaacacggagaaagacagagtgaggaggttgatta 501 Query: 508 ggctcaagcccccagtggagccatgattt 536 | || |||||||| |||||||||| |||| Sbjct: 502 gactaaagccccctgtggagccataattt 530
>gb|AY105605.1| Zea mays PCO095958 mRNA sequence Length = 744 Score = 327 bits (165), Expect = 3e-86 Identities = 336/393 (85%) Strand = Plus / Plus Query: 144 ttccatggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggc 203 |||||||| || || ||||||||| |||| ||||||||||||||||| || |||||||| Sbjct: 129 ttccatggggttcccgcggaggagaggctccactggcgctccttcctggtgaagctcgga 188 Query: 204 gccgagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagtcggtc 263 ||||||||||||| ||| ||||| ||||||||||| ||| || ||||||||||| || Sbjct: 189 tccgagaacctcaaagggtccaagaacgaggagctccacgttgcctcccacaagtctgtg 248 Query: 264 tccattgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaatat 323 || ||||| ||||||| | ||||||| |||||||| |||||||||||||||||||||||| Sbjct: 249 tctattgtttataccacggtcggggatgtctgcctctacattgttggcaaggatgaatat 308 Query: 324 gatgagcttgctctgtcggaggtgatcttcgctgttacgtcggcggtgaaggatgtgtgt 383 |||||||||||| || | ||||||||||| || |||| || || || |||||||| ||| Sbjct: 309 gatgagcttgctttggctgaggtgatctttgcaattacatcagcagtcaaggatgtttgt 368 Query: 384 gcgaaaccacccaccgagcgcctcttcctcgacaagtacgggaggatctgtctgtgcctt 443 || ||||| || ||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 369 gcaaaacctcctaccgagcgcctcttccttgacaaatacgggaggatctgcttgtgcctt 428 Query: 444 gacgagatcgtttggcaggggttgctggagaacacggagaaggacagggtccggaggctg 503 || ||||| |||||| |||||||||| || ||||||||||| ||||| || ||||| || Sbjct: 429 gatgagattgtttggaaggggttgcttgaaaacacggagaaagacagagtgaggaggttg 488 Query: 504 atcaggctcaagcccccagtggagccatgattt 536 || || || |||||||| |||||||||| |||| Sbjct: 489 attagactaaagccccctgtggagccataattt 521
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0062G19, complete sequence Length = 92392 Score = 117 bits (59), Expect = 6e-23 Identities = 101/115 (87%) Strand = Plus / Plus Query: 144 ttccatggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggc 203 |||||||| || || |||||||| ||||||||||||| || |||||||||||||| ||| Sbjct: 60511 ttccatggtgttcccgcggaggaaaggctgcactggcgttctttcctcgtcaagcttggc 60570 Query: 204 gccgagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagt 258 ||||| |||||||||||||||||| ||||||||||||||| || || ||||||| Sbjct: 60571 gccgacaacctcaagggggccaagaacgaggagctcctcgttgcctctcacaagt 60625 Score = 111 bits (56), Expect = 3e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 261 gtctccattgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaa 320 ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 61383 gtctctattgtttatacaatgattggggatgtctgcctgtacattgttggcaaggatgaa 61442 Query: 321 tatgatgagcttgctc 336 |||||||||||||||| Sbjct: 61443 tatgatgagcttgctc 61458 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 466 tgctggagaacacggagaaggacagggtccggaggctgatcaggctcaagcccccagtgg 525 ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || | Sbjct: 61821 tgctggagaacacggagaaggacagagtccggaggttgatcaggctaaagccgcccgttg 61880 Query: 526 agccatgatttttt 539 |||||||||||||| Sbjct: 61881 agccatgatttttt 61894 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 363 tcggcggtgaaggatgtgtgtgcgaaaccacccaccgagcgcctcttcctcgacaagtac 422 ||||| ||||||||||| |||| |||||| || || ||| | |||||||| ||||| ||| Sbjct: 61607 tcggcagtgaaggatgtatgtgggaaaccgcctacggagaggctcttccttgacaaatac 61666 Query: 423 gggaggatctgtctgtgccttgacgagatcgtttgg 458 ||||||||||| |||||||||| ||||| |||||| Sbjct: 61667 gggaggatctgcttgtgccttgatgagattgtttgg 61702 Score = 67.9 bits (34), Expect = 5e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 87 aagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgag 140 |||||||| || || ||||||||| |||||||||| |||||||||||||||||| Sbjct: 60228 aagatgatactagcggtgctcttctccaactccgacggcaacatcctcatcgag 60281
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 117 bits (59), Expect = 6e-23 Identities = 101/115 (87%) Strand = Plus / Plus Query: 144 ttccatggcgtcccggcggaggagcggctgcactggcgctccttcctcgtcaagctcggc 203 |||||||| || || |||||||| ||||||||||||| || |||||||||||||| ||| Sbjct: 35896702 ttccatggtgttcccgcggaggaaaggctgcactggcgttctttcctcgtcaagcttggc 35896761 Query: 204 gccgagaacctcaagggggccaagtccgaggagctcctcgtcgcttcccacaagt 258 ||||| |||||||||||||||||| ||||||||||||||| || || ||||||| Sbjct: 35896762 gccgacaacctcaagggggccaagaacgaggagctcctcgttgcctctcacaagt 35896816 Score = 111 bits (56), Expect = 3e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 261 gtctccattgtgtataccatgatcggggacgtctgcctgtacattgttggcaaggatgaa 320 ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 35897574 gtctctattgtttatacaatgattggggatgtctgcctgtacattgttggcaaggatgaa 35897633 Query: 321 tatgatgagcttgctc 336 |||||||||||||||| Sbjct: 35897634 tatgatgagcttgctc 35897649 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 466 tgctggagaacacggagaaggacagggtccggaggctgatcaggctcaagcccccagtgg 525 ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || | Sbjct: 35898012 tgctggagaacacggagaaggacagagtccggaggttgatcaggctaaagccgcccgttg 35898071 Query: 526 agccatgatttttt 539 |||||||||||||| Sbjct: 35898072 agccatgatttttt 35898085 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 363 tcggcggtgaaggatgtgtgtgcgaaaccacccaccgagcgcctcttcctcgacaagtac 422 ||||| ||||||||||| |||| |||||| || || ||| | |||||||| ||||| ||| Sbjct: 35897798 tcggcagtgaaggatgtatgtgggaaaccgcctacggagaggctcttccttgacaaatac 35897857 Query: 423 gggaggatctgtctgtgccttgacgagatcgtttgg 458 ||||||||||| |||||||||| ||||| |||||| Sbjct: 35897858 gggaggatctgcttgtgccttgatgagattgtttgg 35897893 Score = 67.9 bits (34), Expect = 5e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 87 aagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcgag 140 |||||||| || || ||||||||| |||||||||| |||||||||||||||||| Sbjct: 35896419 aagatgatactagcggtgctcttctccaactccgacggcaacatcctcatcgag 35896472
>gb|DQ244696.1| Zea mays clone 10128 mRNA sequence Length = 706 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 230 cgaggagctcctcgtcgcttcccacaagtcggtctccattgtgtataccatg 281 |||||||||||||||||||| |||||||||||| | || |||||||||||| Sbjct: 193 cgaggagctcctcgtcgcttgccacaagtcggtttatatcgtgtataccatg 244 Score = 52.0 bits (26), Expect = 0.003 Identities = 65/78 (83%) Strand = Plus / Plus Query: 414 gacaagtacgggaggatctgtctgtgccttgacgagatcgtttggcaggggttgctggag 473 ||||| ||||| ||||| ||| |||| ||||| |||||||||||| | || | |||||| Sbjct: 377 gacaaatacggaaggatttgtttgtgtcttgatgagatcgtttggaacggactcctggag 436 Query: 474 aacacggagaaggacagg 491 ||||| || ||||||||| Sbjct: 437 aacaccgacaaggacagg 454
>gb|BT012772.1| Lycopersicon esculentum clone 113750F, mRNA sequence Length = 872 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 102 gtgctcttcgccaactccgagggcaacatcctcatcga 139 ||||| ||||||||||||||||||||||||||| |||| Sbjct: 96 gtgctattcgccaactccgagggcaacatcctcgtcga 133
>gb|AC114536.18| Mus musculus chromosome 1, clone RP23-42M9, complete sequence Length = 193978 Score = 48.1 bits (24), Expect = 0.043 Identities = 30/32 (93%) Strand = Plus / Plus Query: 545 tgatggatcctgtgtatgtatccctttgttag 576 ||||||||||||| ||||||||| |||||||| Sbjct: 34891 tgatggatcctgtttatgtatccatttgttag 34922
>gb|AC110252.25| Mus musculus chromosome 6, clone RP23-267G12, complete sequence Length = 172806 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 603 cttgacacttgtgtggttcttct 625 ||||||||||||||||||||||| Sbjct: 29830 cttgacacttgtgtggttcttct 29808
>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence Length = 204528 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 603 cttgacacttgtgtggttcttct 625 ||||||||||||||||||||||| Sbjct: 29856 cttgacacttgtgtggttcttct 29878
>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete sequence Length = 113539 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Minus Query: 85 ggaagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcga 139 |||| ||||| || || ||||| || || ||| |||||||||||||||||||||| Sbjct: 78364 ggaatatgatccttgcggtgctttttgcgaacgccgagggcaacatcctcatcga 78310
>gb|AC122167.8| Medicago truncatula clone mth1-10d10, complete sequence Length = 93126 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Minus Query: 85 ggaagatgattctcgccgtgctcttcgccaactccgagggcaacatcctcatcga 139 |||| ||||| || || ||||| || || ||| |||||||||||||||||||||| Sbjct: 45077 ggaatatgatccttgcggtgctttttgcgaacgccgagggcaacatcctcatcga 45023
>ref|XM_960424.1| Neurospora crassa OR74A hypothetical protein (NCU01886.1) partial mRNA Length = 2424 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 ggccaagtccgaggagctcctcgtcg 246 ||||||| |||||||||||||||||| Sbjct: 1198 ggccaaggccgaggagctcctcgtcg 1173
>gb|AC188632.4| Canis Familiaris chromosome 6, clone XX-258K15, complete sequence Length = 188594 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||||||||| |||||||| Sbjct: 150247 gttgatgggaatgtaaattggtata 150271
>dbj|AK231373.1| Sus scrofa mRNA, clone:ITT010050C06, expressed in intestine Length = 1174 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||||||||| |||||||| Sbjct: 618 gttgatgggaatgtaaattggtata 594
>gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosome 17, complete sequence Length = 203927 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||||||||| |||||||| Sbjct: 170262 gttgatgggaatgtaaattggtata 170286
>gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC class II antigen (HLA-DRB1) gene, complete cds Length = 54488 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||||||||| |||||||| Sbjct: 28065 gttgatgggaatgtaaattggtata 28041
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence Length = 184366 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cattgttggcaaggatgaata 322 ||||||||||||||||||||| Sbjct: 44870 cattgttggcaaggatgaata 44850
>gb|AC024158.5| Homo sapiens chromosome 3 clone RP11-245A6 map 3p, complete sequence Length = 162042 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||||||||| |||||||| Sbjct: 104002 gttgatgggaatgtaagttggtata 104026
>gb|AC159028.3| Pan troglodytes BAC clone CH251-413M12 from chromosome unknown, complete sequence Length = 172935 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||| |||||||||||||| Sbjct: 29823 gttgatgggagtgtaatttggtata 29847
>gb|AC096749.2| Homo sapiens BAC clone RP11-415L23 from 4, complete sequence Length = 112187 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||| |||||||||||||| Sbjct: 107200 gttgatgggagtgtaatttggtata 107224
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 cggaggagcggctgcactggc 180 ||||||||||||||||||||| Sbjct: 1776211 cggaggagcggctgcactggc 1776191
>gb|AF269669.1|AF269669 Staphylococcus epidermidis strain SR1 clone step.1016d06 genomic sequence Length = 4331 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 464 gttgctggagaacacggagaa 484 ||||||||||||||||||||| Sbjct: 2725 gttgctggagaacacggagaa 2705
>emb|AJ630660.1| Cicer arietinum partial mRNA for hypothetical protein (ORF 316) Length = 691 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 312 aaggatgaatatgatgagcttgctctgtcggaggtgatctt 352 |||||||| || || || |||||| |||||||||||||||| Sbjct: 201 aaggatgagtacgacgaacttgctttgtcggaggtgatctt 241
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 gttgctggagaacacggagaa 484 ||||||||||||||||||||| Sbjct: 276413 gttgctggagaacacggagaa 276433
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 gttgctggagaacacggagaa 484 ||||||||||||||||||||| Sbjct: 383296 gttgctggagaacacggagaa 383316
>gb|U34374.1|HSTECTXT08 Human tyrosine kinase TXK (txk) gene, exons 9 and 10 Length = 6316 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||| |||||||||||||| Sbjct: 2875 gttgatgggagtgtaatttggtata 2851
>gb|U07794.1|HSTXK Human tyrosine kinase (TXK) gene, exon 12 and 13, partial cds Length = 5189 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 652 gttgatgggaatgtaatttggtata 676 |||||||||| |||||||||||||| Sbjct: 1748 gttgatgggagtgtaatttggtata 1724 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 110,625,719 Number of extensions: 5633429 Number of successful extensions: 109216 Number of sequences better than 10.0: 31 Number of HSP's gapped: 109215 Number of HSP's successfully gapped: 40 Length of query: 704 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 682 Effective length of database: 18,508,616,841 Effective search space: 12622876685562 Effective search space used: 12622876685562 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)