>P04052:RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 - Drosophila melanogaster|
            (Fruit fly)
          Length = 1887
 Score = 40.8 bits (94), Expect = 0.008
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = -2

Query: 429  SVSTNSSPAFPPSHTSFSEWASRSWNLSSSGWEPSTPGPASASVYTAEWSLREGLEWRLG 250
            S  T   P+F PS  S +   S SW+ +  G  PS+PGP+ +  + A  S+         
Sbjct: 1525 SAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSV--------- 1575

Query: 249  AAPS*YPRTSSTLTASSTG 193
             +PS Y  TS   TASS G
Sbjct: 1576 -SPS-YSPTSPNYTASSPG 1592

>P28668:SYEP_DROME Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA|
            synthetase - Drosophila melanogaster (Fruit fly)
          Length = 1714

 Score = 36.2 bits (82), Expect = 0.19
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +2

Query: 224  VRGYYDGAAPKRHSKPSRSDHSAVYTDALAGPGVDGSHPELDKF-QDLEAHSEKL-VCEG 397
            ++G Y   + K  +  ++S+ + V  +A     V  + P  D+  Q++ A  EK+   +G
Sbjct: 1082 LKGEYKTLSGKDWTPDAKSEPAVVKKEASP---VSMASPAKDELTQEINAQGEKVRAAKG 1138

Query: 398  GKAGEEFVETEYYKDLGCVGKQHHTTGTGFIKVDRPAGG 514
             KA +E ++ E  K L    K    TGT F    R  GG
Sbjct: 1139 NKAAKEVIDAEVAKLLALKAKYKEVTGTDFPVAGRGGGG 1177

>Q8FQB2:METE_COREF 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase - Corynebacterium efficiens
          Length = 754

 Score = 34.3 bits (77), Expect = 0.72
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +2

Query: 68  INATANNERGCGPAIPTHTTGSIPVDRLDMSSRPSRSDAHLSP--VDEAVRVD---EVRG 232
           + A A +E    P +PT T GS P  R   S+R      HL+P   ++A+R +    +R 
Sbjct: 404 VRAAAQDEALDLPPLPTTTIGSFPQTREIRSARARYRAGHLTPEQYEDAMRAEIAQVIRA 463

Query: 233 YYD-GAAPKRHSKPSRSDHSAVYTDALAG 316
             D G     H +P R+D    + + L G
Sbjct: 464 QEDLGLDVLVHGEPERNDMVQYFAELLDG 492

>Q62504:MINT_MOUSE Msx2-interacting protein - Mus musculus (Mouse)|
          Length = 3644

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 507  PAARSSSLKTRVRRSAMLPPRGTPPQTTGSXXXXXXXXXXXXSPTEATAEPGDDLQP 677
            P A S SL +R + SA +PP G P Q+T S             P     +P    QP
Sbjct: 3300 PVASSISLASRTKTSAQVPPEGEPLQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQP 3356

>Q9R172:NOTC3_RAT Neurogenic locus notch homolog protein 3 precursor - Rattus|
            norvegicus (Rat)
          Length = 2319

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -2

Query: 408  PAFPPSHTSFSEWASRSWNLSSSGWEPSTPGPASASVYTAEWSL 277
            P   PS  S   WAS S   S S W  STP PA+A+  TA  +L
Sbjct: 2244 PYLTPSPESPEHWASPS-PPSLSDWSDSTPSPATATSATAAGAL 2286

>Q61982:NOTC3_MOUSE Neurogenic locus notch homolog protein 3 precursor - Mus musculus|
            (Mouse)
          Length = 2318

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = -2

Query: 408  PAFPPSHTSFSEWASRSWNLSSSGWEPSTPGPASASVYTAEWSL 277
            P   PS  S   WAS S   S S W  STP PA+A+  TA  +L
Sbjct: 2243 PYLTPSPESPEHWASPS-PPSLSDWSDSTPSPATATNATASGAL 2285

>Q96D31:CRCM1_HUMAN Calcium release-activated calcium channel protein 1 - Homo sapiens|
           (Human)
          Length = 301

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 420 TNSSPAFPPSHTSFSEWASRSWNLSSSGWEPSTPGPASASVYTAEW 283
           + SSP  PPS  S +  + RS   S  G  P  P P  ++V   +W
Sbjct: 10  SRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDW 55

>P34161:YOX1_YEAST Homeobox protein YOX1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 385

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 865 PALHSVPHPQHRFPKRPTSLRV*QVL*IEPHKNPNNKWLTYTNTRPLFFNSRFNRKSYAS 686
           P  ++ P P H   +R ++  + +   +  H NP  K LT   T P   NSR N+   + 
Sbjct: 285 PLENTPPRPHHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSP---NSRVNKLINSI 341

Query: 685 DH 680
           DH
Sbjct: 342 DH 343

>P08286:H110_CHICK Histone H1.10 - Gallus gallus (Chicken)|
          Length = 220

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 437 KDLGCVGKQHHTTGTGFIKVDRPAGGSFELSEDPGATERHASSKGNPATNDWIPSADTVY 616
           K L   G    T GTG       A GSF LS+ PG  +  A  K  PA     P+A    
Sbjct: 86  KSLVSKGTLVQTKGTG-------ASGSFRLSKKPGEVKEKAPRKRTPAAKPKKPAAKKP- 137

Query: 617 QEASDKPNRS 646
             A+ KP ++
Sbjct: 138 ASAAKKPKKA 147

>Q8ZKV9:RBSA_SALTY Ribose import ATP-binding protein rbsA - Salmonella typhimurium|
          Length = 501

 Score = 30.8 bits (68), Expect = 7.9
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 654 EPGDDLQPT*SDAYDFRLNRLLKNKGRVFVYVSH 755
           EP D L  T +D+  FR+ R LK++GR  VY+SH
Sbjct: 167 EPTDALTDTETDSL-FRVIRELKSQGRGIVYISH 199

>Q8Z2R4:RBSA_SALTI Ribose import ATP-binding protein rbsA - Salmonella typhi|
          Length = 501

 Score = 30.8 bits (68), Expect = 7.9
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 654 EPGDDLQPT*SDAYDFRLNRLLKNKGRVFVYVSH 755
           EP D L  T +D+  FR+ R LK++GR  VY+SH
Sbjct: 167 EPTDALTDTETDSL-FRVIRELKSQGRGIVYISH 199

>Q57HW1:RBSA_SALCH Ribose import ATP-binding protein rbsA - Salmonella choleraesuis|
          Length = 501

 Score = 30.8 bits (68), Expect = 7.9
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 654 EPGDDLQPT*SDAYDFRLNRLLKNKGRVFVYVSH 755
           EP D L  T +D+  FR+ R LK++GR  VY+SH
Sbjct: 167 EPTDALTDTETDSL-FRVIRELKSQGRGIVYISH 199

>Q07230:ZSCA2_MOUSE Zinc finger and SCAN domain-containing protein 2 - Mus musculus|
           (Mouse)
          Length = 614

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 DGSHPELDKFQDLEAHSEKLVCEGGKAGEEF-VETEYYKDLGCVGKQHHTTG 478
           +G +   D F+ +E+H   L   GG+ G++   ++++ +D G  G Q H  G
Sbjct: 142 NGENSNEDMFEGVESHGMFLNISGGEGGQQSDGDSDFERDCGSGGAQGHAPG 193

>P24423:YVNF_AZOCH Hypothetical protein in vnfD 5'region - Azotobacter chroococcum mcd|
           1
          Length = 516

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = -2

Query: 804 EFDKYCR*NLTRIPITNG*HTRIRALYFLIADLTGSHTHLIMLAVDHRPAQLSLLLGLSD 625
           E+DK    NLTR  I       +R LY +I D + +H    ML+   + +++SL  GL++
Sbjct: 151 EYDKPILDNLTRPEIAREIRDGLRNLYSVIKD-SDAHVRFAMLSGVSKFSKVSLFSGLNN 209

Query: 624 ASWYTVSADGIQSFVAGF 571
                +S D   S + G+
Sbjct: 210 LD--DISVDSRYSALCGY 225

>P06921:VE2_HPV05 Regulatory protein E2 - Human papillomavirus type 5|
          Length = 514

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
 Frame = -2

Query: 453 TQPRSL*YSVSTNSSPAFPPSHTSFSEWASRSWNLSSSGWEPSTPG------PASASVYT 292
           T P S      TN++PA P + T+  +  SR    S    +  T G      P+S S  +
Sbjct: 202 TPPGSPGGQADTNTTPATPTTSTTAVDSTSRQLTTSKQPQQTETRGRRYGRRPSSKSRRS 261

Query: 291 AEWSLREGLEWRLGAAPS*YPRTSSTLTASSTGDRCASLLLGLDDMS-SRSTGMLPVVCV 115
                R     R  +      ++ +  T S+T  R  SL       S SRS G  P  C 
Sbjct: 262 QTQQRRSRSRHRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSRSRGRSPTTCR 321

Query: 114 GIAGPQPR 91
              G  PR
Sbjct: 322 RGGGRSPR 329

>Q12218:TIR4_YEAST Cell wall protein TIR4 precursor - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 487

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 3/177 (1%)
 Frame = -2

Query: 606 SADGIQSFVAGFPLEEAWRSVAPGSSESSNEPPAGLSTLMKPVPVV*CCLPTQPRSL*YS 427
           S++ + S VA    E A  SVAP SSE  +   A  S+ +    V        P S   S
Sbjct: 168 SSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASSSSEVASSSVA-------PSS---S 217

Query: 426 VSTNSSPAFPPSHTSFSEWASRSWNLSSSGWEPSTPGPASASVYTAEWSLREGLEWRLGA 247
              +SS A   S    S  AS S  ++SS   PS+    S+SV ++              
Sbjct: 218 EVVSSSVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASS-----------TSE 266

Query: 246 APS*YPRTSSTLTASSTGDRCASLLLGLDDMSSR---STGMLPVVCVGIAGPQPRSL 85
           A S    TSS+  +SST    +S +     +SS    S+  +  V    AGP   S+
Sbjct: 267 ATSSSAVTSSSAVSSSTESVSSSSVSSSSAVSSSEAVSSSPVSSVVSSSAGPASSSV 323

>Q13023:AKAP6_HUMAN A-kinase anchor protein 6 - Homo sapiens (Human)|
          Length = 2319

 Score = 30.8 bits (68), Expect = 8.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 524 LSEDPGATERHASSKGNPATNDWIPSADTVYQEAS 628
           + E PG T   +SS G   TN   PS++TV QE+S
Sbjct: 315 VEEQPGLTLGVSSSSGEALTNAAQPSSETVQQESS 349


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 138,780,455
Number of extensions: 3140016
Number of successful extensions: 10514
Number of sequences better than 10.0: 17
Number of HSP's gapped: 10495
Number of HSP's successfully gapped: 17
Length of query: 306
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 193
Effective length of database: 69,691,104
Effective search space: 13450383072
Effective search space used: 13450383072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)