Clone Information

BLAST Search Result

Clone Name	FLbaf76f21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001059846.1\| Oryza sativa (japonica cultivar-group) Os04g...	313	5e-82
2	emb\|CR855219.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	230	6e-57
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	230	6e-57
4	emb\|AL606659.3\|OSJN00108 Oryza sativa genomic DNA, chromosome 4,...	230	6e-57
5	emb\|AL731630.2\|OSJN00273 Oryza sativa genomic DNA, chromosome 4,...	230	6e-57
6	ref\|NM_001059048.1\| Oryza sativa (japonica cultivar-group) Os04g...	121	4e-24
7	dbj\|AK109486.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	121	4e-24
8	dbj\|AK101242.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	121	4e-24
9	emb\|CR855108.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	86	2e-13
10	emb\|AL662963.3\|OSJN00163 Oryza sativa genomic DNA, chromosome 4,...	86	2e-13
11	ref\|NM_001053383.1\| Oryza sativa (japonica cultivar-group) Os02g...	66	2e-07
12	dbj\|AB110198.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	66	2e-07
13	gb\|AY112189.1\| Zea mays CL46799_1 mRNA sequence	52	0.003
14	dbj\|AK241251.1\| Oryza sativa (japonica cultivar-group) cDNA, clo...	44	0.74
15	gb\|AC166989.4\| Mus musculus BAC clone RP24-345J5 from chromosome...	44	0.74
16	gb\|AY186579.1\| Didelphis virginiana sodium dicarboxylate co-tran...	44	0.74
17	gb\|AY596305.1\| Chlamydomonas reinhardtii cell wall protein GP2 (...	44	0.74
18	gb\|AF521878.1\| Streptomyces narbonensis desosamine biosynthetic ...	44	0.74
19	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.74
20	gb\|AC132145.3\| Mus musculus BAC clone RP23-44H21 from chromosome...	44	0.74
21	gb\|AC139666.11\| Homo sapiens 3 BAC RP11-185G19 (Roswell Park Can...	44	0.74
22	gb\|AC154775.2\| Mus musculus BAC clone RP23-100F7 from chromosome...	44	0.74
23	dbj\|AP005316.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.74
24	dbj\|AP004884.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.74
25	gb\|AC182458.2\| Mus musculus BAC clone RP23-14N12 from chromosome...	42	2.9
26	ref\|NM_001062943.1\| Oryza sativa (japonica cultivar-group) Os05g...	42	2.9
27	gb\|BT027774.1\| Gasterosteus aculeatus clone CNB16-A08 mRNA sequence	42	2.9
28	ref\|XM_001090215.1\| PREDICTED: Macaca mulatta similar to myeloid...	42	2.9
29	gb\|CP000113.1\| Myxococcus xanthus DK 1622, complete genome	42	2.9
30	gb\|AC098571.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.9
31	gb\|AC122816.4\| Mus musculus BAC clone RP23-235N10 from chromosom...	42	2.9
32	ref\|XM_546780.2\| PREDICTED: Canis familiaris similar to myeloid ...	42	2.9
33	dbj\|AP007175.1\| Aspergillus oryzae RIB40 genomic DNA, SC010	42	2.9
34	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.9
35	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.9
36	emb\|AL731534.7\| Human DNA sequence from clone RP11-550A9 on chro...	42	2.9
37	gb\|AE016816.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	42	2.9
38	gb\|AC154267.2\| Mus musculus BAC clone RP24-227G11 from chromosom...	42	2.9
39	gb\|AC155162.5\| Mus musculus BAC clone RP24-421I19 from chromosom...	42	2.9
40	gb\|AY224453.1\| Oryza sativa (japonica cultivar-group) isolate 23...	42	2.9
41	emb\|BX842620.1\| Neurospora crassa DNA linkage group V BAC contig...	42	2.9
42	gb\|AC155655.8\| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cance...	42	2.9
43	dbj\|AP005556.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.9
44	ref\|XM_951661.1\| Neurospora crassa OR74A hypothetical protein (N...	42	2.9
45	gb\|AF369906.1\| Sorghum bicolor clone BAC10J22 Sbb3766 sequence	42	2.9
46	dbj\|AK107217.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.9
47	gb\|AC122205.6\| Mus musculus BAC clone RP23-76C13 from chromosome...	42	2.9
48	gb\|AC153944.3\| Mus musculus 10 BAC RP24-292A13 (Roswell Park Can...	42	2.9
49	ref\|NM_208937.1\| Eremothecium gossypii ACR182Cp (ACR182C), mRNA	42	2.9
50	gb\|AC130926.4\| Rattus norvegicus BAC CH230-39O11 (Children's Ho...	42	2.9

>ref|NM_001059846.1| Oryza sativa (japonica cultivar-group) Os04g0515400 (Os04g0515400)
           mRNA, complete cds
          Length = 414
 Score =  313 bits (158), Expect = 5e-82
 Identities = 298/342 (87%), Gaps = 2/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 60  aggaggaggcggccgccgacgtgagcctgaaggatctgtccaggaggctcgacgacttcg 119
           |||||| ||||||  | ||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 68  aggaggcggcggcttctgacgtgagcctgaaggagctgtccaagaagctcgatgacttcg 127

                                                                       
Query: 120 ccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatggttg 179
           |||||||| |||||||||||| | ||||   ||| |||||||||||||| |||||| | |
Sbjct: 128 ccaaggagagggactgggagatgtaccatgccccgaggaaccttctgcttgccatgatcg 187

                                                                       
Query: 180 gcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt-tgt 238
             ||||| |||||||||||||||||||||||||||||||||||||||   |||||  || 
Sbjct: 188 ctgaggtcggggagctgtcggagctgttcatgtggaaaggggaggtggccaagggcctgc 247

                                                                       
Query: 239 ccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctc 298
           ||||| ||| |||||  |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 ccggg-tggaaggagtcggagaaggagcacctcggcgaggagctctccgacgtgctgctc 306

                                                                       
Query: 299 tacctgatccggctctctgacatgtgtggcgtcgacctcggcgacgcggccctgaagaag 358
           ||||||||||||||||| |||||||| |||||||||||||||||||| |||   | ||||
Sbjct: 307 tacctgatccggctctccgacatgtgcggcgtcgacctcggcgacgccgccaccaggaag 366

                                                     
Query: 359 attgtgaagaacgccgtcaagtacccggcaccgtcaaagagc 400
           || || |||||||||||||||||||| || ||||| ||||||
Sbjct: 367 atcgtcaagaacgccgtcaagtacccagcgccgtcgaagagc 408

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>emb|CR855219.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140J09,
             complete sequence
          Length = 81683

 Score =  230 bits (116), Expect = 6e-57
 Identities = 196/220 (89%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                         
Query: 182   gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt-tgtcc 240
             ||||| |||||||||||||||||||||||||||||||||||||||   |||||  || ||
Sbjct: 76169 gaggtcggggagctgtcggagctgttcatgtggaaaggggaggtggccaagggcctgccc 76228

                                                                         
Query: 241   gggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctcta 300
             ||| ||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 76229 ggg-tggaaggagtcggagaaggagcacctcggcgaggagctctccgacgtgctgctcta 76287

                                                                         
Query: 301   cctgatccggctctctgacatgtgtggcgtcgacctcggcgacgcggccctgaagaagat 360
             ||||||||||||||| |||||||| |||||||||||||||||||| |||   | ||||||
Sbjct: 76288 cctgatccggctctccgacatgtgcggcgtcgacctcggcgacgccgccaccaggaagat 76347

                                                     
Query: 361   tgtgaagaacgccgtcaagtacccggcaccgtcaaagagc 400
              || |||||||||||||||||||| || ||||| ||||||
Sbjct: 76348 cgtcaagaacgccgtcaagtacccagcgccgtcgaagagc 76387



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                         
Query: 60    aggaggaggcggccgccgacgtgagcctgaaggatctgtccaggaggctcgacgacttcg 119
             |||||| ||||||  | ||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 74359 aggaggcggcggcttctgacgtgagcctgaaggagctgtccaagaagctcgatgacttcg 74418

                                                                        
Query: 120   ccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatggtt 178
             |||||||| |||||||||||| | ||||   ||| |||||||||||||| |||||||||
Sbjct: 74419 ccaaggagagggactgggagatgtaccatgccccgaggaaccttctgcttgccatggtt 74477

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score =  230 bits (116), Expect = 6e-57
 Identities = 196/220 (89%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                            
Query: 182      gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt-tgtcc 240
                ||||| |||||||||||||||||||||||||||||||||||||||   |||||  || ||
Sbjct: 25729476 gaggtcggggagctgtcggagctgttcatgtggaaaggggaggtggccaagggcctgccc 25729535

                                                                            
Query: 241      gggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctcta 300
                ||| ||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 25729536 ggg-tggaaggagtcggagaaggagcacctcggcgaggagctctccgacgtgctgctcta 25729594

                                                                            
Query: 301      cctgatccggctctctgacatgtgtggcgtcgacctcggcgacgcggccctgaagaagat 360
                ||||||||||||||| |||||||| |||||||||||||||||||| |||   | ||||||
Sbjct: 25729595 cctgatccggctctccgacatgtgcggcgtcgacctcggcgacgccgccaccaggaagat 25729654

                                                        
Query: 361      tgtgaagaacgccgtcaagtacccggcaccgtcaaagagc 400
                 || |||||||||||||||||||| || ||||| ||||||
Sbjct: 25729655 cgtcaagaacgccgtcaagtacccagcgccgtcgaagagc 25729694



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                            
Query: 60       aggaggaggcggccgccgacgtgagcctgaaggatctgtccaggaggctcgacgacttcg 119
                |||||| ||||||  | ||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 25727661 aggaggcggcggcttctgacgtgagcctgaaggagctgtccaagaagctcgatgacttcg 25727720

                                                                           
Query: 120      ccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatggtt 178
                |||||||| |||||||||||| | ||||   ||| |||||||||||||| |||||||||
Sbjct: 25727721 ccaaggagagggactgggagatgtaccatgccccgaggaaccttctgcttgccatggtt 25727779



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                            
Query: 182      gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggttgtccg 241
                ||||| |||||||| |||||| | |||  |||||| ||||||||||  |||||    || 
Sbjct: 16510662 gaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaaggggctccct 16510721

                                                                            
Query: 242      ggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctctac 301
                || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| ||||||
Sbjct: 16510722 gggtggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctcctctac 16510781

                                       
Query: 302      ctgatccggctctctgacatgtg 324
                || ||||| ||||||||||||||
Sbjct: 16510782 ctcatccgcctctctgacatgtg 16510804



 Score = 48.1 bits (24), Expect = 0.047
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 116      ttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgc 171
                ||||||| |||| |||| |||||| ||  ||||||||| ||||||||||| |||||
Sbjct: 16508819 ttcgccagggagagggattgggagcagttccacagccccaggaaccttctcctcgc 16508874

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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
              complete sequence
          Length = 130718

 Score =  230 bits (116), Expect = 6e-57
 Identities = 196/220 (89%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                          
Query: 182    gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt-tgtcc 240
              ||||| |||||||||||||||||||||||||||||||||||||||   |||||  || ||
Sbjct: 109203 gaggtcggggagctgtcggagctgttcatgtggaaaggggaggtggccaagggcctgccc 109262

                                                                          
Query: 241    gggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctcta 300
              ||| ||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 109263 ggg-tggaaggagtcggagaaggagcacctcggcgaggagctctccgacgtgctgctcta 109321

                                                                          
Query: 301    cctgatccggctctctgacatgtgtggcgtcgacctcggcgacgcggccctgaagaagat 360
              ||||||||||||||| |||||||| |||||||||||||||||||| |||   | ||||||
Sbjct: 109322 cctgatccggctctccgacatgtgcggcgtcgacctcggcgacgccgccaccaggaagat 109381

                                                      
Query: 361    tgtgaagaacgccgtcaagtacccggcaccgtcaaagagc 400
               || |||||||||||||||||||| || ||||| ||||||
Sbjct: 109382 cgtcaagaacgccgtcaagtacccagcgccgtcgaagagc 109421



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                          
Query: 60     aggaggaggcggccgccgacgtgagcctgaaggatctgtccaggaggctcgacgacttcg 119
              |||||| ||||||  | ||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 107388 aggaggcggcggcttctgacgtgagcctgaaggagctgtccaagaagctcgatgacttcg 107447

                                                                         
Query: 120    ccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatggtt 178
              |||||||| |||||||||||| | ||||   ||| |||||||||||||| |||||||||
Sbjct: 107448 ccaaggagagggactgggagatgtaccatgccccgaggaaccttctgcttgccatggtt 107506

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>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
             complete sequence
          Length = 127712

 Score =  230 bits (116), Expect = 6e-57
 Identities = 196/220 (89%), Gaps = 2/220 (0%)
 Strand = Plus / Plus

                                                                         
Query: 182   gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt-tgtcc 240
             ||||| |||||||||||||||||||||||||||||||||||||||   |||||  || ||
Sbjct: 52403 gaggtcggggagctgtcggagctgttcatgtggaaaggggaggtggccaagggcctgccc 52462

                                                                         
Query: 241   gggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctcta 300
             ||| ||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 52463 ggg-tggaaggagtcggagaaggagcacctcggcgaggagctctccgacgtgctgctcta 52521

                                                                         
Query: 301   cctgatccggctctctgacatgtgtggcgtcgacctcggcgacgcggccctgaagaagat 360
             ||||||||||||||| |||||||| |||||||||||||||||||| |||   | ||||||
Sbjct: 52522 cctgatccggctctccgacatgtgcggcgtcgacctcggcgacgccgccaccaggaagat 52581

                                                     
Query: 361   tgtgaagaacgccgtcaagtacccggcaccgtcaaagagc 400
              || |||||||||||||||||||| || ||||| ||||||
Sbjct: 52582 cgtcaagaacgccgtcaagtacccagcgccgtcgaagagc 52621



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                         
Query: 60    aggaggaggcggccgccgacgtgagcctgaaggatctgtccaggaggctcgacgacttcg 119
             |||||| ||||||  | ||||||||||||||||| ||||||| || |||||| |||||||
Sbjct: 50588 aggaggcggcggcttctgacgtgagcctgaaggagctgtccaagaagctcgatgacttcg 50647

                                                                        
Query: 120   ccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatggtt 178
             |||||||| |||||||||||| | ||||   ||| |||||||||||||| |||||||||
Sbjct: 50648 ccaaggagagggactgggagatgtaccatgccccgaggaaccttctgcttgccatggtt 50706

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>ref|NM_001059048.1| Oryza sativa (japonica cultivar-group) Os04g0346800 (Os04g0346800)
           mRNA, complete cds
          Length = 912

 Score =  121 bits (61), Expect = 4e-24
 Identities = 172/209 (82%)
 Strand = Plus / Plus

                                                                       
Query: 116 ttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatg 175
           ||||||| |||| |||| |||||| ||  ||||||||| ||||||||||| |||||  ||
Sbjct: 282 ttcgccagggagagggattgggagcagttccacagccccaggaaccttctcctcgctctg 341

                                                                       
Query: 176 gttggcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt 235
           || || ||||| |||||||| |||||| | |||  |||||| ||||||||||  ||||| 
Sbjct: 342 gtgggtgaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaagggg 401

                                                                       
Query: 236 tgtccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctg 295
              || || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| 
Sbjct: 402 ctccctgggtggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctc 461

                                        
Query: 296 ctctacctgatccggctctctgacatgtg 324
           |||||||| ||||| ||||||||||||||
Sbjct: 462 ctctacctcatccgcctctctgacatgtg 490

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>dbj|AK109486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H07, full
           insert sequence
          Length = 912

 Score =  121 bits (61), Expect = 4e-24
 Identities = 172/209 (82%)
 Strand = Plus / Plus

                                                                       
Query: 116 ttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatg 175
           ||||||| |||| |||| |||||| ||  ||||||||| ||||||||||| |||||  ||
Sbjct: 282 ttcgccagggagagggattgggagcagttccacagccccaggaaccttctcctcgctctg 341

                                                                       
Query: 176 gttggcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt 235
           || || ||||| |||||||| |||||| | |||  |||||| ||||||||||  ||||| 
Sbjct: 342 gtgggtgaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaagggg 401

                                                                       
Query: 236 tgtccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctg 295
              || || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| 
Sbjct: 402 ctccctgggtggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctc 461

                                        
Query: 296 ctctacctgatccggctctctgacatgtg 324
           |||||||| ||||| ||||||||||||||
Sbjct: 462 ctctacctcatccgcctctctgacatgtg 490

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>dbj|AK101242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031P14, full
           insert sequence
          Length = 830

 Score =  121 bits (61), Expect = 4e-24
 Identities = 172/209 (82%)
 Strand = Plus / Plus

                                                                       
Query: 116 ttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgccatg 175
           ||||||| |||| |||| |||||| ||  ||||||||| ||||||||||| |||||  ||
Sbjct: 196 ttcgccagggagagggattgggagcagttccacagccccaggaaccttctcctcgctctg 255

                                                                       
Query: 176 gttggcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggt 235
           || || ||||| |||||||| |||||| | |||  |||||| ||||||||||  ||||| 
Sbjct: 256 gtgggtgaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaagggg 315

                                                                       
Query: 236 tgtccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctg 295
              || || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| 
Sbjct: 316 ctccctgggtggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctc 375

                                        
Query: 296 ctctacctgatccggctctctgacatgtg 324
           |||||||| ||||| ||||||||||||||
Sbjct: 376 ctctacctcatccgcctctctgacatgtg 404

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>emb|CR855108.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14,
             complete sequence
          Length = 82987

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                         
Query: 182   gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggttgtccg 241
             ||||| |||||||| |||||| | |||  |||||| ||||||||||  |||||    || 
Sbjct: 39329 gaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaaggggctccct 39388

                                                                         
Query: 242   ggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctctac 301
             || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| ||||||
Sbjct: 39389 gggtggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctcctctac 39448

                                    
Query: 302   ctgatccggctctctgacatgtg 324
             || ||||| ||||||||||||||
Sbjct: 39449 ctcatccgcctctctgacatgtg 39471

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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 119/143 (83%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                         
Query: 182   gaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaagggttgtccg 241
             ||||| |||||||| |||||| | |||  |||||| ||||||||||  ||||| |  | |
Sbjct: 39896 gaggtgggggagctctcggaggtcttccagtggaagggggaggtgcccaagggctccctg 39955

                                                                         
Query: 242   ggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtgctgctctac 301
             || |||| ||||||||||  ||||||||| |||||||||||| | || ||||| ||||||
Sbjct: 39956 gg-tggggggagagggaggtggagcacctaggcgaggagctcgccgatgtgctcctctac 40014

                                    
Query: 302   ctgatccggctctctgacatgtg 324
             || ||||| ||||||||||||||
Sbjct: 40015 ctcatccgcctctctgacatgtg 40037



 Score = 48.1 bits (24), Expect = 0.047
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 116   ttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgc 171
             ||||||| |||| |||| |||||| ||  ||||||||| ||||||||||| |||||
Sbjct: 38053 ttcgccagggagagggattgggagcagttccacagccccaggaaccttctcctcgc 38108

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>ref|NM_001053383.1| Oryza sativa (japonica cultivar-group) Os02g0479300 (Os02g0479300)
           mRNA, complete cds
          Length = 747

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                       
Query: 113 gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
           |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 105 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 164

                                                                       
Query: 173 atggttggcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaag 232
            |||| || ||||| || ||||| || ||| | |||  |||||||||||||||||  |||
Sbjct: 165 ctggtaggggaggtaggagagctctctgagatattccagtggaaaggggaggtgcccaag 224

                                                                       
Query: 233 ggttgtccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtg 292
           ||    || |||||||| |||  |||||||| |||| | || ||||||||  | || |||
Sbjct: 225 gggctccccggctgggacgaggcggagaaggtgcacttgggggaggagctggccgatgtg 284

                                                    
Query: 293 ctgctctacctgatccggctctctgacatgtgtggcgtcga 333
           || ||||||||  || |||| || |||||||| || |||||
Sbjct: 285 ctcctctacctcgtcaggctgtcggacatgtgcggagtcga 325

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>dbj|AB110198.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 23C4AR004
          Length = 747

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                       
Query: 113 gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
           |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 105 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 164

                                                                       
Query: 173 atggttggcgaggttggggagctgtcggagctgttcatgtggaaaggggaggtgcagaag 232
            |||| || ||||| || ||||| || ||| | |||  |||||||||||||||||  |||
Sbjct: 165 ctggtaggggaggtaggagagctctctgagatattccagtggaaaggggaggtgcccaag 224

                                                                       
Query: 233 ggttgtccgggctgggaggagagggagaaggagcacctcggcgaggagctctcggacgtg 292
           ||    || |||||||| |||  |||||||| |||| | || ||||||||  | || |||
Sbjct: 225 gggctccccggctgggacgaggcggagaaggtgcacttgggggaggagctggccgatgtg 284

                                                    
Query: 293 ctgctctacctgatccggctctctgacatgtgtggcgtcga 333
           || ||||||||  || |||| || |||||||| || |||||
Sbjct: 285 ctcctctacctcgtcaggctgtcggacatgtgcggagtcga 325

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>gb|AY112189.1| Zea mays CL46799_1 mRNA sequence
          Length = 651

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 275 gaggagctctcggacgtgctgctctacctgatccggctctctgacatgtgtggcgtcgac 334
           ||||||||| | |||||||| ||||| ||| | || || || |||||||| |||||||||
Sbjct: 643 gaggagctcgccgacgtgctcctctatctggtgcgcctgtcggacatgtgcggcgtcgac 584

                 
Query: 335 ctcggc 340
           ||||||
Sbjct: 583 ctcggc 578

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>dbj|AK241251.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065130B10,
           full insert sequence
          Length = 2512

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 113 gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
           |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 143 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 202

                 
Query: 173 atggtt 178
            |||||
Sbjct: 203 ctggtt 208

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>gb|AC166989.4| Mus musculus BAC clone RP24-345J5 from chromosome 16, complete sequence
          Length = 232228

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 196   gtcggagctgttcatgtggaaagggg 221
             ||||||||||||||| ||||||||||
Sbjct: 90534 gtcggagctgttcatttggaaagggg 90509

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>gb|AY186579.1| Didelphis virginiana sodium dicarboxylate co-transporter mRNA,
           complete cds
          Length = 2404

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 247 ggaggagagggagaaggagcac 268
           ||||||||||||||||||||||
Sbjct: 702 ggaggagagggagaaggagcac 723

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>gb|AY596305.1| Chlamydomonas reinhardtii cell wall protein GP2 (GP2) mRNA, partial
            cds
          Length = 4218

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 232  gggttgtccgggctgggaggagagggagaaggag 265
            |||||| | ||||||||||||||||||| |||||
Sbjct: 1604 gggttggcggggctgggaggagagggaggaggag 1571

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>gb|AF521878.1| Streptomyces narbonensis desosamine biosynthetic gene cluster, partial
             sequence
          Length = 17665

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 324   gtggcgtcgacctcggcgacgc 345
             ||||||||||||||||||||||
Sbjct: 10186 gtggcgtcgacctcggcgacgc 10207

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                            
Query: 113      gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
                |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 16568131 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 16568072

                      
Query: 173      atggtt 178
                 |||||
Sbjct: 16568071 ctggtt 16568066

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>gb|AC132145.3| Mus musculus BAC clone RP23-44H21 from chromosome 7, complete sequence
          Length = 162513

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 4     ggaggtggagggggagaagaaggtgg 29
             |||| |||||||||||||||||||||
Sbjct: 58038 ggagatggagggggagaagaaggtgg 58063

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>gb|AC139666.11| Homo sapiens 3 BAC RP11-185G19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92415

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 233   ggttgtccgggctgggaggagaggga 258
             ||||||| ||||||||||||||||||
Sbjct: 21598 ggttgtcagggctgggaggagaggga 21573

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>gb|AC154775.2| Mus musculus BAC clone RP23-100F7 from chromosome 16, complete sequence
          Length = 192492

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 196   gtcggagctgttcatgtggaaagggg 221
             ||||||||||||||| ||||||||||
Sbjct: 25013 gtcggagctgttcatttggaaagggg 25038

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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0527E02
          Length = 176826

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                          
Query: 113    gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
              |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 141546 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 141487

                    
Query: 173    atggtt 178
               |||||
Sbjct: 141486 ctggtt 141481

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>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519B12
          Length = 147542

 Score = 44.1 bits (22), Expect = 0.74
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                         
Query: 113   gacttcgccaaggagcgggactgggagaagcaccacagcccaaggaaccttctgctcgcc 172
             |||||||||| |||| |||| |||||| ||  ||||  |||||||||||| || ||||||
Sbjct: 10098 gacttcgccagggagagggattgggagcagttccactccccaaggaacctcctcctcgcc 10039

                   
Query: 173   atggtt 178
              |||||
Sbjct: 10038 ctggtt 10033

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>gb|AC182458.2| Mus musculus BAC clone RP23-14N12 from chromosome 8, complete sequence
          Length = 244509

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    ggaggagagggagaaggagca 267
              |||||||||||||||||||||
Sbjct: 133275 ggaggagagggagaaggagca 133295

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>ref|NM_001062943.1| Oryza sativa (japonica cultivar-group) Os05g0577700 (Os05g0577700)
           mRNA, complete cds
          Length = 1513

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 59  aaggaggaggcggccgccgac 79
           |||||||||||||||||||||
Sbjct: 282 aaggaggaggcggccgccgac 302

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>gb|BT027774.1| Gasterosteus aculeatus clone CNB16-A08 mRNA sequence
          Length = 3159

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 239 ccgggctgggaggagagggag 259
           |||||||||||||||||||||
Sbjct: 981 ccgggctgggaggagagggag 961

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>ref|XM_001090215.1| PREDICTED: Macaca mulatta similar to myeloid translocation
            gene-related protein 2 isoform MTG16a (LOC698233), mRNA
          Length = 4073

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 128  cgggactgggagaagcaccac 148
            |||||||||||||||||||||
Sbjct: 2137 cgggactgggagaagcaccac 2157

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>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
          Length = 9139763

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 73      cgccgacgtgagcctgaagga 93
               |||||||||||||||||||||
Sbjct: 6290680 cgccgacgtgagcctgaagga 6290700

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>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
             complete sequence
          Length = 127304

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    aaggaggaggcggccgccgac 79
             |||||||||||||||||||||
Sbjct: 70772 aaggaggaggcggccgccgac 70752

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>gb|AC122816.4| Mus musculus BAC clone RP23-235N10 from chromosome 6, complete sequence
          Length = 177967

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 484    tgtcgtcgttttcttcttttc 504
              |||||||||||||||||||||
Sbjct: 156823 tgtcgtcgttttcttcttttc 156803

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>ref|XM_546780.2| PREDICTED: Canis familiaris similar to myeloid translocation
            gene-related protein 2 isoform MTG16a (LOC489660), mRNA
          Length = 2001

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 128  cgggactgggagaagcaccac 148
            |||||||||||||||||||||
Sbjct: 1786 cgggactgggagaagcaccac 1806

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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 487    cgtcgttttcttcttttcaat 507
              |||||||||||||||||||||
Sbjct: 525969 cgtcgttttcttcttttcaat 525989

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        gatggaggtggagggggagaa 21
                |||||||||||||||||||||
Sbjct: 13003458 gatggaggtggagggggagaa 13003438

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 59       aaggaggaggcggccgccgac 79
                |||||||||||||||||||||
Sbjct: 28543079 aaggaggaggcggccgccgac 28543059

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>emb|AL731534.7| Human DNA sequence from clone RP11-550A9 on chromosome 10 Contains a
             pseudogene similar to part of tubulin beta 2 (TUBB2),
             complete sequence
          Length = 107373

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agggaaggagacgaaggagga 66
             |||||||||||||||||||||
Sbjct: 36232 agggaaggagacgaaggagga 36252

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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     agaaggtggccatggaggcgg 41
              |||||||||||||||||||||
Sbjct: 667461 agaaggtggccatggaggcgg 667481

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>gb|AC154267.2| Mus musculus BAC clone RP24-227G11 from chromosome 17, complete
             sequence
          Length = 181763

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   gggagaagcaccacagcccaa 155
             |||||||||||||||||||||
Sbjct: 70089 gggagaagcaccacagcccaa 70109

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>gb|AC155162.5| Mus musculus BAC clone RP24-421I19 from chromosome 16, complete sequence
          Length = 200912

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      aggtggagggggagaagaagg 26
              |||||||||||||||||||||
Sbjct: 109602 aggtggagggggagaagaagg 109582

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>gb|AY224453.1| Oryza sativa (japonica cultivar-group) isolate 23379 putative
           protein kinase mRNA, complete cds
          Length = 1149

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 59  aaggaggaggcggccgccgac 79
           |||||||||||||||||||||
Sbjct: 115 aaggaggaggcggccgccgac 135

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>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5
          Length = 191196

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 31    catggaggcggagctagggaaggagacgaaggaggaggcgg 71
             |||||||| ||||||  ||||||||  ||||||||||||||
Sbjct: 58647 catggaggaggagctctggaaggaggagaaggaggaggcgg 58687

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>gb|AC155655.8| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203618

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     gaggtggagggggagaagaag 25
             |||||||||||||||||||||
Sbjct: 79675 gaggtggagggggagaagaag 79655

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>dbj|AP005556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_F11
          Length = 113866

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     gatggaggtggagggggagaa 21
             |||||||||||||||||||||
Sbjct: 30336 gatggaggtggagggggagaa 30316

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>ref|XM_951661.1| Neurospora crassa OR74A hypothetical protein (NCU01477.1) partial
            mRNA
          Length = 1713

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 31   catggaggcggagctagggaaggagacgaaggaggaggcgg 71
            |||||||| ||||||  ||||||||  ||||||||||||||
Sbjct: 1063 catggaggaggagctctggaaggaggagaaggaggaggcgg 1103

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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 3     tggaggtggagggggagaagaaggtggccatggaggc 39
             |||||||||||| ||||| |||| ||| |||||||||
Sbjct: 85173 tggaggtggaggtggagatgaagatggacatggaggc 85137

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>dbj|AK107217.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C11, full
           insert sequence
          Length = 1513

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 59  aaggaggaggcggccgccgac 79
           |||||||||||||||||||||
Sbjct: 282 aaggaggaggcggccgccgac 302

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>gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome 8, complete sequence
          Length = 249808

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    ggaggagagggagaaggagca 267
              |||||||||||||||||||||
Sbjct: 234980 ggaggagagggagaaggagca 235000

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>gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 139203

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 4      ggaggtggagggggagaagaaggtg 28
              ||||| |||||||||||||||||||
Sbjct: 103981 ggaggaggagggggagaagaaggtg 104005

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>ref|NM_208937.1| Eremothecium gossypii ACR182Cp (ACR182C), mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 21  agaaggtggccatggaggcgg 41
           |||||||||||||||||||||
Sbjct: 913 agaaggtggccatggaggcgg 893

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>gb|AC130926.4| Rattus norvegicus  BAC CH230-39O11 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 217219

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 245   tgggaggagagggagaaggag 265
             |||||||||||||||||||||
Sbjct: 43890 tgggaggagagggagaaggag 43910


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 129,528,074
Number of extensions: 7631704
Number of successful extensions: 174749
Number of sequences better than 10.0: 50
Number of HSP's gapped: 174746
Number of HSP's successfully gapped: 62
Length of query: 777
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 755
Effective length of database: 18,508,616,841
Effective search space: 13974005714955
Effective search space used: 13974005714955
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result