>LOC_Os08g27140:12008.t02478:unspliced-genomic expressed protein|
Length = 1191
Score = 133 bits (285), Expect(2) = 9e-60
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +1 / +1
Query: 415 VKDVGLRGLTSKRQMKIMLRWMREKQKLRLICDHDGPHKQFLYTTWFTNPKNA 573
V+DVGLRGLTSKRQMKIM+RWMREKQKLRLICDHDGPHKQFLYTTWFTNPKNA
Sbjct: 559 VQDVGLRGLTSKRQMKIMMRWMREKQKLRLICDHDGPHKQFLYTTWFTNPKNA 717
Score = 123 bits (264), Expect(2) = 9e-60
Identities = 50/56 (89%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 253 MFATAARWAAKKGKPKMAPIELTTAPEQAQSITRTIFDVVKEHGPLTISDVWEHVK 420
M ATAARWAAKKGKPKMAPIEL PEQAQSITRTIFDVV+EHGPLTISDVW+HVK
Sbjct: 109 MLATAARWAAKKGKPKMAPIELPAPPEQAQSITRTIFDVVREHGPLTISDVWDHVK 276
Score = 115 bits (245), Expect(2) = 8e-49
Identities = 49/57 (85%), Positives = 51/57 (89%)
Frame = -2 / -2
Query: 422 SLTCSQTSEMVRGPCSLTTSKMVRVMDCACSGAVVSSIGAILGFPFFAAHRAAVANI 252
+LT SQTSEMV GPCSLTTSKMVRVMDCACSG SSIGAI GFPFFAAHRAAVA+I
Sbjct: 278 TLTWSQTSEMVSGPCSLTTSKMVRVMDCACSGGAGSSIGAIFGFPFFAAHRAAVASI 108
Score = 105 bits (224), Expect(2) = 8e-49
Identities = 45/53 (84%), Positives = 46/53 (86%)
Frame = -2 / -2
Query: 572 AFLGLVNHVV*RNCL*GPSWSQMSLSFCFSLIHRSMIFICLLLVKPLSPTSLT 414
AFLGLVN VV*RNCL GPSWSQM SFCFS IHR MIFICLLLV+PLSPTS T
Sbjct: 716 AFLGLVNQVV*RNCLCGPSWSQMRRSFCFSRIHRIMIFICLLLVRPLSPTSWT 558
Score = 85.4 bits (180), Expect(2) = 1e-15
Identities = 37/49 (75%), Positives = 40/49 (81%)
Frame = +3 / +3
Query: 432 EGFDKQEADEDHAAVDEGEAEAQAHLRP*RASQAVPLHDMVHQPQECAA 578
EG D+QEADEDH AVD GEAEA HLRP RA+QAVPLH +VHQ QE AA
Sbjct: 576 EGPDEQEADEDHDAVDAGEAEAPPHLRPRRAAQAVPLHHLVHQSQERAA 722
Score = 24.0 bits (46), Expect(2) = 1e-15
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +3
Query: 360 LRRRQGARP 386
LRRRQGARP
Sbjct: 216 LRRRQGARP 242
Score = 47.8 bits (98), Expect(2) = 7e-08
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = -3 / -3
Query: 577 AAHSWGW*TMSCRGTACEARHGRR* 503
AA SW W*T CRGTAC AR GRR*
Sbjct: 721 AARSWDW*TRWCRGTACAARRGRR* 647
Score = 35.0 bits (70), Expect(2) = 7e-08
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1 / -1
Query: 420 LDVLPNVRDGEGAVLLDDVE 361
LDV+P+V DGE AVL DDVE
Sbjct: 276 LDVVPDVGDGERAVLPDDVE 217
Score = 46.0 bits (94), Expect = 0.001
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -1 / -1
Query: 579 LRRILGVGEPCRVEELLVRPVMVA 508
LRR+LG+GEP VEELLVRPV+VA
Sbjct: 723 LRRVLGIGEPGGVEELLVRPVVVA 652
>LOC_Os12g14080:12012.t01274:unspliced-genomic expressed protein|
Length = 1825
Score = 43.7 bits (89), Expect(4) = 5e-17
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +3
Query: 1538 ERRGTGGAAVGRPPVLSKEMNSTIVSGANTLKGDSNP 1648
++ G G A + PVLSKE+ ST V GAN LK S+P
Sbjct: 1290 KKGGKGAADAAKTPVLSKELKSTTVFGANILKEGSDP 1400
Score = 36.3 bits (73), Expect(4) = 5e-17
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3 / +3
Query: 1413 VRTIDPGKPLSLTSVLKPGVIPRDAA 1490
V++ PG ++L VLK GVIPRDAA
Sbjct: 1170 VKSFHPGMAMALRRVLKHGVIPRDAA 1247
Score = 31.8 bits (63), Expect(4) = 5e-17
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +1 / +3
Query: 1696 VLSELWRKHARALFCEDLSCFVKLDNWDCIK 1788
+LSEL RK A+ L EDL FVKL N IK
Sbjct: 1461 MLSELRRKDAKTLPYEDLKRFVKLVNRARIK 1553
Score = 31.3 bits (62), Expect(4) = 5e-17
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 1646 PDSE*PGWWWDLVDKCP 1696
PDSE P W W L+DK P
Sbjct: 1410 PDSEYPEWLWHLLDKRP 1460
Score = 40.5 bits (82), Expect(4) = 1e-15
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -1 / -1
Query: 1647 GLESPFRVLAPDTIVLFISLLSTGGLPTAAPPVP 1546
G + R+ AP+T+VL SLLSTG L +A P P
Sbjct: 1399 GSDPSLRIFAPNTVVLLSSLLSTGVLAASAAPFP 1298
Score = 33.6 bits (67), Expect(4) = 1e-15
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = -2 / -1
Query: 1787 LMQSQLSNLTKQLRSSQNSALACFLQSSLS 1698
L++++ ++LT + RSS S LA FL+SSLS
Sbjct: 1552 LIRARFTSLTNRFRSS*GSVLASFLRSSLS 1463
Score = 32.7 bits (65), Expect(4) = 1e-15
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3 / -1
Query: 1489 AASLGITPGFNTLVKDSGFPGSIVLT 1412
AASLGITP F+TL+ PG +LT
Sbjct: 1246 AASLGITPCFSTLLNAIAIPGWKLLT 1169
Score = 31.8 bits (63), Expect(4) = 1e-15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3 / -3
Query: 1696 RTLVNQVPPPARLLRIWIRIPLQ 1628
R LV QVP P R+ RIW+ ++
Sbjct: 1460 RALVEQVPQPLRVFRIWLEFRIR 1392
Score = 30.4 bits (60), Expect(3) = 7e-06
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3 / -3
Query: 1657 LRIWIRIPLQGIGSRHNCTIHFFAEH 1580
L IR L+ I +H CT+ FFAEH
Sbjct: 1409 LEFRIRPLLEDICPKHCCTLKFFAEH 1332
Score = 29.0 bits (57), Expect(3) = 7e-06
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1 / -1
Query: 1695 GHLSTRSHHQPGYSESG 1645
G LS+R H GYSESG
Sbjct: 1459 GRLSSRCHSHSGYSESG 1409
Score = 28.1 bits (55), Expect(3) = 7e-06
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / -3
Query: 1785 DAIPVVQLDETTQVFTKQCPCMFPPKLAEY 1696
D V QLDE QVF + +FPP+L ++
Sbjct: 1550 DPSSVHQLDEPFQVFIGERLGIFPPQLTQH 1461
Score = 38.2 bits (77), Expect(2) = 0.005
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1 / +2
Query: 1564 CW*TSSAQQRNE*YNCVWSQYPEGGF*S 1647
C * AQQR YN VW +YP+GG *S
Sbjct: 1316 CC*NPCAQQRT*EYNSVWGKYPQGGV*S 1399
Score = 23.1 bits (44), Expect(2) = 0.005
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3 / +2
Query: 1707 ALEETCKGTVL*RPELFR 1760
A EE C+ L*RPE R
Sbjct: 1472 AAEERCQDAPL*RPETVR 1525
>LOC_Os01g14490:12001.t01307:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 4730
Score = 27.6 bits (54), Expect(3) = 0.042
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2 / -1
Query: 1745 SSQNSALACFLQSSLSTDTCQPGPTTSQATQNLD*NPPS 1629
SS S L+ S+LST T S+ T +L *+PPS
Sbjct: 482 SSSLSTLSYSSPSTLSTATSNTFSAISKITSSLP*SPPS 366
Score = 24.0 bits (46), Expect(3) = 0.042
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 1549 SPSFPWLHQPL*F*PQTN 1496
+P P HQPL F PQT+
Sbjct: 199 TPPPPHSHQPLSFPPQTS 146
Score = 22.1 bits (42), Expect(3) = 0.042
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2 / -2
Query: 1595 FLC*ALEVYQQPRHLFPFFP 1536
FLC L + P HL P P
Sbjct: 265 FLCIPLPLNYHPPHLHPNLP 206
>LOC_Os08g30790:12008.t02830:unspliced-genomic hypersensitive-induced response protein, putative, expressed|
Length = 4192
Score = 25.8 bits (50), Expect(2) = 3.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 1318 SHDLPNALIICRTFFLSML 1374
S D+ + + ICRT FLSML
Sbjct: 2352 SDDVYHFVDICRTMFLSML 2408
Score = 25.4 bits (49), Expect(2) = 3.6
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2 / +3
Query: 1277 IFVYSNILLLHICTHMTF 1330
+ +Y NIL++ +CT++ F
Sbjct: 2235 LLLYDNILMMVMCTYLCF 2288
>LOC_Os01g42820:12001.t03799:unspliced-genomic heterogeneous nuclear ribonucleoprotein A3 homolog 2, putative,|
expressed
Length = 3433
Score = 27.2 bits (53), Expect(2) = 4.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2 / +2
Query: 1190 YITFQLQYIKI*WHKQPVITRTQN*FPTIIFVYSNILLLHICTHMTF 1330
Y+ L ++ WH T+ F IF+Y I L++I H +F
Sbjct: 2312 YLFHFLPFLLHNWHAAYCFTQNICNFEVAIFLYKIIRLINILYHESF 2452
Score = 23.5 bits (45), Expect(2) = 4.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 1354 TFFLSMLVCFLFFFSVDSY 1410
+FF + + FLFFF ++ Y
Sbjct: 2447 SFFFVISLLFLFFFVINIY 2503
>LOC_Os03g11360:12003.t00936:unspliced-genomic LAP4 protein, putative, expressed|
Length = 3561
Score = 31.8 bits (63), Expect(2) = 7.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 1294 HTPSTYMHSHDLPNALIICRTFFLSMLVCFLFF 1392
+T +T+ H+H N +CR FLS ++ L F
Sbjct: 2545 YTAATHTHTHTHTNMSALCRRTFLSRMLYHLIF 2643
Score = 24.4 bits (47), Expect(2) = 7.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 1413 VRTIDPGKPLSLTSVLKPG 1469
VRT + P S+TSV +PG
Sbjct: 2891 VRTYEYAFPSSITSVFEPG 2947
>LOC_Os01g56200:12001.t05029:unspliced-genomic regulatory protein NPR1, putative, expressed|
Length = 4134
Score = 32.7 bits (65), Expect = 9.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1 / +2
Query: 1990 HCCFSCSC*DAVAYVSCSKSCNTSLILFH 2076
HC FSCSC + + SK CN + H
Sbjct: 2711 HCIFSCSCICKIIFSCRSKGCNANCTSRH 2797
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 749,686,912
Number of extensions: 11252680
Number of successful extensions: 46234
Number of sequences better than 10.0: 23
Length of query: 697
Length of database: 55,613,886
Length adjustment: 52
Effective length of query: 645
Effective length of database: 52,687,430
Effective search space: 33983392350
Effective search space used: 33983392350
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)