ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf72p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q66282:POLG_CXB3W Genome polyprotein [Contains: Capsid protein V... 33 3.6
2P03313:POLG_CXB3N Genome polyprotein [Contains: Capsid protein V... 33 3.6
3P13900:POLG_SVDVU Genome polyprotein [Contains: Capsid protein V... 32 8.0
4P16604:POLG_SVDVH Genome polyprotein [Contains: Capsid protein V... 32 8.0
5Q03053:POLG_CXB5P Genome polyprotein [Contains: Capsid protein V... 32 8.0

>Q66282:POLG_CXB3W Genome polyprotein [Contains: Capsid protein VP4 - Coxsackievirus B3|
            (strain Woodruff)
          Length = 2185
 Score = 33.5 bits (75), Expect = 3.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 1661 PGWWWDLVDKCPYSASFGGNMQGH 1732
            PGWWW L D       FG NMQ H
Sbjct: 145  PGWWWKLPDALSNLGLFGQNMQYH 168



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>P03313:POLG_CXB3N Genome polyprotein [Contains: Capsid protein VP4 - Coxsackievirus B3|
            (strain Nancy)
          Length = 2185

 Score = 33.5 bits (75), Expect = 3.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 1661 PGWWWDLVDKCPYSASFGGNMQGH 1732
            PGWWW L D       FG NMQ H
Sbjct: 145  PGWWWKLPDALSNLGLFGQNMQYH 168



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>P13900:POLG_SVDVU Genome polyprotein [Contains: Capsid protein VP4 - Swine vesicular|
            disease virus (strain UKG/27/72) (SVDV)
          Length = 2185

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 1661 PGWWWDLVDKCPYSASFGGNMQGH 1732
            PGWWW   D       FG NMQ H
Sbjct: 145  PGWWWKFPDALSNMGLFGQNMQYH 168



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>P16604:POLG_SVDVH Genome polyprotein [Contains: Capsid protein VP4 - Swine vesicular|
            disease virus (strain H/3 '76) (SVDV)
          Length = 2185

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 1661 PGWWWDLVDKCPYSASFGGNMQGH 1732
            PGWWW   D       FG NMQ H
Sbjct: 145  PGWWWKFPDALSNMGLFGQNMQYH 168



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>Q03053:POLG_CXB5P Genome polyprotein [Contains: Capsid protein VP4 - Coxsackievirus B5|
            (strain Peterborough / 1954/UK/85)
          Length = 2185

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 1661 PGWWWDLVDKCPYSASFGGNMQGH 1732
            PGWWW   D       FG NMQ H
Sbjct: 145  PGWWWKFPDALSNMGLFGQNMQYH 168


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 318,980,159
Number of extensions: 6359320
Number of successful extensions: 15083
Number of sequences better than 10.0: 5
Number of HSP's gapped: 15071
Number of HSP's successfully gapped: 5
Length of query: 697
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 577
Effective length of database: 67,771,039
Effective search space: 39103889503
Effective search space used: 39103889503
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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