ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001055986.1| Oryza sativa (japonica cultivar-group) Os03g... 492 e-135
2dbj|AK103703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 492 e-135
3gb|AY109149.1| Zea mays PCO079137 mRNA sequence 424 e-115
4ref|NM_001049524.1| Oryza sativa (japonica cultivar-group) Os01g... 137 8e-29
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 137 8e-29
6dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 137 8e-29
7gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome... 121 5e-24
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 5e-24
9ref|XM_397320.3| PREDICTED: Apis mellifera similar to orange CG3... 48 0.055
10gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 44 0.85
11gb|BC071511.1| Danio rerio selenoprotein 15, mRNA (cDNA clone MG... 44 0.85
12ref|NM_114946.2| Arabidopsis thaliana unknown protein (AT3G50860... 42 3.4
13gb|BC073089.1| Xenopus laevis cDNA clone IMAGE:4755609, partial cds 42 3.4
14ref|NM_178294.2| Danio rerio selenoprotein 15 (sep15), mRNA >gi|... 42 3.4
15gb|AY096709.1| Arabidopsis thaliana putative clathrin coat assem... 42 3.4
16gb|AY065287.1| Arabidopsis thaliana putative clathrin coat assem... 42 3.4
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.4
18emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 o... 42 3.4
19gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Can... 42 3.4
20gb|BC097626.1| Xenopus laevis cDNA clone IMAGE:5511302 42 3.4
21emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in... 42 3.4
22dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.4
23emb|BX004880.9| Zebrafish DNA sequence from clone CH211-69B7 in ... 42 3.4
24emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in l... 42 3.4
25emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 i... 42 3.4

>ref|NM_001055986.1| Oryza sativa (japonica cultivar-group) Os03g0228400 (Os03g0228400)
           mRNA, complete cds
          Length = 1187
 Score =  492 bits (248), Expect = e-135
 Identities = 458/528 (86%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62
           |||||||||| || ||||||||  |  | |||||||||||||| |||||||| || ||||
Sbjct: 289 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 348

                                                                       
Query: 63  ctctgggcaagccccgcctcctcaagttctacaatttccaggacccggagaagcatcagg 122
           | | ||||||||| |||||||||||||||||||  | ||||  ||| |||||||||||||
Sbjct: 349 cgcagggcaagccgcgcctcctcaagttctacagctaccagccccccgagaagcatcagg 408

                                                                       
Query: 123 agctggtccgcagcgtcttccagtcgttgtctgcgaggccggagggtgtgagcaatttcg 182
           | || |||||| |||||||||||| ||||||||| ||||||||  |||| ||||||||||
Sbjct: 409 acctcgtccgcggcgtcttccagttgttgtctgcaaggccggacagtgtcagcaatttcg 468

                                                                       
Query: 183 tcgaggccgatgcaatctttggaccgggaacgaaactggtctacaagcatttggcaacac 242
           || |||  ||||||||||||||||||||| ||||| |||||||||| |||||||| ||| 
Sbjct: 469 tcaaggttgatgcaatctttggaccgggagcgaaattggtctacaaacatttggccacat 528

                                                                       
Query: 243 tatacttcatctttgtctttgatagctcggagaatgagcttgccatgctcgacctcgtac 302
           | |||||  | ||||||||||||||||| || ||||| |||||  |||| || || ||||
Sbjct: 529 tgtactttgtttttgtctttgatagctctgaaaatgaacttgcggtgcttgatcttgtac 588

                                                                       
Query: 303 aagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtat 362
           |||||||||||||||||||| | || |||||||||||||| ||||||||||| || ||||
Sbjct: 589 aagtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtat 648

                                                                       
Query: 363 ttaacttcaacaagcttcacacagttttggatgaaatgatactgggaggacaagtgattg 422
           |||||||||||||||| || ||| |||| |||||||||||||| || |||||||||||||
Sbjct: 649 ttaacttcaacaagctgcatacaattttagatgaaatgatacttgggggacaagtgattg 708

                                                                       
Query: 423 aaacaagttcagagcaaataatgaaatctgtagaagagattgcgaggttagagaaacaat 482
           |||||||||||||||||||||||| |||||| ||||||||||| ||| | |||||||| |
Sbjct: 709 aaacaagttcagagcaaataatgagatctgtcgaagagattgcaaggctggagaaacagt 768

                                                           
Query: 483 caagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
           ||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 769 caaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 816



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>dbj|AK103703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N08, full
           insert sequence
          Length = 1188

 Score =  492 bits (248), Expect = e-135
 Identities = 458/528 (86%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62
           |||||||||| || ||||||||  |  | |||||||||||||| |||||||| || ||||
Sbjct: 290 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 349

                                                                       
Query: 63  ctctgggcaagccccgcctcctcaagttctacaatttccaggacccggagaagcatcagg 122
           | | ||||||||| |||||||||||||||||||  | ||||  ||| |||||||||||||
Sbjct: 350 cgcagggcaagccgcgcctcctcaagttctacagctaccagccccccgagaagcatcagg 409

                                                                       
Query: 123 agctggtccgcagcgtcttccagtcgttgtctgcgaggccggagggtgtgagcaatttcg 182
           | || |||||| |||||||||||| ||||||||| ||||||||  |||| ||||||||||
Sbjct: 410 acctcgtccgcggcgtcttccagttgttgtctgcaaggccggacagtgtcagcaatttcg 469

                                                                       
Query: 183 tcgaggccgatgcaatctttggaccgggaacgaaactggtctacaagcatttggcaacac 242
           || |||  ||||||||||||||||||||| ||||| |||||||||| |||||||| ||| 
Sbjct: 470 tcaaggttgatgcaatctttggaccgggagcgaaattggtctacaaacatttggccacat 529

                                                                       
Query: 243 tatacttcatctttgtctttgatagctcggagaatgagcttgccatgctcgacctcgtac 302
           | |||||  | ||||||||||||||||| || ||||| |||||  |||| || || ||||
Sbjct: 530 tgtactttgtttttgtctttgatagctctgaaaatgaacttgcggtgcttgatcttgtac 589

                                                                       
Query: 303 aagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtat 362
           |||||||||||||||||||| | || |||||||||||||| ||||||||||| || ||||
Sbjct: 590 aagtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtat 649

                                                                       
Query: 363 ttaacttcaacaagcttcacacagttttggatgaaatgatactgggaggacaagtgattg 422
           |||||||||||||||| || ||| |||| |||||||||||||| || |||||||||||||
Sbjct: 650 ttaacttcaacaagctgcatacaattttagatgaaatgatacttgggggacaagtgattg 709

                                                                       
Query: 423 aaacaagttcagagcaaataatgaaatctgtagaagagattgcgaggttagagaaacaat 482
           |||||||||||||||||||||||| |||||| ||||||||||| ||| | |||||||| |
Sbjct: 710 aaacaagttcagagcaaataatgagatctgtcgaagagattgcaaggctggagaaacagt 769

                                                           
Query: 483 caagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
           ||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 770 caaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 817



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>gb|AY109149.1| Zea mays PCO079137 mRNA sequence
          Length = 1028

 Score =  424 bits (214), Expect = e-115
 Identities = 415/482 (86%)
 Strand = Plus / Plus

                                                                       
Query: 32  gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91
           ||||||||||||||||||||||| |||||||| | || |||||||||||| |||||||||
Sbjct: 292 gccatgatccaggcggtgatggtgatcagcacccaggccaagccccgccttctcaagttc 351

                                                                       
Query: 92  tacaatttccaggacccggagaagcatcaggagctggtccgcagcgtcttccagtcgttg 151
           |||| |||||||   || |||||||||||||| || |||||| | |||||||| |   | 
Sbjct: 352 tacagtttccagccacccgagaagcatcaggacctcgtccgctgtgtcttccaattactc 411

                                                                       
Query: 152 tctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggaccggga 211
           ||||| ||||| ||| | | ||||||||| ||| |||  ||  | |||||||| ||||||
Sbjct: 412 tctgcaaggcccgagagcgcgagcaattttgtcaaggtggactccatctttggcccggga 471

                                                                       
Query: 212 acgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatagctcg 271
           || ||| ||||||||||||||||||| |||||||||||  | ||||||||||||||||| 
Sbjct: 472 acaaaaatggtctacaagcatttggccacactatactttgtttttgtctttgatagctct 531

                                                                       
Query: 272 gagaatgagcttgccatgctcgacctcgtacaagtttttgttgaaacattgaataggtgc 331
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct: 532 gagaacgagcttgccatgctcgacctcgtacaagtgtttgttgaaacattggacagatgc 591

                                                                       
Query: 332 ttcaagaatgtatgtgagcttgatattgtatttaacttcaacaagcttcacacagttttg 391
           |||||||||||||| |||||||| || |||||||||||||||||||| |||||  |||||
Sbjct: 592 ttcaagaatgtatgcgagcttgacatcgtatttaacttcaacaagctgcacaccattttg 651

                                                                       
Query: 392 gatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatgaaatct 451
           ||||| ||||||  ||| ||||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 652 gatgagatgatatcggggggacaggtgatcgaaacaagttcagaacagataatgaaatct 711

                                                                       
Query: 452 gtagaagagattgcgaggttagagaaacaatcaagcacaactagcctcataccaaagtcg 511
           || ||||||||||  ||| | ||||||||||| |||||||| ||| ||||||| ||||||
Sbjct: 712 gtggaagagattgaaaggctggagaaacaatcgagcacaaccagcttcatacccaagtcg 771

             
Query: 512 at 513
           ||
Sbjct: 772 at 773



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>ref|NM_001049524.1| Oryza sativa (japonica cultivar-group) Os01g0353500 (Os01g0353500)
           mRNA, complete cds
          Length = 222

 Score =  137 bits (69), Expect = 8e-29
 Identities = 156/185 (84%)
 Strand = Plus / Plus

                                                                       
Query: 101 caggacccggagaagcatcaggagctggtccgcagcgtcttccagtcgttgtctgcgagg 160
           |||| ||| |||||||||||||| || ||||||  ||||||||||| ||||||||| |||
Sbjct: 4   caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagttgttgtctgcaagg 63

                                                                       
Query: 161 ccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggaccgggaacgaaactg 220
           |||||  |||| |||||||||||| |||  ||||||||||||||||||||| ||||| ||
Sbjct: 64  ccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggaccgggagcgaaattg 123

                                                                       
Query: 221 gtctacaagcatttggcaacactatacttcatctttgtctttgatagctcggagaatgag 280
            ||||||| |||||||| ||| | |||||    |||||||||||| |||| || ||||| 
Sbjct: 124 atctacaaacatttggccacattgtacttaggttttgtctttgatggctctgaaaatgaa 183

                
Query: 281 cttgc 285
           |||||
Sbjct: 184 cttgc 188



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  137 bits (69), Expect = 8e-29
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                            
Query: 387      ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446
                ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 14158172 ttttggatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 14158231

                                         
Query: 447      aatctgtagaagagattgcgaggtt 471
                 |||||||||||||||||| |||||
Sbjct: 14158232 gatctgtagaagagattgcaaggtt 14158256



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                            
Query: 304      agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363
                ||||||||||||||||||| | || |||||||||||||| ||||||||| | ||||||||
Sbjct: 14157661 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttcacattgtatt 14157720

                             
Query: 364      taacttcaacaag 376
                |||||||||||||
Sbjct: 14157721 taacttcaacaag 14157733



 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 32       gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91
                |||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||||
Sbjct: 14154119 gccatgatccaggccgtgatggtcatgagcacgcagggcaagccgcgcctcctcaagttc 14154178

                    
Query: 92       taca 95
                ||||
Sbjct: 14154179 taca 14154182



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 148      gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207
                ||||||||| ||||||||  |||| |||||||||||| |||  |||||||||||||||||
Sbjct: 14154492 gttgtctgcaaggccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggacc 14154551

                  
Query: 208      gg 209
                ||
Sbjct: 14154552 gg 14154553



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 473      gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
                |||||||| |||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 14158342 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 14158399



 Score = 44.1 bits (22), Expect = 0.85
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 101      caggacccggagaagcatcaggagctggtccgcagcgtcttccagt 146
                |||| ||| |||||||||||||| || ||||||  |||||||||||
Sbjct: 14154370 caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagt 14154415



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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1102E12
          Length = 155692

 Score =  137 bits (69), Expect = 8e-29
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                         
Query: 387   ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446
             ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 97886 ttttggatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 97945

                                      
Query: 447   aatctgtagaagagattgcgaggtt 471
              |||||||||||||||||| |||||
Sbjct: 97946 gatctgtagaagagattgcaaggtt 97970



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                         
Query: 304   agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363
             ||||||||||||||||||| | || |||||||||||||| ||||||||| | ||||||||
Sbjct: 97375 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttcacattgtatt 97434

                          
Query: 364   taacttcaacaag 376
             |||||||||||||
Sbjct: 97435 taacttcaacaag 97447



 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 32    gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91
             |||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||||
Sbjct: 93833 gccatgatccaggccgtgatggtcatgagcacgcagggcaagccgcgcctcctcaagttc 93892

                 
Query: 92    taca 95
             ||||
Sbjct: 93893 taca 93896



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 148   gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207
             ||||||||| ||||||||  |||| |||||||||||| |||  |||||||||||||||||
Sbjct: 94206 gttgtctgcaaggccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggacc 94265

               
Query: 208   gg 209
             ||
Sbjct: 94266 gg 94267



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 473   gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
             |||||||| |||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 98056 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 98113



 Score = 44.1 bits (22), Expect = 0.85
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 101   caggacccggagaagcatcaggagctggtccgcagcgtcttccagt 146
             |||| ||| |||||||||||||| || ||||||  |||||||||||
Sbjct: 94084 caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagt 94129



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>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03,
             complete sequence
          Length = 82352

 Score =  121 bits (61), Expect = 5e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                         
Query: 387   ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446
             |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 71084 ttttagatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 71025

                                      
Query: 447   aatctgtagaagagattgcgaggtt 471
              |||||| ||||||||||| |||||
Sbjct: 71024 gatctgtcgaagagattgcaaggtt 71000



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                         
Query: 304   agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363
             ||||||||||||||||||| | || |||||||||||||| ||||||||||| || |||||
Sbjct: 71580 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtatt 71521

                          
Query: 364   taacttcaacaag 376
             |||||||||||||
Sbjct: 71520 taacttcaacaag 71508



 Score = 81.8 bits (41), Expect = 4e-12
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                         
Query: 3     tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62
             |||||||||| || ||||||||  |  | |||||||||||||| |||||||| || ||||
Sbjct: 73017 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 72958

                                              
Query: 63    ctctgggcaagccccgcctcctcaagttctaca 95
             | | ||||||||| |||||||||||||||||||
Sbjct: 72957 cgcagggcaagccgcgcctcctcaagttctaca 72925



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 473   gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
             |||||||| |||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 70914 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 70857



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 148   gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207
             ||||||||| ||||||||  |||| |||||||||||| |||  |||||||||||||||||
Sbjct: 72608 gttgtctgcaaggccggacagtgtcagcaatttcgtcaaggttgatgcaatctttggacc 72549

               
Query: 208   gg 209
             ||
Sbjct: 72548 gg 72547



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 208   gggaacgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatag 267
             |||| ||||| |||||||||| |||||||| ||| | |||||  | ||||||||||||||
Sbjct: 72180 gggagcgaaattggtctacaaacatttggccacattgtactttgtttttgtctttgatag 72121

                               
Query: 268   ctcggagaatgagcttgc 285
             ||| || ||||| |||||
Sbjct: 72120 ctctgaaaatgaacttgc 72103



 Score = 50.1 bits (25), Expect = 0.014
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 110   gagaagcatcaggagctggtccgcagcgtcttccagt 146
             |||||||||||||| || |||||| ||||||||||||
Sbjct: 72736 gagaagcatcaggacctcgtccgcggcgtcttccagt 72700



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  121 bits (61), Expect = 5e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                           
Query: 387     ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446
               |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 6752874 ttttagatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 6752933

                                        
Query: 447     aatctgtagaagagattgcgaggtt 471
                |||||| ||||||||||| |||||
Sbjct: 6752934 gatctgtcgaagagattgcaaggtt 6752958



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                           
Query: 304     agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363
               ||||||||||||||||||| | || |||||||||||||| ||||||||||| || |||||
Sbjct: 6752378 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtatt 6752437

                            
Query: 364     taacttcaacaag 376
               |||||||||||||
Sbjct: 6752438 taacttcaacaag 6752450



 Score = 81.8 bits (41), Expect = 4e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                           
Query: 3       tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62
               |||||||||| || ||||||||  |  | |||||||||||||| |||||||| || ||||
Sbjct: 6750941 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 6751000

                                                
Query: 63      ctctgggcaagccccgcctcctcaagttctaca 95
               | | ||||||||| |||||||||||||||||||
Sbjct: 6751001 cgcagggcaagccgcgcctcctcaagttctaca 6751033



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                           
Query: 148     gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207
               ||||||||| ||||||||  |||| |||||||||||| |||  |||||||||||||||||
Sbjct: 6751350 gttgtctgcaaggccggacagtgtcagcaatttcgtcaaggttgatgcaatctttggacc 6751409

                 
Query: 208     gg 209
               ||
Sbjct: 6751410 gg 6751411



 Score = 67.9 bits (34), Expect = 6e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                         
Query: 473     gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530
               |||||||| |||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 6753044 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 6753101



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                           
Query: 208     gggaacgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatag 267
               |||| ||||| |||||||||| |||||||| ||| | |||||  | ||||||||||||||
Sbjct: 6751778 gggagcgaaattggtctacaaacatttggccacattgtactttgtttttgtctttgatag 6751837

                                 
Query: 268     ctcggagaatgagcttgc 285
               ||| || ||||| |||||
Sbjct: 6751838 ctctgaaaatgaacttgc 6751855



 Score = 50.1 bits (25), Expect = 0.014
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 110     gagaagcatcaggagctggtccgcagcgtcttccagt 146
               |||||||||||||| || |||||| ||||||||||||
Sbjct: 6751222 gagaagcatcaggacctcgtccgcggcgtcttccagt 6751258



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>ref|XM_397320.3| PREDICTED: Apis mellifera similar to orange CG3029-PA, transcript
           variant 1 (LOC413881), mRNA
          Length = 1540

 Score = 48.1 bits (24), Expect = 0.055
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 300 tacaagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgat 355
           ||||||||||||||||||||||| |||  || ||  | ||||||||||| ||||||
Sbjct: 718 tacaagtttttgttgaaacattggataaatgttttgaaaatgtatgtgaacttgat 773



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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 592     aattgggatcatatcttcagtg 613
               ||||||||||||||||||||||
Sbjct: 3729180 aattgggatcatatcttcagtg 3729159



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>gb|BC071511.1| Danio rerio selenoprotein 15, mRNA (cDNA clone MGC:86882
           IMAGE:6904388), complete cds
          Length = 971

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 368 ttcaacaagcttcacacagttt 389
           ||||||||||||||||||||||
Sbjct: 717 ttcaacaagcttcacacagttt 696



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>ref|NM_114946.2| Arabidopsis thaliana unknown protein (AT3G50860) mRNA, complete cds
          Length = 1088

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319
           ||||||||||| ||||| || ||| | |||||| |||||||||||
Sbjct: 590 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 634



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>gb|BC073089.1| Xenopus laevis cDNA clone IMAGE:4755609, partial cds
          Length = 3956

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 147 cgttgtctgcgaggccggagg 167
           |||||||||||||||||||||
Sbjct: 355 cgttgtctgcgaggccggagg 335



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>ref|NM_178294.2| Danio rerio selenoprotein 15 (sep15), mRNA
 gb|AY221263.1| Danio rerio 15 kDa selenoprotein SeP15 mRNA, complete cds
          Length = 945

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 368 ttcaacaagcttcacacagtt 388
           |||||||||||||||||||||
Sbjct: 706 ttcaacaagcttcacacagtt 686



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>gb|AY096709.1| Arabidopsis thaliana putative clathrin coat assembly protein
           (At3g50860) mRNA, complete cds
          Length = 532

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319
           ||||||||||| ||||| || ||| | |||||| |||||||||||
Sbjct: 241 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 285



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>gb|AY065287.1| Arabidopsis thaliana putative clathrin coat assembly protein
           (At3g50860) mRNA, complete cds
          Length = 1104

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319
           ||||||||||| ||||| || ||| | |||||| |||||||||||
Sbjct: 590 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 634



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 6        cgctcgcgtcctcctcatcgtcggcggcc 34
                ||||| |||||||||| ||||||||||||
Sbjct: 18195001 cgctctcgtcctcctcctcgtcggcggcc 18194973



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>emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 on chromosome 22q12.1, complete
              sequence
          Length = 109859

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 572    aacttgagcaaaagaaatcaa 592
              |||||||||||||||||||||
Sbjct: 105257 aacttgagcaaaagaaatcaa 105277



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>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 161735

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 652  acatgaaaacttattggctga 672
            |||||||||||||||||||||
Sbjct: 4152 acatgaaaacttattggctga 4172



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>gb|BC097626.1| Xenopus laevis cDNA clone IMAGE:5511302
          Length = 3911

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 147 cgttgtctgcgaggccggagg 167
           |||||||||||||||||||||
Sbjct: 331 cgttgtctgcgaggccggagg 311



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>emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in linkage group 8
             Contains four novel genes for a protein similar to MHC
             class II alpha chain proteins, the novel retrotransposon
             SUSHIIDR1 similar to SUSHI-ICHI (Fugu rubripes), a
             putative novel gene, a novel gene for a protein similar to
             MHC class I heavy chain proteins and two novel genes for a
             protein similar toMHC class II beta chain, complete
             sequence
          Length = 89232

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   acacagttttggatgaaatga 401
             |||||||||||||||||||||
Sbjct: 69438 acacagttttggatgaaatga 69418



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>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556A05
          Length = 158189

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 6     cgctcgcgtcctcctcatcgtcggcggcc 34
             ||||| |||||||||| ||||||||||||
Sbjct: 43725 cgctctcgtcctcctcctcgtcggcggcc 43697



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>emb|BX004880.9| Zebrafish DNA sequence from clone CH211-69B7 in linkage group 11,
              complete sequence
          Length = 194839

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 787    ggctctgtgaccatgtgcaaatgtt 811
              |||||||||| ||||||||||||||
Sbjct: 163001 ggctctgtgaacatgtgcaaatgtt 162977



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>emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in linkage group 1, complete
              sequence
          Length = 228767

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    tacaagtttttgttgaaacat 320
              |||||||||||||||||||||
Sbjct: 111486 tacaagtttttgttgaaacat 111506



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>emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 in linkage group 8
             Contains a novel and partly predicted gene for a protein
             similar to major histocompatibility complex class II DCB
             gene (mhc2dcb), MHC2DBC related sequence (mhc2dbc-rs),
             part of a novel gene for a protein similar to MHC class II
             alpha chain, the fzd10 gene for frizzled homologue 10 and
             a GpC island, complete sequence
          Length = 80272

 Score = 42.1 bits (21), Expect = 3.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   acacagttttggatgaaatga 401
             |||||||||||||||||||||
Sbjct: 15766 acacagttttggatgaaatga 15746


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 163,631,473
Number of extensions: 8658349
Number of successful extensions: 170377
Number of sequences better than 10.0: 25
Number of HSP's gapped: 170375
Number of HSP's successfully gapped: 48
Length of query: 894
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 871
Effective length of database: 18,503,978,556
Effective search space: 16116965322276
Effective search space used: 16116965322276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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