| Clone Name | FLbaf76f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001055986.1| Oryza sativa (japonica cultivar-group) Os03g0228400 (Os03g0228400) mRNA, complete cds Length = 1187 Score = 492 bits (248), Expect = e-135 Identities = 458/528 (86%) Strand = Plus / Plus Query: 3 tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62 |||||||||| || |||||||| | | |||||||||||||| |||||||| || |||| Sbjct: 289 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 348 Query: 63 ctctgggcaagccccgcctcctcaagttctacaatttccaggacccggagaagcatcagg 122 | | ||||||||| ||||||||||||||||||| | |||| ||| ||||||||||||| Sbjct: 349 cgcagggcaagccgcgcctcctcaagttctacagctaccagccccccgagaagcatcagg 408 Query: 123 agctggtccgcagcgtcttccagtcgttgtctgcgaggccggagggtgtgagcaatttcg 182 | || |||||| |||||||||||| ||||||||| |||||||| |||| |||||||||| Sbjct: 409 acctcgtccgcggcgtcttccagttgttgtctgcaaggccggacagtgtcagcaatttcg 468 Query: 183 tcgaggccgatgcaatctttggaccgggaacgaaactggtctacaagcatttggcaacac 242 || ||| ||||||||||||||||||||| ||||| |||||||||| |||||||| ||| Sbjct: 469 tcaaggttgatgcaatctttggaccgggagcgaaattggtctacaaacatttggccacat 528 Query: 243 tatacttcatctttgtctttgatagctcggagaatgagcttgccatgctcgacctcgtac 302 | ||||| | ||||||||||||||||| || ||||| ||||| |||| || || |||| Sbjct: 529 tgtactttgtttttgtctttgatagctctgaaaatgaacttgcggtgcttgatcttgtac 588 Query: 303 aagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtat 362 |||||||||||||||||||| | || |||||||||||||| ||||||||||| || |||| Sbjct: 589 aagtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtat 648 Query: 363 ttaacttcaacaagcttcacacagttttggatgaaatgatactgggaggacaagtgattg 422 |||||||||||||||| || ||| |||| |||||||||||||| || ||||||||||||| Sbjct: 649 ttaacttcaacaagctgcatacaattttagatgaaatgatacttgggggacaagtgattg 708 Query: 423 aaacaagttcagagcaaataatgaaatctgtagaagagattgcgaggttagagaaacaat 482 |||||||||||||||||||||||| |||||| ||||||||||| ||| | |||||||| | Sbjct: 709 aaacaagttcagagcaaataatgagatctgtcgaagagattgcaaggctggagaaacagt 768 Query: 483 caagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 ||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 769 caaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 816
>dbj|AK103703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N08, full insert sequence Length = 1188 Score = 492 bits (248), Expect = e-135 Identities = 458/528 (86%) Strand = Plus / Plus Query: 3 tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62 |||||||||| || |||||||| | | |||||||||||||| |||||||| || |||| Sbjct: 290 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 349 Query: 63 ctctgggcaagccccgcctcctcaagttctacaatttccaggacccggagaagcatcagg 122 | | ||||||||| ||||||||||||||||||| | |||| ||| ||||||||||||| Sbjct: 350 cgcagggcaagccgcgcctcctcaagttctacagctaccagccccccgagaagcatcagg 409 Query: 123 agctggtccgcagcgtcttccagtcgttgtctgcgaggccggagggtgtgagcaatttcg 182 | || |||||| |||||||||||| ||||||||| |||||||| |||| |||||||||| Sbjct: 410 acctcgtccgcggcgtcttccagttgttgtctgcaaggccggacagtgtcagcaatttcg 469 Query: 183 tcgaggccgatgcaatctttggaccgggaacgaaactggtctacaagcatttggcaacac 242 || ||| ||||||||||||||||||||| ||||| |||||||||| |||||||| ||| Sbjct: 470 tcaaggttgatgcaatctttggaccgggagcgaaattggtctacaaacatttggccacat 529 Query: 243 tatacttcatctttgtctttgatagctcggagaatgagcttgccatgctcgacctcgtac 302 | ||||| | ||||||||||||||||| || ||||| ||||| |||| || || |||| Sbjct: 530 tgtactttgtttttgtctttgatagctctgaaaatgaacttgcggtgcttgatcttgtac 589 Query: 303 aagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtat 362 |||||||||||||||||||| | || |||||||||||||| ||||||||||| || |||| Sbjct: 590 aagtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtat 649 Query: 363 ttaacttcaacaagcttcacacagttttggatgaaatgatactgggaggacaagtgattg 422 |||||||||||||||| || ||| |||| |||||||||||||| || ||||||||||||| Sbjct: 650 ttaacttcaacaagctgcatacaattttagatgaaatgatacttgggggacaagtgattg 709 Query: 423 aaacaagttcagagcaaataatgaaatctgtagaagagattgcgaggttagagaaacaat 482 |||||||||||||||||||||||| |||||| ||||||||||| ||| | |||||||| | Sbjct: 710 aaacaagttcagagcaaataatgagatctgtcgaagagattgcaaggctggagaaacagt 769 Query: 483 caagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 ||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 770 caaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 817
>gb|AY109149.1| Zea mays PCO079137 mRNA sequence Length = 1028 Score = 424 bits (214), Expect = e-115 Identities = 415/482 (86%) Strand = Plus / Plus Query: 32 gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91 ||||||||||||||||||||||| |||||||| | || |||||||||||| ||||||||| Sbjct: 292 gccatgatccaggcggtgatggtgatcagcacccaggccaagccccgccttctcaagttc 351 Query: 92 tacaatttccaggacccggagaagcatcaggagctggtccgcagcgtcttccagtcgttg 151 |||| ||||||| || |||||||||||||| || |||||| | |||||||| | | Sbjct: 352 tacagtttccagccacccgagaagcatcaggacctcgtccgctgtgtcttccaattactc 411 Query: 152 tctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggaccggga 211 ||||| ||||| ||| | | ||||||||| ||| ||| || | |||||||| |||||| Sbjct: 412 tctgcaaggcccgagagcgcgagcaattttgtcaaggtggactccatctttggcccggga 471 Query: 212 acgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatagctcg 271 || ||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 472 acaaaaatggtctacaagcatttggccacactatactttgtttttgtctttgatagctct 531 Query: 272 gagaatgagcttgccatgctcgacctcgtacaagtttttgttgaaacattgaataggtgc 331 ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | || ||| Sbjct: 532 gagaacgagcttgccatgctcgacctcgtacaagtgtttgttgaaacattggacagatgc 591 Query: 332 ttcaagaatgtatgtgagcttgatattgtatttaacttcaacaagcttcacacagttttg 391 |||||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| Sbjct: 592 ttcaagaatgtatgcgagcttgacatcgtatttaacttcaacaagctgcacaccattttg 651 Query: 392 gatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatgaaatct 451 ||||| |||||| ||| ||||| ||||| |||||||||||||| || |||||||||||| Sbjct: 652 gatgagatgatatcggggggacaggtgatcgaaacaagttcagaacagataatgaaatct 711 Query: 452 gtagaagagattgcgaggttagagaaacaatcaagcacaactagcctcataccaaagtcg 511 || |||||||||| ||| | ||||||||||| |||||||| ||| ||||||| |||||| Sbjct: 712 gtggaagagattgaaaggctggagaaacaatcgagcacaaccagcttcatacccaagtcg 771 Query: 512 at 513 || Sbjct: 772 at 773
>ref|NM_001049524.1| Oryza sativa (japonica cultivar-group) Os01g0353500 (Os01g0353500) mRNA, complete cds Length = 222 Score = 137 bits (69), Expect = 8e-29 Identities = 156/185 (84%) Strand = Plus / Plus Query: 101 caggacccggagaagcatcaggagctggtccgcagcgtcttccagtcgttgtctgcgagg 160 |||| ||| |||||||||||||| || |||||| ||||||||||| ||||||||| ||| Sbjct: 4 caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagttgttgtctgcaagg 63 Query: 161 ccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggaccgggaacgaaactg 220 ||||| |||| |||||||||||| ||| ||||||||||||||||||||| ||||| || Sbjct: 64 ccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggaccgggagcgaaattg 123 Query: 221 gtctacaagcatttggcaacactatacttcatctttgtctttgatagctcggagaatgag 280 ||||||| |||||||| ||| | ||||| |||||||||||| |||| || ||||| Sbjct: 124 atctacaaacatttggccacattgtacttaggttttgtctttgatggctctgaaaatgaa 183 Query: 281 cttgc 285 ||||| Sbjct: 184 cttgc 188
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 137 bits (69), Expect = 8e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 387 ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 14158172 ttttggatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 14158231 Query: 447 aatctgtagaagagattgcgaggtt 471 |||||||||||||||||| ||||| Sbjct: 14158232 gatctgtagaagagattgcaaggtt 14158256 Score = 97.6 bits (49), Expect = 7e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 304 agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363 ||||||||||||||||||| | || |||||||||||||| ||||||||| | |||||||| Sbjct: 14157661 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttcacattgtatt 14157720 Query: 364 taacttcaacaag 376 ||||||||||||| Sbjct: 14157721 taacttcaacaag 14157733 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 32 gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91 |||||||||||||| |||||||| || ||||| | ||||||||| ||||||||||||||| Sbjct: 14154119 gccatgatccaggccgtgatggtcatgagcacgcagggcaagccgcgcctcctcaagttc 14154178 Query: 92 taca 95 |||| Sbjct: 14154179 taca 14154182 Score = 67.9 bits (34), Expect = 6e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 148 gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207 ||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||| Sbjct: 14154492 gttgtctgcaaggccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggacc 14154551 Query: 208 gg 209 || Sbjct: 14154552 gg 14154553 Score = 67.9 bits (34), Expect = 6e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 473 gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 |||||||| |||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 14158342 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 14158399 Score = 44.1 bits (22), Expect = 0.85 Identities = 40/46 (86%) Strand = Plus / Plus Query: 101 caggacccggagaagcatcaggagctggtccgcagcgtcttccagt 146 |||| ||| |||||||||||||| || |||||| ||||||||||| Sbjct: 14154370 caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagt 14154415
>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1102E12 Length = 155692 Score = 137 bits (69), Expect = 8e-29 Identities = 81/85 (95%) Strand = Plus / Plus Query: 387 ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 97886 ttttggatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 97945 Query: 447 aatctgtagaagagattgcgaggtt 471 |||||||||||||||||| ||||| Sbjct: 97946 gatctgtagaagagattgcaaggtt 97970 Score = 97.6 bits (49), Expect = 7e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 304 agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363 ||||||||||||||||||| | || |||||||||||||| ||||||||| | |||||||| Sbjct: 97375 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttcacattgtatt 97434 Query: 364 taacttcaacaag 376 ||||||||||||| Sbjct: 97435 taacttcaacaag 97447 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 32 gccatgatccaggcggtgatggttatcagcactctgggcaagccccgcctcctcaagttc 91 |||||||||||||| |||||||| || ||||| | ||||||||| ||||||||||||||| Sbjct: 93833 gccatgatccaggccgtgatggtcatgagcacgcagggcaagccgcgcctcctcaagttc 93892 Query: 92 taca 95 |||| Sbjct: 93893 taca 93896 Score = 67.9 bits (34), Expect = 6e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 148 gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207 ||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||| Sbjct: 94206 gttgtctgcaaggccggacagtgtaagcaatttcgtcaaggttgatgcaatctttggacc 94265 Query: 208 gg 209 || Sbjct: 94266 gg 94267 Score = 67.9 bits (34), Expect = 6e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 473 gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 |||||||| |||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 98056 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 98113 Score = 44.1 bits (22), Expect = 0.85 Identities = 40/46 (86%) Strand = Plus / Plus Query: 101 caggacccggagaagcatcaggagctggtccgcagcgtcttccagt 146 |||| ||| |||||||||||||| || |||||| ||||||||||| Sbjct: 94084 caggcccccgagaagcatcaggaactcgtccgcgccgtcttccagt 94129
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 121 bits (61), Expect = 5e-24 Identities = 79/85 (92%) Strand = Plus / Minus Query: 387 ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 71084 ttttagatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 71025 Query: 447 aatctgtagaagagattgcgaggtt 471 |||||| ||||||||||| ||||| Sbjct: 71024 gatctgtcgaagagattgcaaggtt 71000 Score = 97.6 bits (49), Expect = 7e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 304 agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363 ||||||||||||||||||| | || |||||||||||||| ||||||||||| || ||||| Sbjct: 71580 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtatt 71521 Query: 364 taacttcaacaag 376 ||||||||||||| Sbjct: 71520 taacttcaacaag 71508 Score = 81.8 bits (41), Expect = 4e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 3 tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62 |||||||||| || |||||||| | | |||||||||||||| |||||||| || |||| Sbjct: 73017 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 72958 Query: 63 ctctgggcaagccccgcctcctcaagttctaca 95 | | ||||||||| ||||||||||||||||||| Sbjct: 72957 cgcagggcaagccgcgcctcctcaagttctaca 72925 Score = 67.9 bits (34), Expect = 6e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 473 gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 |||||||| |||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 70914 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 70857 Score = 67.9 bits (34), Expect = 6e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 148 gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207 ||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||| Sbjct: 72608 gttgtctgcaaggccggacagtgtcagcaatttcgtcaaggttgatgcaatctttggacc 72549 Query: 208 gg 209 || Sbjct: 72548 gg 72547 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 208 gggaacgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatag 267 |||| ||||| |||||||||| |||||||| ||| | ||||| | |||||||||||||| Sbjct: 72180 gggagcgaaattggtctacaaacatttggccacattgtactttgtttttgtctttgatag 72121 Query: 268 ctcggagaatgagcttgc 285 ||| || ||||| ||||| Sbjct: 72120 ctctgaaaatgaacttgc 72103 Score = 50.1 bits (25), Expect = 0.014 Identities = 34/37 (91%) Strand = Plus / Minus Query: 110 gagaagcatcaggagctggtccgcagcgtcttccagt 146 |||||||||||||| || |||||| |||||||||||| Sbjct: 72736 gagaagcatcaggacctcgtccgcggcgtcttccagt 72700
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 121 bits (61), Expect = 5e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 387 ttttggatgaaatgatactgggaggacaagtgattgaaacaagttcagagcaaataatga 446 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 6752874 ttttagatgaaatgatacttgggggacaagtgattgaaacaagttcagagcaaataatga 6752933 Query: 447 aatctgtagaagagattgcgaggtt 471 |||||| ||||||||||| ||||| Sbjct: 6752934 gatctgtcgaagagattgcaaggtt 6752958 Score = 97.6 bits (49), Expect = 7e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 304 agtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgatattgtatt 363 ||||||||||||||||||| | || |||||||||||||| ||||||||||| || ||||| Sbjct: 6752378 agtttttgttgaaacattggacagatgcttcaagaatgtgtgtgagcttgacatcgtatt 6752437 Query: 364 taacttcaacaag 376 ||||||||||||| Sbjct: 6752438 taacttcaacaag 6752450 Score = 81.8 bits (41), Expect = 4e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 3 tttcgctcgcgtcctcctcatcgtcggcggccatgatccaggcggtgatggttatcagca 62 |||||||||| || |||||||| | | |||||||||||||| |||||||| || |||| Sbjct: 6750941 tttcgctcgcctcttcctcatccccatcagccatgatccaggccgtgatggtgatgagca 6751000 Query: 63 ctctgggcaagccccgcctcctcaagttctaca 95 | | ||||||||| ||||||||||||||||||| Sbjct: 6751001 cgcagggcaagccgcgcctcctcaagttctaca 6751033 Score = 67.9 bits (34), Expect = 6e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 148 gttgtctgcgaggccggagggtgtgagcaatttcgtcgaggccgatgcaatctttggacc 207 ||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||| Sbjct: 6751350 gttgtctgcaaggccggacagtgtcagcaatttcgtcaaggttgatgcaatctttggacc 6751409 Query: 208 gg 209 || Sbjct: 6751410 gg 6751411 Score = 67.9 bits (34), Expect = 6e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 473 gagaaacaatcaagcacaactagcctcataccaaagtcgatatcggagcgtttcagcc 530 |||||||| |||| |||||| ||||||||||| |||||||| || ||||||||||||| Sbjct: 6753044 gagaaacagtcaaacacaaccagcctcataccgaagtcgatttcagagcgtttcagcc 6753101 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 208 gggaacgaaactggtctacaagcatttggcaacactatacttcatctttgtctttgatag 267 |||| ||||| |||||||||| |||||||| ||| | ||||| | |||||||||||||| Sbjct: 6751778 gggagcgaaattggtctacaaacatttggccacattgtactttgtttttgtctttgatag 6751837 Query: 268 ctcggagaatgagcttgc 285 ||| || ||||| ||||| Sbjct: 6751838 ctctgaaaatgaacttgc 6751855 Score = 50.1 bits (25), Expect = 0.014 Identities = 34/37 (91%) Strand = Plus / Plus Query: 110 gagaagcatcaggagctggtccgcagcgtcttccagt 146 |||||||||||||| || |||||| |||||||||||| Sbjct: 6751222 gagaagcatcaggacctcgtccgcggcgtcttccagt 6751258
>ref|XM_397320.3| PREDICTED: Apis mellifera similar to orange CG3029-PA, transcript variant 1 (LOC413881), mRNA Length = 1540 Score = 48.1 bits (24), Expect = 0.055 Identities = 48/56 (85%) Strand = Plus / Plus Query: 300 tacaagtttttgttgaaacattgaataggtgcttcaagaatgtatgtgagcttgat 355 ||||||||||||||||||||||| ||| || || | ||||||||||| |||||| Sbjct: 718 tacaagtttttgttgaaacattggataaatgttttgaaaatgtatgtgaacttgat 773
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 592 aattgggatcatatcttcagtg 613 |||||||||||||||||||||| Sbjct: 3729180 aattgggatcatatcttcagtg 3729159
>gb|BC071511.1| Danio rerio selenoprotein 15, mRNA (cDNA clone MGC:86882 IMAGE:6904388), complete cds Length = 971 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 368 ttcaacaagcttcacacagttt 389 |||||||||||||||||||||| Sbjct: 717 ttcaacaagcttcacacagttt 696
>ref|NM_114946.2| Arabidopsis thaliana unknown protein (AT3G50860) mRNA, complete cds Length = 1088 Score = 42.1 bits (21), Expect = 3.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319 ||||||||||| ||||| || ||| | |||||| ||||||||||| Sbjct: 590 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 634
>gb|BC073089.1| Xenopus laevis cDNA clone IMAGE:4755609, partial cds Length = 3956 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 cgttgtctgcgaggccggagg 167 ||||||||||||||||||||| Sbjct: 355 cgttgtctgcgaggccggagg 335
>ref|NM_178294.2| Danio rerio selenoprotein 15 (sep15), mRNA gb|AY221263.1| Danio rerio 15 kDa selenoprotein SeP15 mRNA, complete cds Length = 945 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 ttcaacaagcttcacacagtt 388 ||||||||||||||||||||| Sbjct: 706 ttcaacaagcttcacacagtt 686
>gb|AY096709.1| Arabidopsis thaliana putative clathrin coat assembly protein (At3g50860) mRNA, complete cds Length = 532 Score = 42.1 bits (21), Expect = 3.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319 ||||||||||| ||||| || ||| | |||||| ||||||||||| Sbjct: 241 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 285
>gb|AY065287.1| Arabidopsis thaliana putative clathrin coat assembly protein (At3g50860) mRNA, complete cds Length = 1104 Score = 42.1 bits (21), Expect = 3.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 275 aatgagcttgccatgctcgacctcgtacaagtttttgttgaaaca 319 ||||||||||| ||||| || ||| | |||||| ||||||||||| Sbjct: 590 aatgagcttgctatgcttgatctcattcaagttcttgttgaaaca 634
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 6 cgctcgcgtcctcctcatcgtcggcggcc 34 ||||| |||||||||| |||||||||||| Sbjct: 18195001 cgctctcgtcctcctcctcgtcggcggcc 18194973
>emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 on chromosome 22q12.1, complete sequence Length = 109859 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 aacttgagcaaaagaaatcaa 592 ||||||||||||||||||||| Sbjct: 105257 aacttgagcaaaagaaatcaa 105277
>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161735 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 acatgaaaacttattggctga 672 ||||||||||||||||||||| Sbjct: 4152 acatgaaaacttattggctga 4172
>gb|BC097626.1| Xenopus laevis cDNA clone IMAGE:5511302 Length = 3911 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 cgttgtctgcgaggccggagg 167 ||||||||||||||||||||| Sbjct: 331 cgttgtctgcgaggccggagg 311
>emb|AL591175.6| Zebrafish DNA sequence from clone BUSM1-37I06 in linkage group 8 Contains four novel genes for a protein similar to MHC class II alpha chain proteins, the novel retrotransposon SUSHIIDR1 similar to SUSHI-ICHI (Fugu rubripes), a putative novel gene, a novel gene for a protein similar to MHC class I heavy chain proteins and two novel genes for a protein similar toMHC class II beta chain, complete sequence Length = 89232 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 acacagttttggatgaaatga 401 ||||||||||||||||||||| Sbjct: 69438 acacagttttggatgaaatga 69418
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 6 cgctcgcgtcctcctcatcgtcggcggcc 34 ||||| |||||||||| |||||||||||| Sbjct: 43725 cgctctcgtcctcctcctcgtcggcggcc 43697
>emb|BX004880.9| Zebrafish DNA sequence from clone CH211-69B7 in linkage group 11, complete sequence Length = 194839 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 787 ggctctgtgaccatgtgcaaatgtt 811 |||||||||| |||||||||||||| Sbjct: 163001 ggctctgtgaacatgtgcaaatgtt 162977
>emb|BX005261.8| Zebrafish DNA sequence from clone DKEY-20I6 in linkage group 1, complete sequence Length = 228767 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 tacaagtttttgttgaaacat 320 ||||||||||||||||||||| Sbjct: 111486 tacaagtttttgttgaaacat 111506
>emb|AL591180.4| Zebrafish DNA sequence from clone BUSM1-243A08 in linkage group 8 Contains a novel and partly predicted gene for a protein similar to major histocompatibility complex class II DCB gene (mhc2dcb), MHC2DBC related sequence (mhc2dbc-rs), part of a novel gene for a protein similar to MHC class II alpha chain, the fzd10 gene for frizzled homologue 10 and a GpC island, complete sequence Length = 80272 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 acacagttttggatgaaatga 401 ||||||||||||||||||||| Sbjct: 15766 acacagttttggatgaaatga 15746 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 163,631,473 Number of extensions: 8658349 Number of successful extensions: 170377 Number of sequences better than 10.0: 25 Number of HSP's gapped: 170375 Number of HSP's successfully gapped: 48 Length of query: 894 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 871 Effective length of database: 18,503,978,556 Effective search space: 16116965322276 Effective search space used: 16116965322276 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)