ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os04g0446200:Os04g0446200 340 5e-94
2AK110405: 29 3.5
3AK070064:Os01g0939100 29 3.5
4AK062949:Os07g0127500 28 6.0

>Os04g0446200:Os04g0446200 |
          Length = 202
 Score =  340 bits (873), Expect = 5e-94
 Identities = 162/178 (91%), Positives = 171/178 (96%)
 Frame = +3

Query: 105 PTMLDELYHINVVPAELHFKFRKELQGLRVGLNFEFYNLEVNDFEAKVVVKPLDFDRKWK 284
           PT LDELY INVVPAELHFKFRKELQGLRVGLNFEFYNLEVNDFEAKVV+KPLD++RKWK
Sbjct: 25  PTTLDELYKINVVPAELHFKFRKELQGLRVGLNFEFYNLEVNDFEAKVVLKPLDYERKWK 84

Query: 285 FQYKPISGDIQLLSKKIPVTKYLNLQVGIGHNFQLKATGWKWKLTTCLGGDGVSHIRNKS 464
           F YKPISGDIQLLSKKIPVTK+LNLQVGIGHNF L ATGWKWKL+TCLGGDGVS IRNKS
Sbjct: 85  FHYKPISGDIQLLSKKIPVTKFLNLQVGIGHNFHLNATGWKWKLSTCLGGDGVSQIRNKS 144

Query: 465 KLNLFPGFDLRLGWKAEYVLPEIHGAVGTGEPAFSMNYGRLQASIDRVEAIVTQSDRY 638
            L++FPGFDLR+GW+AEYVLPEIHGAVGTGEPAFSMNYGRLQASIDRVEAIVTQSDRY
Sbjct: 145 TLSMFPGFDLRVGWRAEYVLPEIHGAVGTGEPAFSMNYGRLQASIDRVEAIVTQSDRY 202



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>AK110405: |
          Length = 1006

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 736 ASKQPLDFTEIVAVEGLLRFVT 671
           A ++PLDFT I   EG+ RF T
Sbjct: 583 ADREPLDFTSIAIAEGVARFPT 604



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>AK070064:Os01g0939100 |
          Length = 1043

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 625 NQIGTEPPRMTWMLLWSRSEGVLQLQLS 708
           NQ   +PPR  WM LW  S+ +  L L+
Sbjct: 156 NQYTEKPPRTFWMFLWDASQDMTLLLLA 183



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>AK062949:Os07g0127500 |
          Length = 172

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 PSGRHWSQFPTEGDWMEVEAHYLLGGRWC 442
           P+G+ WS     G WME +A Y+     C
Sbjct: 92  PAGKAWSAADAVGLWMEEKASYVYSSNTC 120


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 23,057,830
Number of extensions: 539666
Number of successful extensions: 1282
Number of sequences better than 10.0: 4
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 4
Length of query: 278
Length of database: 15,399,855
Length adjustment: 99
Effective length of query: 179
Effective length of database: 11,435,796
Effective search space: 2047007484
Effective search space used: 2047007484
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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