ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q92HA7:UVRC_RICCN UvrABC system protein C - Rickettsia conorii 31 5.2
2O35381:AN32A_MOUSE Acidic leucine-rich nuclear phosphoprotein 32... 31 6.9
3P50388:BGAL_SULSH Beta-galactosidase - Sulfolobus shibatae 30 8.9

>Q92HA7:UVRC_RICCN UvrABC system protein C - Rickettsia conorii|
          Length = 639
 Score = 31.2 bits (69), Expect = 5.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +3

Query: 288 QYKPISGDIQLLSKKIPVTKYLNLQVGIGHNFQLK----ATGWKWKLTTCLGGDGVSHIR 455
           Q+  I  ++  L K +PV KYL +     HNF +K          K++     +GV   R
Sbjct: 536 QFHVIGKEVFTLDKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETR 595

Query: 456 NKSKLNLFPGF 488
            K+ L+ F  +
Sbjct: 596 KKALLHYFGSY 606



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>O35381:AN32A_MOUSE Acidic leucine-rich nuclear phosphoprotein 32 family member A - Mus|
           musculus (Mouse)
          Length = 247

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = +3

Query: 171 KELQGLRVGLNFEFYNLE----VNDFEAKVVVKP-LDFDRKWKFQYKPISGDIQLLSKKI 335
           K ++G   GL  EF  LE    +N     +   P L+  +K +     ISGD+++L++K 
Sbjct: 28  KSIEGKIEGLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENRISGDLEVLAEKC 87

Query: 336 PVTKYLNL 359
           P  K+LNL
Sbjct: 88  PNLKHLNL 95



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>P50388:BGAL_SULSH Beta-galactosidase - Sulfolobus shibatae|
          Length = 489

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = +3

Query: 201 NFEFYNLEVNDFEAKVVVKPLDFDRKWKFQYKPISGDIQLLSKKIPVTKYLNLQVGIGHN 380
           N  F  L   D EA   V+  ++D +W F    I G+I   S+K+           IG N
Sbjct: 264 NSSFQPLTEKDVEA---VEMAEYDNRWAFFDAIIRGEIMRGSEKVVRDDLRGRLDWIGVN 320

Query: 381 FQLKATGWKW-KLTTCLGGDGVSHIRNKSKLNLFPGFDLRLGWK 509
           +  +    K  K  T LGG G    RN   L   P  D   GW+
Sbjct: 321 YYTRTVVKKTEKGYTSLGGYGHGCERNSVSLAGLPTSD--FGWE 362


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 142,289,861
Number of extensions: 3241076
Number of successful extensions: 6994
Number of sequences better than 10.0: 3
Number of HSP's gapped: 6992
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 166
Effective length of database: 69,965,399
Effective search space: 11614256234
Effective search space used: 11614256234
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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