>gb|AY986485.1| Zea mays NBS-LRR type disease resistance protein (MRPR1) mRNA,
           complete cds
          Length = 3256
 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 937 ggcatgggtggagtcggaaagactacccttgtaactcatgtttac 981
           |||||||||||  ||||||||||||||||||||||  ||||||||
Sbjct: 832 ggcatgggtgggctcggaaagactacccttgtaacaaatgtttac 876

>ref|NM_001049821.1| Oryza sativa (japonica cultivar-group) Os01g0547000 (Os01g0547000)
            mRNA, complete cds
          Length = 4930

 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 1350 ttcatgggatttgttctgcaaagaagcattttggaa 1385
            ||||||| | ||||||||||||||||||||||||||
Sbjct: 1315 ttcatggcagttgttctgcaaagaagcattttggaa 1350

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 1350     ttcatgggatttgttctgcaaagaagcattttggaa 1385
                ||||||| | ||||||||||||||||||||||||||
Sbjct: 20326217 ttcatggcagttgttctgcaaagaagcattttggaa 20326252



 Score = 48.1 bits (24), Expect = 0.21
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 1720     agaagtgaaacaagaacagaggaa 1743
                ||||||||||||||||||||||||
Sbjct: 17972212 agaagtgaaacaagaacagaggaa 17972189

>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0026J14
          Length = 163496

 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 1350  ttcatgggatttgttctgcaaagaagcattttggaa 1385
             ||||||| | ||||||||||||||||||||||||||
Sbjct: 92250 ttcatggcagttgttctgcaaagaagcattttggaa 92285

>dbj|AK121218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D06, full
            insert sequence
          Length = 4933

 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 1350 ttcatgggatttgttctgcaaagaagcattttggaa 1385
            ||||||| | ||||||||||||||||||||||||||
Sbjct: 1318 ttcatggcagttgttctgcaaagaagcattttggaa 1353

>ref|NM_001049704.1| Oryza sativa (japonica cultivar-group) Os01g0511000 (Os01g0511000)
            mRNA, complete cds
          Length = 1415

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1720 agaagtgaaacaagaacagaggaa 1743
            ||||||||||||||||||||||||
Sbjct: 1178 agaagtgaaacaagaacagaggaa 1201

>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 1720  agaagtgaaacaagaacagaggaa 1743
             ||||||||||||||||||||||||
Sbjct: 92047 agaagtgaaacaagaacagaggaa 92024

>dbj|AK071246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C07, full
            insert sequence
          Length = 1416

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1720 agaagtgaaacaagaacagaggaa 1743
            ||||||||||||||||||||||||
Sbjct: 1179 agaagtgaaacaagaacagaggaa 1202

>gb|AF032695.1|AF032695 Oryza sativa NBS-LRR type resistance protein (r8) gene, partial cds
          Length = 531

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 1348 cattcatgggatttgttctgcaaagaagcattttggaaaa 1387
            ||||||||||| || |||||||| |||||||| |||||||
Sbjct: 409  cattcatgggaattattctgcaaggaagcattctggaaaa 448

>gb|AC008602.8| Homo sapiens chromosome 5 clone CTB-107J24, complete sequence
          Length = 106301

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1092 caatgtgactctatctgaagaca 1114
            |||||||||||||||||||||||
Sbjct: 5879 caatgtgactctatctgaagaca 5901

>gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 170331

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 2180 ttcctaaagaaataaaaagattacaaa 2206
            |||||||||||||| ||||||||||||
Sbjct: 2449 ttcctaaagaaatagaaagattacaaa 2423

>gb|AC079948.21| Homo sapiens 12 BAC RP11-316O1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175306

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 2180   ttcctaaagaaataaaaagattacaaa 2206
              |||||||||||||| ||||||||||||
Sbjct: 104340 ttcctaaagaaatagaaagattacaaa 104314

>gb|AC093876.3| Homo sapiens BAC clone RP11-631I21 from 4, complete sequence
          Length = 183972

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 1219  tttgaaatccgtgatgcatttgc 1241
             |||||||||||||||||||||||
Sbjct: 32388 tttgaaatccgtgatgcatttgc 32410

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 921      ggtgatctctgtgtggggcatgggtgg 947
                |||||||||||||||||| ||||||||
Sbjct: 35131102 ggtgatctctgtgtggggaatgggtgg 35131076

>gb|AC010431.7|AC010431 Homo sapiens chromosome 5 clone CTD-2201G3, complete sequence
          Length = 126750

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1092  caatgtgactctatctgaagaca 1114
             |||||||||||||||||||||||
Sbjct: 83241 caatgtgactctatctgaagaca 83219

>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 921   ggtgatctctgtgtggggcatgggtgg 947
             |||||||||||||||||| ||||||||
Sbjct: 26458 ggtgatctctgtgtggggaatgggtgg 26432

>gb|AC008476.5|AC008476 Homo sapiens chromosome 5 clone CTC-380F16, complete sequence
          Length = 71549

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1092  caatgtgactctatctgaagaca 1114
             |||||||||||||||||||||||
Sbjct: 41941 caatgtgactctatctgaagaca 41919

>dbj|AB013449.2| Oryza sativa (japonica cultivar-group) mRNA for Pib, complete cds
          Length = 4288

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 921  ggtgatctctgtgtggggcatgggtgg 947
            |||||||||||||||||| ||||||||
Sbjct: 1584 ggtgatctctgtgtggggaatgggtgg 1610

>dbj|AB013448.1| Oryza sativa (japonica cultivar-group) gene for Pib, complete cds
          Length = 10322

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 921  ggtgatctctgtgtggggcatgggtgg 947
            |||||||||||||||||| ||||||||
Sbjct: 6190 ggtgatctctgtgtggggaatgggtgg 6216

>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020,
             complete sequence
          Length = 80920

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 937   ggcatgggtggagtcggaaagac 959
             |||||||||||||||||||||||
Sbjct: 73761 ggcatgggtggagtcggaaagac 73739

>dbj|AB013450.1| Oryza sativa (japonica cultivar-group) DNA, similar sequence to Pib
            gene
          Length = 9827

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 921  ggtgatctctgtgtggggcatgggtgg 947
            |||||||||||||||||| ||||||||
Sbjct: 6689 ggtgatctctgtgtggggaatgggtgg 6715

>dbj|AB026839.1| Oryza sativa gene for Pi-b protein, complete cds
          Length = 7295

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 921  ggtgatctctgtgtggggcatgggtgg 947
            |||||||||||||||||| ||||||||
Sbjct: 3793 ggtgatctctgtgtggggaatgggtgg 3819

>dbj|AK239967.1| Sus scrofa mRNA, clone:UTR010016F03, expressed in uterus
          Length = 1704

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 781 gtacaacaacctcaagcacaag 802
           ||||||||||||||||||||||
Sbjct: 896 gtacaacaacctcaagcacaag 917

>gb|CP000436.1| Haemophilus somnus 129PT, complete genome
          Length = 2007700

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 2176   gtacttcctaaagaaataaaaa 2197
              ||||||||||||||||||||||
Sbjct: 596850 gtacttcctaaagaaataaaaa 596829

>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1870   aaatcaaaagaggagatgtttt 1891
              ||||||||||||||||||||||
Sbjct: 829888 aaatcaaaagaggagatgtttt 829867

>gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, complete sequence
          Length = 218248

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1729   acaagaacagaggaagaaatcgctga 1754
              ||||| ||||||||||||||||||||
Sbjct: 134539 acaagcacagaggaagaaatcgctga 134564

>gb|AC100209.13| Mus musculus chromosome 13, clone RP23-59L9, complete sequence
          Length = 215769

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1739   aggaagaaatcgctgaggatta 1760
              ||||||||||||||||||||||
Sbjct: 186106 aggaagaaatcgctgaggatta 186085

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 1352     catgggatttgttctgcaaagaagcattttggaa 1385
                |||||||||||||||| ||||| ||||| |||||
Sbjct: 17367407 catgggatttgttctgtaaagaggcattctggaa 17367440

>emb|AL512290.11| Human DNA sequence from clone RP13-143G15 on chromosome 6 Contains a
             cytochrome c oxidase subunit Vb (COX5B) pseudogene, a
             novel gene and part of a novel gene, complete sequence
          Length = 133918

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 3066  ggtttatgttggtttttcagga 3087
             ||||||||||||||||||||||
Sbjct: 22207 ggtttatgttggtttttcagga 22228

>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete
            sequence
          Length = 203908

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1739 aggaagaaatcgctgaggatta 1760
            ||||||||||||||||||||||
Sbjct: 3327 aggaagaaatcgctgaggatta 3306

>gb|AF516634.1| Malus prunifolia putative disease resistance gene analog NBS-LRR
           (RGA-I21) gene, partial cds
          Length = 512

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 941 tgggtggagtcggaaagactac 962
           ||||||||||||||||||||||
Sbjct: 1   tgggtggagtcggaaagactac 22

>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5
          Length = 349082

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 2166  tgaaattgatgtacttcctaaagaaataaaaagattac 2203
             |||||||||| ||||| || |||||||||||| |||||
Sbjct: 43874 tgaaattgatttactttctgaagaaataaaaaaattac 43837

>gb|AC079235.7| Homo sapiens BAC clone RP11-495O23 from 2, complete sequence
          Length = 212237

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 546    aatggtaacatttgttaggaag 567
              ||||||||||||||||||||||
Sbjct: 174251 aatggtaacatttgttaggaag 174230

>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H06
          Length = 142832

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 1352   catgggatttgttctgcaaagaagcattttggaa 1385
              |||||||||||||||| ||||| ||||| |||||
Sbjct: 104000 catgggatttgttctgtaaagaggcattctggaa 104033

>gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, complete sequence
          Length = 225977

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 465   gatggaggagatcagggatgagctgg 490
             |||||||||||||||||| |||||||
Sbjct: 27059 gatggaggagatcagggaggagctgg 27084

>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1870   aaatcaaaagaggagatgtttt 1891
              ||||||||||||||||||||||
Sbjct: 822901 aaatcaaaagaggagatgtttt 822880

>gb|AF087521.1|AF087521 Triticum aestivum resistance protein (RGA4) gene, partial cds
          Length = 525

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 1352 catgggatttgttctgcaaagaagcattttggaa 1385
            |||||||| ||||||| ||||| |||||||||||
Sbjct: 407  catgggatctgttctgtaaagaggcattttggaa 440


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 636,850,179
Number of extensions: 34845175
Number of successful extensions: 178597
Number of sequences better than 10.0: 37
Number of HSP's gapped: 178597
Number of HSP's successfully gapped: 38
Length of query: 3365
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3341
Effective length of database: 18,499,340,271
Effective search space: 61806295845411
Effective search space used: 61806295845411
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)