ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.012
2dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.012
3emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in ... 48 0.046
4gb|AY956817.1| Euprymna scolopes IkappaB kinase gamma mRNA, comp... 46 0.18
5gb|AE001390.2| Plasmodium falciparum 3D7 chromosome 2 section 27... 46 0.18
6gb|AF242738.3| Bacteriophage phi LC3, complete genome 44 0.72
7gb|M77843.1|PEACHSAR Pisum sativum chromosomal scaffold-associat... 44 0.72
8gb|DQ245191.1| Zea mays clone 13658 mRNA sequence 42 2.8
9gb|DQ245190.1| Zea mays clone 13653 mRNA sequence 42 2.8
10emb|CT829867.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 2.8
11ref|NM_001052288.1| Oryza sativa (japonica cultivar-group) Os02g... 42 2.8
12gb|CP000312.1| Clostridium perfringens SM101, complete genome 42 2.8
13gb|CP000246.1| Clostridium perfringens ATCC 13124, complete genome 42 2.8
14gb|AC188053.1| Callithrix jacchus chromosome UNK clone CH259-25H... 42 2.8
15gb|DQ141103.1| Bombyx mori Dscam gene, partial sequence 42 2.8
16gb|AC138330.4| Mus musculus BAC clone RP23-19L20 from chromosome... 42 2.8
17gb|BT012979.1| Lycopersicon esculentum clone 114191R, mRNA sequence 42 2.8
18gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome... 42 2.8
19gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosom... 42 2.8
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
21emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o... 42 2.8
22emb|AL162590.15| Human DNA sequence from clone RP11-54K16 on chr... 42 2.8
23gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 42 2.8
24emb|AL646044.13| Mouse DNA sequence from clone RP23-269O5 on chr... 42 2.8
25gb|AC087076.1|AC087076 Caenorhabditis briggsae cosmid CB032N22, ... 42 2.8
26dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 42 2.8
27dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
28dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
29gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosom... 42 2.8
30dbj|AK063220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.8
31emb|AL929109.5| Zebrafish DNA sequence from clone CH211-134D6, c... 42 2.8
32dbj|AP002364.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.8
33gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence 42 2.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743
 Score = 50.1 bits (25), Expect = 0.012
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                           
Query: 95      accggacaagtttatgatcgacattttaagaataaggatacccgcacctttgaagaattt 154
               |||||||||||||||||||   |||| ||| | ||| | |||  || ||||||||  |||
Sbjct: 1397996 accggacaagtttatgatcagtatttcaaggacaagaaaaccgacagctttgaagctttt 1398055

                                            
Query: 155     catcttgcatatgttgaattctgcaagta 183
               ||| |||| |||||||| |||||||||||
Sbjct: 1398056 catgttgcctatgttgagttctgcaagta 1398084



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 344     gacaacctcttcatcatggccggcctggc 372
               |||| |||||||||||||||||| |||||
Sbjct: 1398597 gacagcctcttcatcatggccgggctggc 1398625



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                           
Query: 450     tccccaacgttgtctttgtgccgctgtgcacgctggttgccatcatgggtgccactgcag 509
               ||||||||||  |||| || ||||| | ||| || | |||||||||||| || |||||||
Sbjct: 1398697 tccccaacgtcctcttcgtcccgctcttcactctcgctgccatcatgggagcaactgcag 1398756

                        
Query: 510     ttcagatga 518
               | |||||||
Sbjct: 1398757 tccagatga 1398765
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>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0482F12
          Length = 147735

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                         
Query: 95    accggacaagtttatgatcgacattttaagaataaggatacccgcacctttgaagaattt 154
             |||||||||||||||||||   |||| ||| | ||| | |||  || ||||||||  |||
Sbjct: 79268 accggacaagtttatgatcagtatttcaaggacaagaaaaccgacagctttgaagctttt 79327

                                          
Query: 155   catcttgcatatgttgaattctgcaagta 183
             ||| |||| |||||||| |||||||||||
Sbjct: 79328 catgttgcctatgttgagttctgcaagta 79356



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 344   gacaacctcttcatcatggccggcctggc 372
             |||| |||||||||||||||||| |||||
Sbjct: 79869 gacagcctcttcatcatggccgggctggc 79897



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                         
Query: 450   tccccaacgttgtctttgtgccgctgtgcacgctggttgccatcatgggtgccactgcag 509
             ||||||||||  |||| || ||||| | ||| || | |||||||||||| || |||||||
Sbjct: 79969 tccccaacgtcctcttcgtcccgctcttcactctcgctgccatcatgggagcaactgcag 80028

                      
Query: 510   ttcagatga 518
             | |||||||
Sbjct: 80029 tccagatga 80037
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>emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in linkage group 16,
             complete sequence
          Length = 218036

 Score = 48.1 bits (24), Expect = 0.046
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 688   ttcaaatagttgatgaaaagaaag 711
             ||||||||||||||||||||||||
Sbjct: 60435 ttcaaatagttgatgaaaagaaag 60458
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>gb|AY956817.1| Euprymna scolopes IkappaB kinase gamma mRNA, complete cds
          Length = 2338

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 150  aatttcatcttgcatatgttgaattct 176
            ||||||||||||||||| |||||||||
Sbjct: 1241 aatttcatcttgcatattttgaattct 1215
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>gb|AE001390.2| Plasmodium falciparum 3D7 chromosome 2 section 27 of 73 of the complete
             sequence
          Length = 15959

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 618   catccaaaaatgattgtataaaattat 644
             |||||||||||||||||||||| ||||
Sbjct: 12305 catccaaaaatgattgtataaacttat 12331
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>gb|AF242738.3| Bacteriophage phi LC3, complete genome
          Length = 32172

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 704   aaagaaagcagatgttgaaaaa 725
             ||||||||||||||||||||||
Sbjct: 16627 aaagaaagcagatgttgaaaaa 16648
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>gb|M77843.1|PEACHSAR Pisum sativum chromosomal scaffold-associated region
          Length = 1380

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 518 agcaagaagagcaaagacaaca 539
           ||||||||||||||||||||||
Sbjct: 328 agcaagaagagcaaagacaaca 307
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>gb|DQ245191.1| Zea mays clone 13658 mRNA sequence
          Length = 623

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 355 catcatggccggcctggctgc 375
           |||||||||||||||||||||
Sbjct: 46  catcatggccggcctggctgc 66
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>gb|DQ245190.1| Zea mays clone 13653 mRNA sequence
          Length = 623

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 355 catcatggccggcctggctgc 375
           |||||||||||||||||||||
Sbjct: 46  catcatggccggcctggctgc 66
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>emb|CT829867.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA039L21, full
           insert sequence
          Length = 729

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 344 gacaacctcttcatcatggccggcctggc 372
           |||| |||||||||||||||||| |||||
Sbjct: 340 gacagcctcttcatcatggccgggctggc 368



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 450 tccccaacgttgtctttgtgccgctgtgcacgctggttgccatcatgggtgccactgcag 509
           ||||||||||  |||| || ||||| | ||| || | |||||||||||| || |||||||
Sbjct: 440 tccccaacgtcctcttcgtcccgctcttcactctcgctgccatcatgggagcaactgcag 499

                    
Query: 510 ttcagatga 518
           | |||||||
Sbjct: 500 tccagatga 508
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>ref|NM_001052288.1| Oryza sativa (japonica cultivar-group) Os02g0126600 (Os02g0126600)
           mRNA, complete cds
          Length = 718

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 344 gacaacctcttcatcatggccggcctggc 372
           |||| |||||||||||||||||| |||||
Sbjct: 332 gacagcctcttcatcatggccgggctggc 360



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 450 tccccaacgttgtctttgtgccgctgtgcacgctggttgccatcatgggtgccactgcag 509
           ||||||||||  |||| || ||||| | ||| || | |||||||||||| || |||||||
Sbjct: 432 tccccaacgtcctcttcgtcccgctcttcactctcgctgccatcatgggagcaactgcag 491

                    
Query: 510 ttcagatga 518
           | |||||||
Sbjct: 492 tccagatga 500
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>gb|CP000312.1| Clostridium perfringens SM101, complete genome
          Length = 2897393

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 708    aaagcagatgttgaaaaaata 728
              |||||||||||||||||||||
Sbjct: 623119 aaagcagatgttgaaaaaata 623139
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>gb|CP000246.1| Clostridium perfringens ATCC 13124, complete genome
          Length = 3256683

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 708    aaagcagatgttgaaaaaata 728
              |||||||||||||||||||||
Sbjct: 643579 aaagcagatgttgaaaaaata 643599
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>gb|AC188053.1| Callithrix jacchus chromosome UNK clone CH259-25H12, complete sequence
          Length = 87060

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 510   ttcagatgagcaagaagagca 530
             |||||||||||||||||||||
Sbjct: 73420 ttcagatgagcaagaagagca 73440
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>gb|DQ141103.1| Bombyx mori Dscam gene, partial sequence
          Length = 57601

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 622   caaaaatgattgtataaaatt 642
             |||||||||||||||||||||
Sbjct: 34837 caaaaatgattgtataaaatt 34817
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>gb|AC138330.4| Mus musculus BAC clone RP23-19L20 from chromosome 13, complete
            sequence
          Length = 190901

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 525  agagcaaagacaacaagacct 545
            |||||||||||||||||||||
Sbjct: 1338 agagcaaagacaacaagacct 1318
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>gb|BT012979.1| Lycopersicon esculentum clone 114191R, mRNA sequence
          Length = 1002

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 690 caaatagttgatgaaaagaaa 710
           |||||||||||||||||||||
Sbjct: 863 caaatagttgatgaaaagaaa 843
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>gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome 13, complete sequence
          Length = 184155

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 525    agagcaaagacaacaagacct 545
              |||||||||||||||||||||
Sbjct: 153436 agagcaaagacaacaagacct 153416
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>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete
             sequence
          Length = 142347

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 678   ccttttattgttcaaatagtt 698
             |||||||||||||||||||||
Sbjct: 79417 ccttttattgttcaaatagtt 79437
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 664      gttgaatatatgttcctttta 684
                |||||||||||||||||||||
Sbjct: 25985183 gttgaatatatgttcctttta 25985163
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>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 517   gagcaagaagagcaaagacaa 537
             |||||||||||||||||||||
Sbjct: 37773 gagcaagaagagcaaagacaa 37753
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>emb|AL162590.15| Human DNA sequence from clone RP11-54K16 on chromosome 9p13.3-21.1
             Contains a cancer/testis antigen 1 (CTAG1) (LAGE2B)
             pseudogene, the DNAJA1 gene for DnaJ (Hsp40) homolog,
             subfamily A, member 1, the gene for homolog of C. elegans
             smu-1 (SMU-1) (FLJ10805), the 5' end of the  APTX gene for
             aprataxin and 3 CpG islands, complete sequence
          Length = 98271

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 706   agaaagcagatgttgaaaaaatacc 730
             ||||||||||||||||| |||||||
Sbjct: 54649 agaaagcagatgttgaataaatacc 54673
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 717     gttgaaaaaatacctgatata 737
               |||||||||||||||||||||
Sbjct: 1120975 gttgaaaaaatacctgatata 1120995
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>emb|AL646044.13| Mouse DNA sequence from clone RP23-269O5 on chromosome 11, complete
             sequence
          Length = 197473

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 25    ttgcttgcatctataatgggtcttccctt 53
             ||||| |||||| ||||||||||||||||
Sbjct: 46932 ttgctcgcatctgtaatgggtcttccctt 46960
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>gb|AC087076.1|AC087076 Caenorhabditis briggsae cosmid CB032N22, complete sequence
          Length = 83495

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 272   caaaaagacgatgaaaagaagaaga 296
             |||||||| ||||||||||||||||
Sbjct: 17191 caaaaagatgatgaaaagaagaaga 17167
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 708    aaagcagatgttgaaaaaata 728
              |||||||||||||||||||||
Sbjct: 696208 aaagcagatgttgaaaaaata 696228
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>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 664   gttgaatatatgttcctttta 684
             |||||||||||||||||||||
Sbjct: 23041 gttgaatatatgttcctttta 23021
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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017B12
          Length = 157424

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 664    gttgaatatatgttcctttta 684
              |||||||||||||||||||||
Sbjct: 140281 gttgaatatatgttcctttta 140261
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>gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosome 16, complete
             sequence
          Length = 202496

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 525   agagcaaagacaacaagacct 545
             |||||||||||||||||||||
Sbjct: 87392 agagcaaagacaacaagacct 87372
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>dbj|AK063220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E04, full
           insert sequence
          Length = 719

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 344 gacaacctcttcatcatggccggcctggc 372
           |||| |||||||||||||||||| |||||
Sbjct: 333 gacagcctcttcatcatggccgggctggc 361



 Score = 42.1 bits (21), Expect = 2.8
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 450 tccccaacgttgtctttgtgccgctgtgcacgctggttgccatcatgggtgccactgcag 509
           ||||||||||  |||| || ||||| | ||| || | |||||||||||| || |||||||
Sbjct: 433 tccccaacgtcctcttcgtcccgctcttcactctcgctgccatcatgggagcaactgcag 492

                    
Query: 510 ttcagatga 518
           | |||||||
Sbjct: 493 tccagatga 501
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>emb|AL929109.5| Zebrafish DNA sequence from clone CH211-134D6, complete sequence
          Length = 197991

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 617   tcatccaaaaatgattgtata 637
             |||||||||||||||||||||
Sbjct: 73662 tcatccaaaaatgattgtata 73682
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>dbj|AP002364.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-121L10, complete
             sequence
          Length = 165703

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 624   aaaatgattgtataaaattat 644
             |||||||||||||||||||||
Sbjct: 60490 aaaatgattgtataaaattat 60510
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>gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence
          Length = 107859

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 517   gagcaagaagagcaaagacaacaag 541
             ||||||||||||| |||||||||||
Sbjct: 14843 gagcaagaagagccaagacaacaag 14819


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 163,216,325
Number of extensions: 9393552
Number of successful extensions: 202994
Number of sequences better than 10.0: 33
Number of HSP's gapped: 202994
Number of HSP's successfully gapped: 40
Length of query: 754
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 732
Effective length of database: 18,508,616,841
Effective search space: 13548307527612
Effective search space used: 13548307527612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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