ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf78o13 |
|---|---|
| Clone Library Name | barley_pub |
>Q02817:MUC2_HUMAN Mucin-2 precursor - Homo sapiens (Human)| Length = 5179 Score = 36.2 bits (82), Expect = 0.20 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Frame = +1 Query: 157 SSSQEIPDTHISKCXXXXXXXXXXXXXHVAPVASIST--PL-KTCSLLSTLPFSQRATSS 327 + +Q P TH S P S ST PL ++ +LLSTLP + TS+ Sbjct: 4191 TGTQTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTST 4250 Query: 328 LPPSTTSKRTT--GAYLLPLPPALSRS 402 PPST + TT G + L PP+ + S Sbjct: 4251 APPSTPTAPTTTSGGHTLSPPPSTTTS 4277
>Q9UPW0:FOXJ3_HUMAN Forkhead box protein J3 - Homo sapiens (Human)| Length = 622 Score = 36.2 bits (82), Expect = 0.20 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Frame = +2 Query: 26 HSNSERKNINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAFH 205 HSN + + S LN T + VA P PS P H+ + +P H Sbjct: 343 HSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHP----QPSPHPPHRPHGLPQ-----H 393 Query: 206 SDRLPSPHPGPTWHPWPQSRH--HSRPVRFSQRYPSVKEQ 319 R P P P P H QS H H P + Q +P+ + Q Sbjct: 394 PQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQ 433
>O10341:Y091_NPVOP Hypothetical 29.3 kDa protein - Orgyia pseudotsugata multicapsid| polyhedrosis virus (OpMNPV) Length = 279 Score = 35.0 bits (79), Expect = 0.45 Identities = 34/119 (28%), Positives = 40/119 (33%) Frame = +2 Query: 35 SERKNINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAFHSDR 214 S ++NI T+ L P+ T S T PT S P P+ TP P A Sbjct: 23 SLKQNIETKPPL-PSPTPTPTPSPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTP 81 Query: 215 LPSPHPGPTWHPWPQSRHHSRPVRFSQRYPSVKEQPAXXXXXXXXXXXXXXTCSPSPQP 391 PSP PT P P P PS P T SP+P P Sbjct: 82 TPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPT-------------PTPSPTPSP 127 Score = 32.0 bits (71), Expect = 3.8 Identities = 29/109 (26%), Positives = 36/109 (33%) Frame = +2 Query: 65 SLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAFHSDRLPSPHPGPTW 244 +L+PT + S T PT S P P+ +P P PSP P PT Sbjct: 86 TLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPTPSPTPSPTP 145 Query: 245 HPWPQSRHHSRPVRFSQRYPSVKEQPAXXXXXXXXXXXXXXTCSPSPQP 391 P P P PS P+ T SP+P P Sbjct: 146 SPTPTPSPTPSPTPTPSPTPSPTPTPS-------------PTPSPTPPP 181
>P49386:RT03_BRANA Mitochondrial ribosomal protein S3 - Brassica napus (Rape)| Length = 555 Score = 33.9 bits (76), Expect = 1.0 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Frame = -3 Query: 543 VAQDPKSQIKRKKRLSQCVMSKRGRELKERRE-FRVSFNGEMKQASD 406 +AQD Q+K K+R + + +K +E+ +R E R+ F+G +K A++ Sbjct: 451 IAQDISFQLKNKRRSTHSIFAKIVKEIPKRVEGIRICFSGRLKDAAE 497
>Q5TM20:TNFB_MACMU Lymphotoxin-alpha precursor - Macaca mulatta (Rhesus macaque)| Length = 205 Score = 33.5 bits (75), Expect = 1.3 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = +2 Query: 47 NINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIY--QNAFHSDRLP 220 +++ S L PTS S F K+ PK P TPL+ +++ ++ Q FH L Sbjct: 93 SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKATP--TPLYLAHEVQLFSSQYPFHVPLLS 150 Query: 221 SP---HPGPTWHPWPQSRHHSRPVRFSQ 295 S +PG PW S +H + +Q Sbjct: 151 SQKMVYPG-LQEPWLHSMYHGAAFQLTQ 177
>Q14155:ARHG7_HUMAN Rho guanine nucleotide exchange factor 7 - Homo sapiens (Human)| Length = 803 Score = 33.5 bits (75), Expect = 1.3 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 134 PKTVPSSTPLHKRYQIPIYQNAFHSDRLPSPHPGPTWHPWPQSRHHSRP 280 P P S P H P+ ++ H+D P+P P +H P HH P Sbjct: 585 PTIKPHSVPSHTLPSHPVTPSSKHADSKPAPLT-PAYHTLPHPSHHGTP 632
>P22807:SLOU_DROME Homeobox protein slou - Drosophila melanogaster (Fruit fly)| Length = 659 Score = 32.7 bits (73), Expect = 2.3 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +2 Query: 164 HKRYQIPIYQNAFHSDRLPSPHPGPTWHPWPQSRHHSR-PVRFSQRYPSVKEQP 322 H+ +Q P + HS + P PHP P HP P + H R P S PS P Sbjct: 207 HQHHQHPAHP---HSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSP 257
>Q8JZM8:MUC4_MOUSE Mucin-4 precursor - Mus musculus (Mouse)| Length = 3443 Score = 32.3 bits (72), Expect = 2.9 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%) Frame = +1 Query: 250 VASISTPLKTCSLLSTLPFSQR----ATSSLPPSTTSKRTT 360 ++++STP+ + +LSTLP SQ TSS P +TTS T Sbjct: 551 MSTVSTPITSTQILSTLPQSQHTGSMGTSSNPQTTTSPVVT 591 Score = 31.2 bits (69), Expect = 6.6 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%) Frame = +1 Query: 250 VASISTPLKTCSLLSTLPFSQ----RATSSLPPSTTSKRTT 360 ++++STP+ + LSTLP SQ + TSS P +TT+ T Sbjct: 1746 MSTVSTPITSTHKLSTLPQSQHTGSKGTSSNPQTTTTPEVT 1786 Score = 31.2 bits (69), Expect = 6.6 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%) Frame = +1 Query: 250 VASISTPLKTCSLLSTLPFSQR----ATSSLPPSTTSKRTT 360 ++++STP+ + LSTLP SQ TSS P +TT+ T Sbjct: 1870 ISTVSTPMTSTHKLSTLPQSQHTGSMGTSSNPQTTTTPEVT 1910
>Q9NZP6:CO002_HUMAN Protein C15orf2 - Homo sapiens (Human)| Length = 1156 Score = 32.0 bits (71), Expect = 3.8 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +1 Query: 247 PVASISTPLKTCSLLSTLPFSQRATSSLPPSTTSKRTTGAYLLPLPP 387 P S S P++T L ++ + ++ LP + TG +LP+PP Sbjct: 397 PAPSFSQPVQTTDSLPLTTYTSQVSAPLPIPDLADLATGPLILPIPP 443
>P19275:VTP3_TTV1V Viral protein TPX - Thermoproteus tenax virus 1 (strain VT3) (TTV1)| Length = 474 Score = 31.6 bits (70), Expect = 5.0 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Frame = +2 Query: 74 PTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAF-HSDRLPSPHPGPTWHP 250 PT T + T PT + P P+ TP P Y + D PSP P PT P Sbjct: 330 PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTYDITYVVFDVTPSPTPTPTPTP 389 Query: 251 WP 256 P Sbjct: 390 TP 391 Score = 31.6 bits (70), Expect = 5.0 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Frame = +2 Query: 74 PTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAF-HSDRLPSPHPGPTWHP 250 PT T + T PT + P P+ TP P Y + D PSP P PT P Sbjct: 399 PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTYDITYVIFDVTPSPTPTPTPTP 458 Query: 251 WP 256 P Sbjct: 459 TP 460
>P18616:RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 - Arabidopsis thaliana| (Mouse-ear cress) Length = 1840 Score = 31.6 bits (70), Expect = 5.0 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Frame = +2 Query: 56 TQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQ--IPIYQNAFHSDRLPSPH 229 T S +PTS +S + PT + T PS +P Y P Y S SP Sbjct: 1660 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS 1719 Query: 230 PGPTWHPW-PQSRHHSRPVRFS 292 GPT + PQS +S + +S Sbjct: 1720 YGPTSPSYNPQSAKYSPSIAYS 1741
>Q24106:HID_DROME Cell death protein W - Drosophila melanogaster (Fruit fly)| Length = 410 Score = 31.6 bits (70), Expect = 5.0 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 14/141 (9%) Frame = +2 Query: 11 SQLNKHSNSERKNINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQ-IPI 187 S + S++ ++ +S +P +T SS TQ P +S +P + L+ Y+ + + Sbjct: 52 SSASSSSSASSDGASSAASQSPNTT---TSSATQTPMQSPLP----TDQVLYALYEWVRM 104 Query: 188 YQNAFHSDRL---PSPHPG----------PTWHPWPQSRHHSRPVRFSQRYPSVKEQPAX 328 YQ+ + ++ P P P P HP P S H R R S + S +E Sbjct: 105 YQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPRTSVSFSSGEEYNFF 164 Query: 329 XXXXXXXXXXXXXTCSPSPQP 391 +P P P Sbjct: 165 RQQQPQPHPSYPAPSTPQPMP 185
>Q68FK8:DHX9_XENLA ATP-dependent RNA helicase A-like protein - Xenopus laevis (African| clawed frog) Length = 1262 Score = 31.6 bits (70), Expect = 5.0 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Frame = +2 Query: 59 QSSLNPTSTCLVASSLTQFPTKSTIPKTVPS---STPLHKRYQIPIYQNAFHSDRLPSPH 229 Q +LNP + S++ + + P PS S L K Q HS +P Sbjct: 278 QVNLNPDIVKQLQSTIQELGIELPYPPEDPSQPVSLNLGKLVHFEPSQKQSHSGVVPWSP 337 Query: 230 PGPTWHPWPQSRHHSRPVRFS 292 P W+PW S P+ F+ Sbjct: 338 PQENWNPWTSSNIDEGPLAFA 358
>P61125:TNFB_PANTR Lymphotoxin-alpha precursor - Pan troglodytes (Chimpanzee)| Length = 205 Score = 31.2 bits (69), Expect = 6.6 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Frame = +2 Query: 47 NINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIY--QNAFHSDRLP 220 +++ S L PTS S F K+ PK +S+PL+ +++ ++ Q FH L Sbjct: 93 SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKA--TSSPLYLAHEVQLFSSQYPFHVPLLS 150 Query: 221 SP---HPGPTWHPWPQSRHHSRPVRFSQ 295 S +PG PW S +H + +Q Sbjct: 151 SQKMVYPG-LQEPWLHSMYHGAAFQLTQ 177
>P01374:TNFB_HUMAN Lymphotoxin-alpha precursor - Homo sapiens (Human)| Length = 205 Score = 31.2 bits (69), Expect = 6.6 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Frame = +2 Query: 47 NINTQSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIY--QNAFHSDRLP 220 +++ S L PTS S F K+ PK +S+PL+ +++ ++ Q FH L Sbjct: 93 SLSNNSLLVPTSGIYFVYSQVVFSGKAYSPKA--TSSPLYLAHEVQLFSSQYPFHVPLLS 150 Query: 221 SP---HPGPTWHPWPQSRHHSRPVRFSQ 295 S +PG PW S +H + +Q Sbjct: 151 SQKMVYPG-LQEPWLHSMYHGAAFQLTQ 177
>O88902:PTN23_RAT Tyrosine-protein phosphatase non-receptor type 23 - Rattus| norvegicus (Rat) Length = 1499 Score = 31.2 bits (69), Expect = 6.6 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Frame = +2 Query: 113 FPTKSTIPKTVPSSTPLHKRYQIPIYQNAFHSDRLPSPH--PG-PTWHPWPQSRHHSRPV 283 FP +P++VP PL Y I + LP H PG PT P P+ P Sbjct: 734 FPVPQPVPQSVPQPQPLPTPYTYSIGTKQHLTGPLPQHHFPPGIPTSFPAPRIGPQPPPQ 793 Query: 284 RFSQRYPSVKEQP 322 Q P + QP Sbjct: 794 LQPQPQPQPQPQP 806
>P53037:PSD2_YEAST Phosphatidylserine decarboxylase proenzyme 2 precursor -| Saccharomyces cerevisiae (Baker's yeast) Length = 1138 Score = 31.2 bits (69), Expect = 6.6 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Frame = +2 Query: 11 SQLNKHSNSERKNINTQSSLNPTSTCL--VASSLTQFP--TKSTIPKTVPSST 157 S L+ HS+S R N+N S N TST + V+SS T P + S++ T P ST Sbjct: 115 SGLSSHSHSSR-NLNVTSKGNQTSTSINSVSSSATPAPSHSSSSLSTTGPGST 166
>P26570:PPZ1_YEAST Serine/threonine-protein phosphatase PP-Z1 - Saccharomyces| cerevisiae (Baker's yeast) Length = 692 Score = 31.2 bits (69), Expect = 6.6 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 16/85 (18%) Frame = +2 Query: 5 FLSQLNKHSNSERKNINT-------------QSSLNPTSTCLVASSLTQFPTKSTIPKTV 145 F S + HSNS+ + + T +SS N + + S+ Q KS I KT Sbjct: 89 FPSSSHSHSNSQNELLTTPSSSSTKRPSTSRRSSYNTKAAADLPPSMIQMEPKSPILKTN 148 Query: 146 PSSTPLHKR---YQIPIYQNAFHSD 211 SST + K Y Y+NA D Sbjct: 149 NSSTHVSKHKSSYSSTYYENALTDD 173
>P14778:IL1R1_HUMAN Interleukin-1 receptor type I precursor - Homo sapiens (Human)| Length = 569 Score = 31.2 bits (69), Expect = 6.6 Identities = 13/64 (20%), Positives = 33/64 (51%) Frame = -3 Query: 942 KLKMSCNYTSSIKNPVETKKKRKELSRDDYLVGKNIHDIEIPENKNQNSLPLIWWYPSVK 763 ++++ CN T + + K + DD ++G++ + +E P NK +++L + ++ Sbjct: 243 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 302 Query: 762 NPMY 751 + Y Sbjct: 303 SRFY 306
>Q99109:REP1_USTMA Repellent protein 1 precursor [Contains: Rep1-1; Rep1-2; Rep1-3;| Rep1-4; Rep1-5; Rep1-6; Rep1-7; Rep1-8; Rep1-9; Rep1-10; Rep1-C] - Ustilago maydis (Smut fungus) Length = 652 Score = 30.8 bits (68), Expect = 8.6 Identities = 21/88 (23%), Positives = 34/88 (38%) Frame = +2 Query: 59 QSSLNPTSTCLVASSLTQFPTKSTIPKTVPSSTPLHKRYQIPIYQNAFHSDRLPSPHPGP 238 Q+ P++ C ++T P ST P P++ P K P + P P P P Sbjct: 464 QTVTKPSADCDAPPAVTPKPKPSTKPSPSPTTPPPSKDTSKPTTK--------PEPKPQP 515 Query: 239 TWHPWPQSRHHSRPVRFSQRYPSVKEQP 322 + P P+ P + P ++P Sbjct: 516 SDKPEPKPSDKPEPKPSDKPEPKPSDKP 543 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 170,576,616 Number of extensions: 3856091 Number of successful extensions: 14283 Number of sequences better than 10.0: 20 Number of HSP's gapped: 13988 Number of HSP's successfully gapped: 24 Length of query: 320 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 207 Effective length of database: 69,691,104 Effective search space: 14426058528 Effective search space used: 14426058528 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
