ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf78o13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_674430.1| Plasmodium berghei strain ANKA hypothetical pro... 48 0.059
2ref|XM_001143796.1| PREDICTED: Pan troglodytes choline/ethanolam... 46 0.23
3ref|XM_525636.2| PREDICTED: Pan troglodytes carnitine palmitoylt... 46 0.23
4gb|AC093684.4| Homo sapiens BAC clone RP11-681B22 from 2, comple... 46 0.23
5ref|XM_641105.1| Dictyostelium discoideum AX4 p21-activated prot... 44 0.92
6ref|NM_007560.3| Mus musculus bone morphogenetic protein recepto... 44 0.92
7gb|BC065106.1| Mus musculus bone morphogenetic protein receptor,... 44 0.92
8emb|AL137001.23| Human DNA sequence from clone RP11-301J16 on ch... 44 0.92
9emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 ... 44 0.92
10gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, com... 44 0.92
11ref|XM_631828.1| Dictyostelium discoideum AX4 hypothetical prote... 42 3.6
12ref|NM_152245.1| Homo sapiens carnitine palmitoyltransferase 1B ... 42 3.6
13ref|NM_004377.2| Homo sapiens carnitine palmitoyltransferase 1B ... 42 3.6
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.6
15emb|Y08683.1|HSCPT1BII H.sapiens mRNA for carnitine palmitoyltra... 42 3.6
16gb|U66828.1|HSU66828 Human carnitine palmitoyltransferase I (CPT... 42 3.6
17gb|AF218257.1|AF218257 Arabidopsis thaliana 12-oxo-phytodienoate... 42 3.6
18gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT... 42 3.6
19emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584... 42 3.6
20emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 42 3.6
21dbj|AB003286.1| Homo sapiens DNA for choline kinase like protein... 42 3.6

>ref|XM_674430.1| Plasmodium berghei strain ANKA hypothetical protein (PB000175.01.0)
            partial mRNA
          Length = 4353
 Score = 48.1 bits (24), Expect = 0.059
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 713  aaaaagtatcatcatcatcacaat 736
            ||||||||||||||||||||||||
Sbjct: 2866 aaaaagtatcatcatcatcacaat 2843



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>ref|XM_001143796.1| PREDICTED: Pan troglodytes choline/ethanolamine kinase, transcript
            variant 1 (CHKB), mRNA
          Length = 1463

 Score = 46.1 bits (23), Expect = 0.23
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 791  ggaagggaattttgatttttattttct 817
            |||||||||||||||||||| ||||||
Sbjct: 1400 ggaagggaattttgattttttttttct 1426



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>ref|XM_525636.2| PREDICTED: Pan troglodytes carnitine palmitoyltransferase 1B (CPT1B),
            mRNA
          Length = 3147

 Score = 46.1 bits (23), Expect = 0.23
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 791  ggaagggaattttgatttttattttct 817
            |||||||||||||||||||| ||||||
Sbjct: 2857 ggaagggaattttgattttttttttct 2883



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>gb|AC093684.4| Homo sapiens BAC clone RP11-681B22 from 2, complete sequence
          Length = 160142

 Score = 46.1 bits (23), Expect = 0.23
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 446  aattctcttctctcttttaattc 468
            |||||||||||||||||||||||
Sbjct: 3832 aattctcttctctcttttaattc 3810



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>ref|XM_641105.1| Dictyostelium discoideum AX4 p21-activated protein kinase (pakD)
            mRNA, complete cds
          Length = 5037

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 719  tatcatcatcatcacaatttgatgat 744
            ||||||||| ||||||||||||||||
Sbjct: 1357 tatcatcattatcacaatttgatgat 1332



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>ref|NM_007560.3| Mus musculus bone morphogenetic protein receptor, type 1B (Bmpr1b),
            mRNA
 gb|BC065143.1| Mus musculus bone morphogenetic protein receptor, type 1B, mRNA (cDNA
            clone MGC:86106 IMAGE:30629345), complete cds
          Length = 5363

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 799  attttgatttttattttctggg 820
            ||||||||||||||||||||||
Sbjct: 3889 attttgatttttattttctggg 3910



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>gb|BC065106.1| Mus musculus bone morphogenetic protein receptor, type 1B, mRNA (cDNA
            clone MGC:86041 IMAGE:30357130), complete cds
          Length = 4178

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 799  attttgatttttattttctggg 820
            ||||||||||||||||||||||
Sbjct: 3684 attttgatttttattttctggg 3705



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>emb|AL137001.23| Human DNA sequence from clone RP11-301J16 on chromosome 13 Contains a
             FSH primary response (LRPR1 homolog,rat) 1 (FSHPRH1)
             pseudogene, a novel protein similar general transcription
             factor II, i (GTF2I) (DIWS SPIN IB291 BAP135 BTKAP1 TFII-I
             WBSCR6 BAP-135), a pseudogene similar to part of ubiquitin
             specific protease 24 (USP24) (KIAA1057), two novel genes
             and the 5' end of a FSH primary response (LRPR1
             homolog,rat) 1 (FSHPRH1) pseudogene, complete sequence
          Length = 152319

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 838   atttttccctaccagataatca 859
             ||||||||||||||||||||||
Sbjct: 33424 atttttccctaccagataatca 33445



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>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3,
             complete sequence
          Length = 139040

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 558   acatacttataccaccaactac 579
             ||||||||||||||||||||||
Sbjct: 51381 acatacttataccaccaactac 51402



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>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence
          Length = 187001

 Score = 44.1 bits (22), Expect = 0.92
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 799  attttgatttttattttctggg 820
            ||||||||||||||||||||||
Sbjct: 9592 attttgatttttattttctggg 9571



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>ref|XM_631828.1| Dictyostelium discoideum AX4 hypothetical protein
           (DDBDRAFT_0187718) mRNA, complete cds
          Length = 1245

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 720 atcatcatcatcacaatttga 740
           |||||||||||||||||||||
Sbjct: 477 atcatcatcatcacaatttga 497



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>ref|NM_152245.1| Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B),
            nuclear gene encoding mitochondrial protein, transcript
            variant 2, mRNA
          Length = 2834

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 791  ggaagggaattttgatttttatttt 815
            |||||||||||||||||||| ||||
Sbjct: 2543 ggaagggaattttgatttttttttt 2567



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>ref|NM_004377.2| Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B),
            nuclear gene encoding mitochondrial protein, transcript
            variant 1, mRNA
          Length = 2879

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 791  ggaagggaattttgatttttatttt 815
            |||||||||||||||||||| ||||
Sbjct: 2588 ggaagggaattttgatttttttttt 2612



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 720      atcatcatcatcacaatttgatgat 744
                |||||||||||||| ||||||||||
Sbjct: 27097379 atcatcatcatcacgatttgatgat 27097403



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>emb|Y08683.1|HSCPT1BII H.sapiens mRNA for carnitine palmitoyltransferase I type II
          Length = 2624

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 791  ggaagggaattttgatttttatttt 815
            |||||||||||||||||||| ||||
Sbjct: 2556 ggaagggaattttgatttttttttt 2580



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>gb|U66828.1|HSU66828 Human carnitine palmitoyltransferase I (CPTI) mRNA, complete cds
          Length = 2610

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 791  ggaagggaattttgatttttatttt 815
            |||||||||||||||||||| ||||
Sbjct: 2543 ggaagggaattttgatttttttttt 2567



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>gb|AF218257.1|AF218257 Arabidopsis thaliana 12-oxo-phytodienoate reductase gene, complete
            cds
          Length = 18202

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 795  gggaattttgatttttatttt 815
            |||||||||||||||||||||
Sbjct: 7487 gggaattttgatttttatttt 7467



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>gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT987SK-384D8 complete
             sequence
          Length = 139934

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 791   ggaagggaattttgatttttatttt 815
             |||||||||||||||||||| ||||
Sbjct: 71302 ggaagggaattttgatttttttttt 71326



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>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131300

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 720   atcatcatcatcacaatttgatgat 744
             |||||||||||||| ||||||||||
Sbjct: 58858 atcatcatcatcacgatttgatgat 58834



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>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145816

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 720   atcatcatcatcacaatttgatgat 744
             |||||||||||||| ||||||||||
Sbjct: 36274 atcatcatcatcacgatttgatgat 36298



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>dbj|AB003286.1| Homo sapiens DNA for choline kinase like protein and muscle type
             carnitine palmitoyltransferase I, partial and complete cds
          Length = 11198

 Score = 42.1 bits (21), Expect = 3.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 791   ggaagggaattttgatttttatttt 815
             |||||||||||||||||||| ||||
Sbjct: 10405 ggaagggaattttgatttttttttt 10429


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 179,815,020
Number of extensions: 10669220
Number of successful extensions: 262467
Number of sequences better than 10.0: 21
Number of HSP's gapped: 262467
Number of HSP's successfully gapped: 21
Length of query: 962
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 939
Effective length of database: 18,503,978,556
Effective search space: 17375235864084
Effective search space used: 17375235864084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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