| Clone Name | FLbaf78o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_674430.1| Plasmodium berghei strain ANKA hypothetical protein (PB000175.01.0) partial mRNA Length = 4353 Score = 48.1 bits (24), Expect = 0.059 Identities = 24/24 (100%) Strand = Plus / Minus Query: 713 aaaaagtatcatcatcatcacaat 736 |||||||||||||||||||||||| Sbjct: 2866 aaaaagtatcatcatcatcacaat 2843
>ref|XM_001143796.1| PREDICTED: Pan troglodytes choline/ethanolamine kinase, transcript variant 1 (CHKB), mRNA Length = 1463 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttattttct 817 |||||||||||||||||||| |||||| Sbjct: 1400 ggaagggaattttgattttttttttct 1426
>ref|XM_525636.2| PREDICTED: Pan troglodytes carnitine palmitoyltransferase 1B (CPT1B), mRNA Length = 3147 Score = 46.1 bits (23), Expect = 0.23 Identities = 26/27 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttattttct 817 |||||||||||||||||||| |||||| Sbjct: 2857 ggaagggaattttgattttttttttct 2883
>gb|AC093684.4| Homo sapiens BAC clone RP11-681B22 from 2, complete sequence Length = 160142 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Minus Query: 446 aattctcttctctcttttaattc 468 ||||||||||||||||||||||| Sbjct: 3832 aattctcttctctcttttaattc 3810
>ref|XM_641105.1| Dictyostelium discoideum AX4 p21-activated protein kinase (pakD) mRNA, complete cds Length = 5037 Score = 44.1 bits (22), Expect = 0.92 Identities = 25/26 (96%) Strand = Plus / Minus Query: 719 tatcatcatcatcacaatttgatgat 744 ||||||||| |||||||||||||||| Sbjct: 1357 tatcatcattatcacaatttgatgat 1332
>ref|NM_007560.3| Mus musculus bone morphogenetic protein receptor, type 1B (Bmpr1b), mRNA gb|BC065143.1| Mus musculus bone morphogenetic protein receptor, type 1B, mRNA (cDNA clone MGC:86106 IMAGE:30629345), complete cds Length = 5363 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 799 attttgatttttattttctggg 820 |||||||||||||||||||||| Sbjct: 3889 attttgatttttattttctggg 3910
>gb|BC065106.1| Mus musculus bone morphogenetic protein receptor, type 1B, mRNA (cDNA clone MGC:86041 IMAGE:30357130), complete cds Length = 4178 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 799 attttgatttttattttctggg 820 |||||||||||||||||||||| Sbjct: 3684 attttgatttttattttctggg 3705
>emb|AL137001.23| Human DNA sequence from clone RP11-301J16 on chromosome 13 Contains a FSH primary response (LRPR1 homolog,rat) 1 (FSHPRH1) pseudogene, a novel protein similar general transcription factor II, i (GTF2I) (DIWS SPIN IB291 BAP135 BTKAP1 TFII-I WBSCR6 BAP-135), a pseudogene similar to part of ubiquitin specific protease 24 (USP24) (KIAA1057), two novel genes and the 5' end of a FSH primary response (LRPR1 homolog,rat) 1 (FSHPRH1) pseudogene, complete sequence Length = 152319 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 838 atttttccctaccagataatca 859 |||||||||||||||||||||| Sbjct: 33424 atttttccctaccagataatca 33445
>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3, complete sequence Length = 139040 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Plus Query: 558 acatacttataccaccaactac 579 |||||||||||||||||||||| Sbjct: 51381 acatacttataccaccaactac 51402
>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence Length = 187001 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Minus Query: 799 attttgatttttattttctggg 820 |||||||||||||||||||||| Sbjct: 9592 attttgatttttattttctggg 9571
>ref|XM_631828.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0187718) mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 720 atcatcatcatcacaatttga 740 ||||||||||||||||||||| Sbjct: 477 atcatcatcatcacaatttga 497
>ref|NM_152245.1| Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA Length = 2834 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 2543 ggaagggaattttgatttttttttt 2567
>ref|NM_004377.2| Homo sapiens carnitine palmitoyltransferase 1B (muscle) (CPT1B), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA Length = 2879 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 2588 ggaagggaattttgatttttttttt 2612
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 720 atcatcatcatcacaatttgatgat 744 |||||||||||||| |||||||||| Sbjct: 27097379 atcatcatcatcacgatttgatgat 27097403
>emb|Y08683.1|HSCPT1BII H.sapiens mRNA for carnitine palmitoyltransferase I type II Length = 2624 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 2556 ggaagggaattttgatttttttttt 2580
>gb|U66828.1|HSU66828 Human carnitine palmitoyltransferase I (CPTI) mRNA, complete cds Length = 2610 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 2543 ggaagggaattttgatttttttttt 2567
>gb|AF218257.1|AF218257 Arabidopsis thaliana 12-oxo-phytodienoate reductase gene, complete cds Length = 18202 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 795 gggaattttgatttttatttt 815 ||||||||||||||||||||| Sbjct: 7487 gggaattttgatttttatttt 7467
>gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT987SK-384D8 complete sequence Length = 139934 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 71302 ggaagggaattttgatttttttttt 71326
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 720 atcatcatcatcacaatttgatgat 744 |||||||||||||| |||||||||| Sbjct: 58858 atcatcatcatcacgatttgatgat 58834
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 720 atcatcatcatcacaatttgatgat 744 |||||||||||||| |||||||||| Sbjct: 36274 atcatcatcatcacgatttgatgat 36298
>dbj|AB003286.1| Homo sapiens DNA for choline kinase like protein and muscle type carnitine palmitoyltransferase I, partial and complete cds Length = 11198 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 791 ggaagggaattttgatttttatttt 815 |||||||||||||||||||| |||| Sbjct: 10405 ggaagggaattttgatttttttttt 10429 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 179,815,020 Number of extensions: 10669220 Number of successful extensions: 262467 Number of sequences better than 10.0: 21 Number of HSP's gapped: 262467 Number of HSP's successfully gapped: 21 Length of query: 962 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 939 Effective length of database: 18,503,978,556 Effective search space: 17375235864084 Effective search space used: 17375235864084 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)