ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf72g23 |
|---|---|
| Clone Library Name | barley_pub |
>Q6DG43:UBTD2_DANRE Ubiquitin domain-containing protein 2 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 240 Score = 91.3 bits (225), Expect = 4e-18 Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 4/85 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA+A D L+Q I+D A I + + +T C Sbjct: 49 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTEC 108 Query: 355 YDERGAKYELPKYVLSEPTNLIREE 429 YDE G +Y+LP Y LS P N+I E+ Sbjct: 109 YDELGNRYQLPVYCLSPPVNMIEEK 133
>Q6GL38:UBTD1_XENTR Ubiquitin domain-containing protein 1 - Xenopus tropicalis (Western| clawed frog) (Silurana tropicalis) Length = 240 Score = 90.1 bits (222), Expect = 8e-18 Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q IVD A I + + +T C Sbjct: 50 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTEC 109 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y L+ P NLI E Sbjct: 110 YDELGTRYQLPVYCLAPPVNLIME 133
>Q4V8W7:UBTD1_DANRE Ubiquitin domain-containing protein 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 227 Score = 89.7 bits (221), Expect = 1e-17 Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q IVD A I + + +T C Sbjct: 47 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTEC 106 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y L+ P NLI E Sbjct: 107 YDELGNRYQLPVYCLAPPVNLISE 130
>Q6PGH0:UBTD2_MOUSE Ubiquitin domain-containing protein 2 - Mus musculus (Mouse)| Length = 234 Score = 89.0 bits (219), Expect = 2e-17 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + +T C Sbjct: 49 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTEC 108 Query: 355 YDERGAKYELPKYVLSEPTNLIREE 429 YDE G +Y+LP Y L+ P N+I E+ Sbjct: 109 YDELGNRYQLPVYCLAPPINMIEEK 133
>Q8WUN7:UBTD2_HUMAN Ubiquitin domain-containing protein 2 - Homo sapiens (Human)| Length = 234 Score = 89.0 bits (219), Expect = 2e-17 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + +T C Sbjct: 49 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTEC 108 Query: 355 YDERGAKYELPKYVLSEPTNLIREE 429 YDE G +Y+LP Y L+ P N+I E+ Sbjct: 109 YDELGNRYQLPVYCLAPPINMIEEK 133
>Q5EAE3:UBTD2_BOVIN Ubiquitin domain-containing protein 2 - Bos taurus (Bovine)| Length = 234 Score = 89.0 bits (219), Expect = 2e-17 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + +T C Sbjct: 49 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTEC 108 Query: 355 YDERGAKYELPKYVLSEPTNLIREE 429 YDE G +Y+LP Y L+ P N+I E+ Sbjct: 109 YDELGNRYQLPVYCLAPPINMIEEK 133
>Q640W6:UBTD1_XENLA Ubiquitin domain-containing protein 1 - Xenopus laevis (African| clawed frog) Length = 234 Score = 89.0 bits (219), Expect = 2e-17 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + +T C Sbjct: 49 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTEC 108 Query: 355 YDERGAKYELPKYVLSEPTNLIREE 429 YDE G +Y+LP Y L+ P N+I E+ Sbjct: 109 YDELGNRYQLPVYCLAPPINMIEEK 133
>Q68FV8:UBTD1_RAT Ubiquitin domain-containing protein 1 - Rattus norvegicus (Rat)| Length = 227 Score = 85.5 bits (210), Expect = 2e-16 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + + C Sbjct: 46 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCEC 105 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y LS P NL+ E Sbjct: 106 YDELGNRYQLPIYCLSPPVNLLLE 129
>Q91WB7:UBTD1_MOUSE Ubiquitin domain-containing protein 1 - Mus musculus (Mouse)| Length = 227 Score = 85.5 bits (210), Expect = 2e-16 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + + C Sbjct: 46 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCEC 105 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y LS P NL+ E Sbjct: 106 YDELGNRYQLPIYCLSPPVNLLLE 129
>Q9HAC8:UBTD1_HUMAN Ubiquitin domain-containing protein 1 - Homo sapiens (Human)| Length = 227 Score = 85.5 bits (210), Expect = 2e-16 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + + C Sbjct: 46 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCEC 105 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y LS P NL+ E Sbjct: 106 YDELGNRYQLPIYCLSPPVNLLLE 129
>Q3ZBQ1:UBTD1_BOVIN Ubiquitin domain-containing protein 1 - Bos taurus (Bovine)| Length = 227 Score = 85.5 bits (210), Expect = 2e-16 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAAEA----DLSLSQTIVDSAGIIVSNPDMTLC 354 +L+ R+EFWDT P + G+KEIWDAL+AAA A D L+Q I+D A I + + + C Sbjct: 46 QLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCEC 105 Query: 355 YDERGAKYELPKYVLSEPTNLIRE 426 YDE G +Y+LP Y LS P NL+ E Sbjct: 106 YDELGNRYQLPIYCLSPPVNLLLE 129
>Q9HDW4:YFW7_SCHPO Uncharacterized protein PB2B4.07 - Schizosaccharomyces pombe| (Fission yeast) Length = 239 Score = 49.3 bits (116), Expect = 2e-05 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = +1 Query: 187 ELKQMREEFWDTTPHYGGQKEIWDALRAAA----EADLSLSQTIVDSAGIIVSNPDMTL- 351 E++ R EFW+T YGG KEIWD L E + + + +A + + D++ Sbjct: 43 EVEVRRNEFWETCWAYGGSKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPENDISKG 102 Query: 352 CYDERGAKYELPKYVLSEP 408 YD +G YE+PK V P Sbjct: 103 VYDSKGTFYEIPKIVARIP 121
>P46679:STB2_YEAST Protein STB2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 850 Score = 32.0 bits (71), Expect = 2.6 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 575 VVYILEVVHVSCNSFNVLGKKYVLVGLACGDTMKCI 682 VV ++ ++ +S + FN+L K Y GL C DT + I Sbjct: 298 VVEMVTLIQISLSYFNLLSKNYQTDGLLCEDTKRAI 333 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 134,688,615 Number of extensions: 2933021 Number of successful extensions: 7367 Number of sequences better than 10.0: 13 Number of HSP's gapped: 7354 Number of HSP's successfully gapped: 13 Length of query: 246 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 136 Effective length of database: 70,513,989 Effective search space: 9589902504 Effective search space used: 9589902504 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
