ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf81l03 |
|---|---|
| Clone Library Name | barley_pub |
>Q499P8:CP058_RAT UPF0420 protein C16orf58 homolog - Rattus norvegicus (Rat)| Length = 466 Score = 156 bits (394), Expect = 4e-37 Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 6/333 (1%) Frame = +1 Query: 679 LLLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKG-AIPTAAAVNW 855 +LLP G+P SVS DYL Y LW VQ AS +SG L+TQA+L +G+G A +AA W Sbjct: 74 VLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTW 133 Query: 856 VLKDGLGYLSKILLSKF-GRHFDVNPKGWRLFADLLENTAYGLEILTPVFPHLFVPIXXX 1032 ++KD G L +I+ + + G D N K WRLFAD+L +TA LEI+ P++P F Sbjct: 134 LVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVST 193 Query: 1033 XXXXXXXXXXXXXXTRSCFFAGFAVQRNFAEVIAKGEAQGMVSKFVGIMLGIALANQIGS 1212 TR+ A + N A+V AK +Q V G+++ + + + Sbjct: 194 SNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSD 253 Query: 1213 SVPLALISFAGVTVVHMYCNLKSYQSIQLRTLNPYRASLVFSEYLLSGQVPSVKEVNDEE 1392 + L+L F +T +H+Y N ++ +++ L TLN R LV +L G+V N E Sbjct: 254 CLSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHFLQRGEVLEPASANQME 313 Query: 1393 PL----FPNSSMGAQLKQSEILSAEAKDAADTIYRRLQLGSKLSEIIENKEDAYALFDLY 1560 PL +P+ S+ + ++S+ S+L +++E ++ Y L Sbjct: 314 PLWTGFWPSLSLSLGVPLHHLVSSV---------------SELKQLVEGHQEPYLL---- 354 Query: 1561 KNEQYLLTDYKGKFCVVLKEGSSPEDMLKSVFH 1659 + + V L + + PE +L++ H Sbjct: 355 -----CWNQSQNQVQVALSQVAGPETVLRAATH 382
>Q91W34:CP058_MOUSE UPF0420 protein C16orf58 homolog - Mus musculus (Mouse)| Length = 466 Score = 154 bits (388), Expect = 2e-36 Identities = 101/333 (30%), Positives = 160/333 (48%), Gaps = 6/333 (1%) Frame = +1 Query: 679 LLLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKG-AIPTAAAVNW 855 +LLP G+P SVS DYL Y LW VQ AS +SG L+TQA+L +G+G A +AA W Sbjct: 74 VLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTW 133 Query: 856 VLKDGLGYLSKILLSKF-GRHFDVNPKGWRLFADLLENTAYGLEILTPVFPHLFVPIXXX 1032 ++KD G L +I+L+ + G D N K WRLFAD+L + A LEI+ P++P F Sbjct: 134 LVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVST 193 Query: 1033 XXXXXXXXXXXXXXTRSCFFAGFAVQRNFAEVIAKGEAQGMVSKFVGIMLGIALANQIGS 1212 TR+ A + N A+V AK +Q V G+++ + + + Sbjct: 194 SNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSD 253 Query: 1213 SVPLALISFAGVTVVHMYCNLKSYQSIQLRTLNPYRASLVFSEYLLSGQVPSVKEVNDEE 1392 L+L F +T +H+Y N ++ +++ L TLN R LV +L G+V N E Sbjct: 254 CPSLSLGCFVLLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQRGEVLEPASANQME 313 Query: 1393 PL----FPNSSMGAQLKQSEILSAEAKDAADTIYRRLQLGSKLSEIIENKEDAYALFDLY 1560 PL +P+ S+ + ++S+ S+L +++E + Y L Sbjct: 314 PLWTGFWPSLSLSLGVPLHHLVSSV---------------SELKQLVEGHHEPYLL---- 354 Query: 1561 KNEQYLLTDYKGKFCVVLKEGSSPEDMLKSVFH 1659 + + V L + + PE +L++ H Sbjct: 355 -----CWNKSRNQVQVALSQEAGPETVLRAATH 382
>Q5R8F6:CP058_PONPY UPF0420 protein C16orf58 homolog - Pongo pygmaeus (Orangutan)| Length = 468 Score = 152 bits (384), Expect = 6e-36 Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 9/336 (2%) Frame = +1 Query: 679 LLLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKG-AIPTAAAVNW 855 + LP G+P SVS DYL Y LW VQ AS +SG L+TQA+L +G+G A +AA W Sbjct: 76 VFLPQGFPDSVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATW 135 Query: 856 VLKDGLGYLSKILLSKF-GRHFDVNPKGWRLFADLLENTAYGLEILTPVFPHLFVPIXXX 1032 ++KD G L +I+ + + G D N K WRLFAD+L + A LEI+ PV+P F Sbjct: 136 LVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVST 195 Query: 1033 XXXXXXXXXXXXXXTRSCFFAGFAVQRNFAEVIAKGEAQGMVSKFVGIMLGIALANQIGS 1212 TR+ A + N A+V AK +Q + VG+++ + + + Sbjct: 196 SNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLVGLLVSLLMLPLVSG 255 Query: 1213 SVPLALISFAGVTVVHMYCNLKSYQSIQLRTLNPYRASLVFSEYLLSGQVPSVKEVNDEE 1392 +L F +T +H+Y N ++ +++ + TLN R LV YL G+V + N E Sbjct: 256 CPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLNPTAANRME 315 Query: 1393 PLF------PNSSMGAQLKQSEILSAEAKDAADTIYRRLQLGSKLSEIIENKEDAYAL-F 1551 PL+ P+ S+G L +R + +L +++E ++ Y L + Sbjct: 316 PLWTGFWPAPSLSLGVPL-----------------HRLVSSVFELQQLVEGHQEPYLLCW 358 Query: 1552 DLYKNEQYLLTDYKGKFCVVLKEGSSPEDMLKSVFH 1659 D +N+ VVL + + P+ +L++ H Sbjct: 359 DQSRNQVQ----------VVLNQKAGPKTILRAATH 384
>Q96GQ5:CP058_HUMAN UPF0420 protein C16orf58 - Homo sapiens (Human)| Length = 468 Score = 151 bits (382), Expect = 1e-35 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 9/336 (2%) Frame = +1 Query: 679 LLLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKG-AIPTAAAVNW 855 + LP G+P SVS DYL Y LW VQ AS +SG L+TQA+L +G+G A +AA W Sbjct: 76 VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATW 135 Query: 856 VLKDGLGYLSKILLSKF-GRHFDVNPKGWRLFADLLENTAYGLEILTPVFPHLFVPIXXX 1032 ++KD G L +I+ + + G D N K WRLFAD+L + A LEI+ PV+P F Sbjct: 136 LVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVST 195 Query: 1033 XXXXXXXXXXXXXXTRSCFFAGFAVQRNFAEVIAKGEAQGMVSKFVGIMLGIALANQIGS 1212 TR+ A + N A+V AK +Q + G+++ + + + Sbjct: 196 SNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSG 255 Query: 1213 SVPLALISFAGVTVVHMYCNLKSYQSIQLRTLNPYRASLVFSEYLLSGQVPSVKEVNDEE 1392 +L F +T +H+Y N ++ +++ + TLN R LV YL G+V N E Sbjct: 256 CPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRME 315 Query: 1393 PLF------PNSSMGAQLKQSEILSAEAKDAADTIYRRLQLGSKLSEIIENKEDAYAL-F 1551 PL+ P+ S+G L +R + +L +++E +++Y L + Sbjct: 316 PLWTGFWPAPSLSLGVPL-----------------HRLVSSVFELQQLVEGHQESYLLCW 358 Query: 1552 DLYKNEQYLLTDYKGKFCVVLKEGSSPEDMLKSVFH 1659 D +N+ VVL + + P+ +L++ H Sbjct: 359 DQSQNQVQ----------VVLNQKAGPKTILRAATH 384
>Q306W7:POLS_EEEV8 Structural polyprotein - Eastern equine encephalitis virus (strain| PE-3.0815) (EEEV) (Eastern equine encephalomyelitis virus) Length = 1242 Score = 36.6 bits (83), Expect = 0.48 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Frame = -3 Query: 987 NLQPISCVFQKI---CKQPPSLGVHIKMSPK-----FRQQYLAQVAKPIFQHPIHCGGRR 832 +L + CV I C QPP + + +P Q Y +Q + + C GRR Sbjct: 262 SLTTVMCVLANITFPCDQPPCMPCCYEKNPHETLSMLEQNYDSQAYDLLLDAAVKCNGRR 321 Query: 831 NRSFTQTNCIQQRLRREHAADLAS 760 R +T+ Q +L R + AD ++ Sbjct: 322 TRRDLETHFTQYKLARPYIADCSN 345
>P52168:PNR_DROME GATA-binding factor-A - Drosophila melanogaster (Fruit fly)| Length = 540 Score = 33.9 bits (76), Expect = 3.1 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -2 Query: 1042 QLQRLHQWEQTGEETPESKSPAHKLCFPEDLQTAAIPWGSHQNVAQISTTVSCSSSQAHL 863 Q Q+ Q +Q ++ + + AH+ CFP QT + Q Q +++ SS QAHL Sbjct: 345 QQQQQQQQQQQQQQQQQQQQSAHQQCFPLYGQTT-----TQQQHQQHGHSMTSSSGQAHL 399 Query: 862 SA 857 SA Sbjct: 400 SA 401
>Q39BZ1:METK_BURS3 S-adenosylmethionine synthetase - Burkholderia sp. (strain 383)| (Burkholderia cepacia (strain ATCC 17760 / NCIB 9086 / R18194)) Length = 395 Score = 33.1 bits (74), Expect = 5.3 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Frame = +1 Query: 769 ISGVLSTQALL---YAVGLGKGAIPTAAAVNWVLKDGLGYLSKILLSKFGR-HFDVNPKG 936 ++ L+++AL+ YA+G+ + PT+ VN G G +S +++K R HFD+ PKG Sbjct: 290 VAAGLASRALIQVSYAIGVAE---PTSVMVNTF---GTGRVSDAVITKLVREHFDLRPKG 343 Query: 937 WRLFADLL-----ENTAYG 978 DLL + AYG Sbjct: 344 IIKMLDLLRPIYEKTAAYG 362
>Q9HJD4:FEN_THEAC Flap structure-specific endonuclease - Thermoplasma acidophilum| Length = 336 Score = 32.7 bits (73), Expect = 6.9 Identities = 22/88 (25%), Positives = 41/88 (46%) Frame = +1 Query: 1330 VFSEYLLSGQVPSVKEVNDEEPLFPNSSMGAQLKQSEILSAEAKDAADTIYRRLQLGSKL 1509 V+ EY++ +V S ++N ++ + +G + I AK A I + + S L Sbjct: 203 VYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEG-IKGIGAKKALALIKKEGDIKSVL 261 Query: 1510 SEIIENKEDAYALFDLYKNEQYLLTDYK 1593 I +N E+ + D +KN + D+K Sbjct: 262 KHIGKNIENLDEIIDFFKNPPVVDYDFK 289 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 341,245,457 Number of extensions: 7010046 Number of successful extensions: 17535 Number of sequences better than 10.0: 8 Number of HSP's gapped: 17514 Number of HSP's successfully gapped: 8 Length of query: 773 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 652 Effective length of database: 67,496,744 Effective search space: 44007877088 Effective search space used: 44007877088 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
