ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf78l08 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os08g27850:12008.t04261:unspliced-genomic endothelial differentiation-related factor 1, putative, expressed| Length = 3231 Score = 96.4 bits (204), Expect(5) = 4e-65 Identities = 39/48 (81%), Positives = 44/48 (91%) Frame = +1 / +1 Query: 163 DMAGIGPLRQDWEPIVVRKRAQNAADKKDEKAVNAARRSGAEIDTTKK 306 +MAGIGP+RQDWEP+VVRK+A AA KKDEKAVNAARRSGAEI+T KK Sbjct: 109 EMAGIGPIRQDWEPVVVRKKAPTAAAKKDEKAVNAARRSGAEIETMKK 252 Score = 91.8 bits (194), Expect(5) = 4e-65 Identities = 39/42 (92%), Positives = 39/42 (92%) Frame = +1 / +2 Query: 472 QMINEKPQVIQEYESGKAIPNNQIIGKLERALGAKLRSKK*C 597 QMINEKPQVIQEYESGKAIPN QIIGKLERALG KLR KK*C Sbjct: 2576 QMINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK*C 2701 Score = 65.2 bits (136), Expect(5) = 4e-65 Identities = 28/33 (84%), Positives = 30/33 (90%) Frame = +1 / +2 Query: 310 NAGTNKAASSGTSLNTKRLDDDTENLSHERVSS 408 NAGTNKAASSGTSLNTKRLDDDTE+L+ E SS Sbjct: 653 NAGTNKAASSGTSLNTKRLDDDTESLARESSSS 751 Score = 53.3 bits (110), Expect(5) = 4e-65 Identities = 21/27 (77%), Positives = 23/27 (85%) Frame = +3 / +2 Query: 393 *ACFKRPEEKPYASKAG*EDDPGTTCS 473 *AC K PEEKP+ASKAG EDDPGT C+ Sbjct: 2384 *ACLK*PEEKPHASKAGQEDDPGTACT 2464 Score = 30.4 bits (60), Expect(5) = 4e-65 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = +3 / +1 Query: 750 RVALNMQPDMLTRVVYAWCLL 812 RV L+++ D++T VVYA CLL Sbjct: 2890 RVVLDLKTDLITCVVYA*CLL 2952 Score = 62.9 bits (131), Expect(6) = 3e-36 Identities = 25/26 (96%), Positives = 26/26 (100%) Frame = -3 / -3 Query: 470 ASCAWVIFLSSLACIRFFFRSLETRS 393 ASCAWVIFLSSLAC+RFFFRSLETRS Sbjct: 2461 ASCAWVIFLSSLACMRFFFRSLETRS 2384 Score = 52.4 bits (108), Expect(6) = 3e-36 Identities = 20/33 (60%), Positives = 22/33 (66%) Frame = -1 / -2 Query: 406 LKHAHGKGSQCRRRAAWC*GKFR*MQPCSFQRY 308 LK HG+GS+CR AAWC*G PC FQRY Sbjct: 749 LKMTHGQGSRCRHPAAWC*GMCHWTPPCLFQRY 651 Score = 47.8 bits (98), Expect(6) = 3e-36 Identities = 19/20 (95%), Positives = 19/20 (95%) Frame = -3 / -1 Query: 533 FGIALPDSYSWITCGFSLII 474 FGIALPDSYSWIT GFSLII Sbjct: 2637 FGIALPDSYSWITWGFSLII 2578 Score = 44.6 bits (91), Expect(6) = 3e-36 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -2 / -1 Query: 216 PHHYRLPVLPERTNPSHI 163 PHH+RLPVLP+RTNP H+ Sbjct: 162 PHHHRLPVLPDRTNPGHL 109 Score = 26.3 bits (51), Expect(6) = 3e-36 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = -3 / -2 Query: 308 YFLVVSISAPERR 270 +F +VSISAPERR Sbjct: 254 HFFMVSISAPERR 216 Score = 22.1 bits (42), Expect(6) = 3e-36 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 / -2 Query: 811 NKHQA*TTRVNMSGCMFNATL 749 NKH A*TT+V S + TL Sbjct: 2951 NKHHA*TTQVIKSVLRSSTTL 2889 Score = 52.4 bits (108), Expect(4) = 5e-28 Identities = 24/42 (57%), Positives = 32/42 (76%) Frame = +3 / +1 Query: 471 SDDQ*EATGDPGVRVGQGDSEQSDNWKAREGTWS*AA*QEVM 596 +DDQ*EA GDPGVRV SE +D+ +A +G+W+ AA QE+M Sbjct: 2575 TDDQ*EAPGDPGVRVR*SYSEPADHREA*KGSWNKAARQEIM 2700 Score = 51.5 bits (106), Expect(4) = 5e-28 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = +2 / +1 Query: 392 MSVFQAT*RKTLCKQGWIRR*PRHNL 469 MSV Q T*RKT CKQGW RR*PRH+L Sbjct: 2383 MSVSQVT*RKTSCKQGWTRR*PRHSL 2460 Score = 45.5 bits (93), Expect(4) = 5e-28 Identities = 20/33 (60%), Positives = 23/33 (69%) Frame = +3 / +1 Query: 309 *RWNEQGCI*RNFPQHQAARRRH*EPFP*ACFK 407 *RWN+QG + + PQHQAA RH EP P* FK Sbjct: 652 *RWNKQGGVQWHIPQHQAAG*RHREPCP*VIFK 750 Score = 41.4 bits (84), Expect(4) = 5e-28 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = +2 / +2 Query: 167 WLGLVRSGRTGSR*WCG 217 W GLVRSGRTGSR WCG Sbjct: 113 WPGLVRSGRTGSRWWCG 163 Score = 52.4 bits (108), Expect(4) = 1e-22 Identities = 22/26 (84%), Positives = 23/26 (88%) Frame = -1 / -1 Query: 469 QVVPGSSSYPALLA*GFSSGRLKHAH 392 Q VPGSSS PALLA*GFSSG L+HAH Sbjct: 2460 QAVPGSSSCPALLA*GFSSGHLRHAH 2383 Score = 40.9 bits (83), Expect(4) = 1e-22 Identities = 24/41 (58%), Positives = 26/41 (63%) Frame = -1 / -2 Query: 595 ITSCYAA*LQVPSRAFQLSDCSESPCPTRTPGSPVASH*SS 473 I SC AA Q P +A + S SE TRTPGSP ASH*SS Sbjct: 2699 IISCRAALFQEPFQASR*SAGSE*LYLTRTPGSPGASH*SS 2577 Score = 39.6 bits (80), Expect(4) = 1e-22 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = -3 / -2 Query: 215 RTTIGSQSCLSGPIPAIS 162 RTT GSQSCL GPIPAIS Sbjct: 161 RTTTGSQSCLIGPIPAIS 108 Score = 39.1 bits (79), Expect(4) = 1e-22 Identities = 20/34 (58%), Positives = 23/34 (67%) Frame = -2 / -3 Query: 408 A*NTLMGKVLSVVVEPLGVEGSSARCSLVRSSVI 307 A* L GK L VV++PLGVEG + LV SSVI Sbjct: 751 A*R*LTGKALGVVIQPLGVEGCATGRRLVCSSVI 650 Score = 63.4 bits (132), Expect(2) = 7e-11 Identities = 27/34 (79%), Positives = 32/34 (94%) Frame = +1 / +3 Query: 376 TENLSHERVSSDLKKNLMQARLDKKMTQAQLAQM 477 ++++ ERVSSDLKKNLMQARLDKKMTQAQLAQ+ Sbjct: 2367 SQHMLDERVSSDLKKNLMQARLDKKMTQAQLAQV 2468 Score = 28.1 bits (55), Expect(2) = 7e-11 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = +3 / +3 Query: 156 SGRYGWDWSAQAGLGA 203 S R G DWS QAGLGA Sbjct: 102 SRRDGRDWSDQAGLGA 149 Score = 57.0 bits (118), Expect(2) = 1e-09 Identities = 22/32 (68%), Positives = 28/32 (87%) Frame = -2 / -2 Query: 468 KLCLGHLLIQPCLHKVFLQVA*NTLMGKVLSV 373 KLCLGHLL+QPCLH+VFLQV *+TL+ +L + Sbjct: 2459 KLCLGHLLVQPCLHEVFLQVT*DTLI*HMLRI 2364 Score = 30.4 bits (60), Expect(2) = 1e-09 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = -3 / -1 Query: 347 EVPLDAALFVPAL 309 +VPLDAALFVPAL Sbjct: 690 DVPLDAALFVPAL 652
>LOC_Os06g39240:12006.t03622:unspliced-genomic endothelial differentiation-related factor 1, putative, expressed| Length = 845 Score = 92.7 bits (196), Expect = 3e-18 Identities = 40/97 (41%), Positives = 63/97 (64%) Frame = +1 / +2 Query: 298 TKKYNAGTNKAASSGTSLNTKRLDDDTENLSHERVSSDLKKNLMQARLDKKMTQAQLAQM 477 T + A A++G + ++LD+ TE RV ++++ + +AR+ K +QA+LA+ Sbjct: 203 TVRKAAAGTNKAAAGAAAPARKLDESTEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKR 382 Query: 478 INEKPQVIQEYESGKAIPNNQIIGKLERALGAKLRSK 588 INE+ QV+QEYESGKA+P ++ K+ERAL KLR K Sbjct: 383 INERAQVVQEYESGKAVPVQAVLAKMERALEVKLRGK 493 Score = 71.2 bits (149), Expect = 1e-11 Identities = 28/57 (49%), Positives = 39/57 (68%) Frame = +1 / +2 Query: 178 GPLRQDWEPIVVRKRAQNAADKKDEKAVNAARRSGAEIDTTKKYNAGTNKAASSGTS 348 G + QDWEP+V+R+ AAD K +AVN A R+GA ++T +K AGTNKAA+ + Sbjct: 86 GNITQDWEPVVLRRTKPKAADLKSTRAVNQAMRTGAPVETVRKAAAGTNKAAAGAAA 256 Score = 32.2 bits (64), Expect(3) = 6e-05 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -3 / -3 Query: 530 GIALPDSYSWITCGFSLII*ASCAWV 453 G ALP SYS TC SL+ AS AW+ Sbjct: 435 GTALPLSYSCTTCARSLMRLASSAWL 358 Score = 28.1 bits (55), Expect(3) = 6e-05 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = -3 / -3 Query: 332 AALFVPALYFLVVSISAPER 273 AALFVPA F VS AP R Sbjct: 240 AALFVPAAAFRTVSTGAPVR 181 Score = 22.6 bits (43), Expect(3) = 6e-05 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -3 / -3 Query: 215 RTTIGSQSCLSGPI 174 R+T GSQSC+ P+ Sbjct: 123 RSTTGSQSCVMLPL 82
>LOC_Os06g24130:12006.t02225:unspliced-genomic conserved hypothetical protein| Length = 2106 Score = 35.9 bits (72), Expect = 0.40 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 / +2 Query: 418 SSGRLKHAHGKGSQCRRRAAWC*GKFR*MQPCSFQRYTSWW 296 ++G KH G G RRR W G+ R C ++R++ WW Sbjct: 1877 AAGGDKHGGGLGLALRRRFRWGIGEERRGPVCGWERWS*WW 1999
>LOC_Os03g63580:12003.t05575:unspliced-genomic hydrolase, acting on ester bonds, putative, expressed| Length = 1620 Score = 29.0 bits (57), Expect(2) = 1.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 / -3 Query: 424 GFSSGRLKHAHGKGSQCRRRA 362 G SSGR G GS+CRRR+ Sbjct: 685 GASSGRRAWTAGTGSRCRRRS 623 Score = 22.6 bits (43), Expect(2) = 1.2 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -1 / -3 Query: 373 RRRAAWC 353 RRRAAWC Sbjct: 580 RRRAAWC 560
>LOC_Os10g17510:12010.t01309:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 4299 Score = 26.7 bits (52), Expect(2) = 1.9 Identities = 7/20 (35%), Positives = 17/20 (85%) Frame = +3 / +2 Query: 795 YAWCLLLAFANTSVYCEVIT 854 +++CL+L +A+ ++YC++ T Sbjct: 3014 FSFCLVLYYADINLYCQLST 3073 Score = 24.0 bits (46), Expect(2) = 1.9 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +2 / +1 Query: 695 LCITIFSYSKACLSYVECKSCI 760 +C++ F S + + CKSCI Sbjct: 2854 ICMSPFCSSSSFSQRISCKSCI 2919
>LOC_Os04g33820:12004.t03058:unspliced-genomic F-box domain containing protein, expressed| Length = 1299 Score = 33.6 bits (67), Expect = 2.0 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +1 / +3 Query: 118 RPSEEICRVRPENQGDMAGIGPLRQDWEPIVVRKRAQNAADKKDEKAVNAARRSGAEIDT 297 R EE+ RVR E +G+ G R P+++R++ A+ + + G E + Sbjct: 828 RGEEEV*RVREEQEGEEGEQGATRGAHRPVLLRRQRHGRAELRRRRGAPVIGGCG*EKER 1007 Query: 298 TK 303 TK Sbjct: 1008 TK 1013
>LOC_Os10g11370:12010.t00937:unspliced-genomic protease inhibitor/seed storage/LTP family protein| Length = 3154 Score = 33.1 bits (66), Expect = 2.7 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -1 / -1 Query: 532 SESPCPTRTPGSPVASH*SSEQVVPGSSS 446 S +P P RT GSP+AS E+ PGS++ Sbjct: 403 STAPAPPRTAGSPLASAAGKEERWPGSAA 317
>LOC_Os04g31820:12004.t02863:unspliced-genomic expressed protein| Length = 702 Score = 33.1 bits (66), Expect = 2.7 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 / +2 Query: 877 FFFFFWFCVITSQ*TLVLAK 818 FFFFFWFC+ S+ L L K Sbjct: 584 FFFFFWFCLFRSRLILGLGK 643
>LOC_Os05g47720:12005.t04207:unspliced-genomic conserved hypothetical protein| Length = 2714 Score = 32.7 bits (65), Expect = 3.7 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +1 / +2 Query: 220 RAQNAADKKDEKAVNAARRSGAEIDTTKKYNAGTNKAASSGTSLNTKRLDDD 375 R A DE+A RSG+ + T A T + + +G + + R DDD Sbjct: 302 RRATARGDGDERAARCGARSGSAREGTATRRAVTGRGSGTGAARHGARRDDD 457
>LOC_Os03g16030:12003.t01389:unspliced-genomic 17.4 kDa class I heat shock protein 3, putative, expressed| Length = 963 Score = 32.7 bits (65), Expect = 3.7 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 / +1 Query: 535 CSESPCPTRTPGSPVAS 485 CS SPCP R+P SP +S Sbjct: 538 CSPSPCPRRSPRSPTSS 588
>LOC_Os03g16020:12003.t01388:unspliced-genomic 17.4 kDa class I heat shock protein 2, putative, expressed| Length = 851 Score = 32.7 bits (65), Expect = 3.7 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 / +2 Query: 535 CSESPCPTRTPGSPVAS 485 CS SPCP R+P SP +S Sbjct: 494 CSPSPCPRRSPRSPTSS 544
>LOC_Os01g37837:12001.t06770:unspliced-genomic seryl-tRNA synthetase, putative, expressed| Length = 4198 Score = 32.7 bits (65), Expect = 3.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -1 / +3 Query: 478 SSEQVVPGSSSYPALLA*GFSSGRLKHAHGKGSQCRRRAA 359 +++ P SS+ P+LLA ++ RL+ S RRRAA Sbjct: 168 AAQAAKPSSSTLPSLLAAAAAAARLRRCSTSTSSARRRAA 287
>LOC_Os03g19600:12003.t01725:unspliced-genomic PE_PGRS family protein, putative, expressed| Length = 2044 Score = 25.4 bits (49), Expect(3) = 4.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 / -2 Query: 277 SGAEIDTTKKYNAGTNKAASSGTSLNTK 360 SGA ++T A T S+GTS T+ Sbjct: 897 SGATTESTTSSGATTESTTSTGTSTTTE 814 Score = 23.5 bits (45), Expect(3) = 4.1 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +1 / -1 Query: 4 RDNHHLRLENLSAH 45 R+ HHLRL +L+ H Sbjct: 1741 RNLHHLRLRHLALH 1700 Score = 23.1 bits (44), Expect(3) = 4.1 Identities = 6/10 (60%), Positives = 9/10 (90%) Frame = +1 / -1 Query: 685 RNHFMYHHIL 714 RNH ++HH+L Sbjct: 193 RNHHLHHHLL 164
>LOC_Os11g35274:12011.t03075:unspliced-genomic protein kinase domain containing protein, expressed| Length = 4329 Score = 32.2 bits (64), Expect = 5.1 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 / -3 Query: 651 CSCWLILNNHATEPLYVSPYSRILKLVCHMSSVRVALNMQPDML 782 C C LN H+ + V+P S +L+ CH+ R Q D + Sbjct: 4063 CHCAFRLNQHSVTLMAVTPPSDLLQAFCHLLHRRPFAQFQIDAM 3932
>LOC_Os01g73250:12001.t06607:unspliced-genomic bundle sheath cell specific protein 1, putative, expressed| Length = 1758 Score = 32.2 bits (64), Expect = 5.1 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 / +1 Query: 710 FSYSKACLSYVECKSCIKH 766 F YSK +Y+ CKSC+K+ Sbjct: 523 FIYSKILYNYIRCKSCLKY 579
>LOC_Os01g67700:12001.t06127:unspliced-genomic hypothetical protein| Length = 654 Score = 32.2 bits (64), Expect = 5.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 / +2 Query: 523 PCPTRTPGSPVASH*SSEQVVPGSSSYP 440 P PTR P SP +S + VVPG + P Sbjct: 323 PTPTRAPSSPASSPRTPPPVVPGPGAAP 406
>LOC_Os08g06600:12008.t00550:unspliced-genomic nuf2 family protein, expressed| Length = 3882 Score = 31.8 bits (63), Expect = 7.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -3 / -1 Query: 134 ISSLGLSSSQTNNHARDSAGARERGEIFWR*AERFSSRKW 15 + +G + S NN+ + GA ERGE R R+ R+W Sbjct: 342 VEVVGAAKSPPNNYKHRAGGAGERGEGEARARTRWGRRRW 223
>LOC_Os06g30390:12006.t02742:unspliced-genomic expressed protein| Length = 6851 Score = 31.8 bits (63), Expect = 7.0 Identities = 11/31 (35%), Positives = 22/31 (70%) Frame = +3 / -2 Query: 723 KLVCHMSSVRVALNMQPDMLTRVVYAWCLLL 815 +LVC +S + +A+++QP + ++V+ LLL Sbjct: 6499 RLVCRLSQLGLAISLQPSQVLQLVHVHVLLL 6407
>LOC_Os10g33260:12010.t02628:unspliced-genomic hypothetical protein| Length = 1016 Score = 31.8 bits (63), Expect = 7.0 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = -1 / -3 Query: 877 FFFFFWFCVIT 845 FFFFFWFCV++ Sbjct: 324 FFFFFWFCVLS 292
>LOC_Os07g28110:12007.t02502:unspliced-genomic cytochrome P450 51, putative| Length = 1515 Score = 31.3 bits (62), Expect = 9.7 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 / +2 Query: 541 SDCSESPCPTRTPGSPVA 488 +DC+ SPCP+ PGS +A Sbjct: 341 ADCTSSPCPSLGPGSSMA 394
>LOC_Os07g10940:12007.t00968:unspliced-genomic exo70 exocyst complex subunit family protein| Length = 9339 Score = 31.3 bits (62), Expect = 9.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 / -2 Query: 454 SSSYPALLA*GFSSGRLKHAHGKGSQCRRRAAW 356 S P+L G GR + +G+Q RRRAAW Sbjct: 4757 SPPLPSLPRSGGGEGRRRRCGQRGAQIRRRAAW 4659
>LOC_Os03g17770:12003.t01551:unspliced-genomic conserved hypothetical protein| Length = 1014 Score = 31.3 bits (62), Expect = 9.7 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -2 / +3 Query: 804 TRHKPHGLTCQAACLMQLLHSTYDKQALEYENMVIHKVVPWHGYSVS 664 TRH+PHG T AC + + + AL +++ V++ P G ++ Sbjct: 219 TRHQPHGRTVVRACQVVVAAISKRNVALPHDSFVLYDGPPKCGQKLA 359 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 323,649,359 Number of extensions: 4933591 Number of successful extensions: 20914 Number of sequences better than 10.0: 22 Length of query: 292 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 243 Effective length of database: 52,856,264 Effective search space: 12844072152 Effective search space used: 12844072152 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
