| Clone Name | FLbaf81e13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001069328.1| Oryza sativa (japonica cultivar-group) Os09g0293900 (Os09g0293900) mRNA, complete cds Length = 1548 Score = 226 bits (114), Expect = 2e-55 Identities = 228/266 (85%) Strand = Plus / Plus Query: 277 cccatcatactttgtagtttgaatcctaaattggctgagatgtgccatctcgagattgag 336 ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 451 cccatcatactctgtagtctgaatcctaaattggctgagatgtgccatctagaggttgag 510 Query: 337 ttggaggaggtcgatgaggttctgttttcagtacttggccagagttctgtgcatctctca 396 |||||||||| |||||||||| |||||||||||||||| ||||| || | ||||||||| Sbjct: 511 ttggaggaggacgatgaggttgtgttttcagtacttggtcagagctccattcatctctca 570 Query: 397 ggatattacctccggccaggcagcaggggccatgcaggggacgaagactcagaatcttat 456 ||||||||| | || || || |||| ||||||| || || || |||||||||||| Sbjct: 571 ggatattacattcgttcaagcggcagatctaatgcaggagatgacgaatcagaatcttat 630 Query: 457 ggagaggatgttggagagtctgatacagaccaagactatgaagggagtgaggacagttat 516 || ||||||||||||||||||||||| || || || | | | | |||||| ||||| ||| Sbjct: 631 ggggaggatgttggagagtctgatactgatcaggagtttaacgcgagtgacgacagctat 690 Query: 517 gaatctgacttcattgatgatggtga 542 ||||||||||| |||||||||||||| Sbjct: 691 gaatctgactttattgatgatggtga 716 Score = 79.8 bits (40), Expect = 3e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 124 atggcgttctggggcgtggaggtgaagcccggtaagccgtacacccacagctacaaccct 183 |||||||||||||| |||||||||||| | || ||||| ||||||||| || || | || Sbjct: 263 atggcgttctggggtgtggaggtgaaggctgggaagccctacacccaccgccacgatccc 322 Query: 184 tcccatggccgtctccgcatttgccagg 211 || |||||||| |||||||||||||||| Sbjct: 323 tcacatggccgcctccgcatttgccagg 350 Score = 79.8 bits (40), Expect = 3e-11 Identities = 154/192 (80%) Strand = Plus / Plus Query: 1062 agatggaaagcattccaataacataagaacattggtggatgggctagtcatagaagatct 1121 ||||||||| |||||||| || ||||||||||| | ||||| | | |||||||||| Sbjct: 1197 agatggaaaacattccaacaagataagaacattagaagatggattgatagtagaagatct 1256 Query: 1122 ttcagcaggaaaccaagatgccaaagtggcttcagagggcaacaaggtttacatcaatta 1181 ||| ||||||||| |||||| || ||||||| | |||| |||||||| ||||| || Sbjct: 1257 gtcaacaggaaacctagatgcagaaatggcttctaatggcagcaaggtttctatcaaata 1316 Query: 1182 tgttggcaagctgcaggatggaaaaactgttcattctaatgccgatgaaaagccctacaa 1241 |||||||| || |||||||| || | |||| | ||||||| | ||||||||||||||| Sbjct: 1317 tgttggcacactacaggatgggaagattgttgagtctaatgttggtgaaaagccctacaa 1376 Query: 1242 gtttaagcttgg 1253 || |||||||| Sbjct: 1377 attcaagcttgg 1388
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 168 bits (85), Expect = 4e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 277 cccatcatactttgtagtttgaatcctaaattggctgagatgtgccatctcgagattgag 336 ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 6937511 cccatcatactctgtagtctgaatcctaaattggctgagatgtgccatctagaggttgag 6937570 Query: 337 ttggaggaggtcgatgaggttctgttttcagtacttggccagagttctgtgcatctctca 396 |||||||||| |||||||||| |||||||||||||||| ||||| || | ||||||||| Sbjct: 6937571 ttggaggaggacgatgaggttgtgttttcagtacttggtcagagctccattcatctctca 6937630 Query: 397 ggatattac 405 ||||||||| Sbjct: 6937631 ggatattac 6937639 Score = 95.6 bits (48), Expect = 5e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 447 agaatcttatggagaggatgttggagagtctgatacagaccaagactatgaagggagtga 506 |||||||||||| ||||||||||||||||||||||| || || || | | | | |||||| Sbjct: 6937777 agaatcttatggggaggatgttggagagtctgatactgatcaggagtttaacgcgagtga 6937836 Query: 507 ggacagttatgaatctgacttcattgatgatggtga 542 ||||| |||||||||||||| |||||||||||||| Sbjct: 6937837 cgacagctatgaatctgactttattgatgatggtga 6937872 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Plus Query: 139 gtggaggtgaagcccggtaagccgtacacccacagctacaacccttcccatggccgtctc 198 |||||||||||| | || ||||| ||||||||| || || | || || |||||||| ||| Sbjct: 6936967 gtggaggtgaaggctgggaagccctacacccaccgccacgatccctcacatggccgcctc 6937026 Query: 199 cgcatttgccagg 211 ||||||||||||| Sbjct: 6937027 cgcatttgccagg 6937039 Score = 50.1 bits (25), Expect = 0.028 Identities = 67/81 (82%) Strand = Plus / Plus Query: 1174 atcaattatgttggcaagctgcaggatggaaaaactgttcattctaatgccgatgaaaag 1233 ||||| |||||||||| || |||||||| || | |||| | ||||||| | ||||||| Sbjct: 6939399 atcaaatatgttggcacactacaggatgggaagattgttgagtctaatgttggtgaaaag 6939458 Query: 1234 ccctacaagtttaagcttggt 1254 |||||||| || ||||||||| Sbjct: 6939459 ccctacaaattcaagcttggt 6939479 Score = 42.1 bits (21), Expect = 6.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1062 agatggaaagcattccaataacataagaacatt 1094 ||||||||| |||||||| || ||||||||||| Sbjct: 6939045 agatggaaaacattccaacaagataagaacatt 6939077
>dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01 Length = 160643 Score = 168 bits (85), Expect = 4e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 277 cccatcatactttgtagtttgaatcctaaattggctgagatgtgccatctcgagattgag 336 ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 8682 cccatcatactctgtagtctgaatcctaaattggctgagatgtgccatctagaggttgag 8741 Query: 337 ttggaggaggtcgatgaggttctgttttcagtacttggccagagttctgtgcatctctca 396 |||||||||| |||||||||| |||||||||||||||| ||||| || | ||||||||| Sbjct: 8742 ttggaggaggacgatgaggttgtgttttcagtacttggtcagagctccattcatctctca 8801 Query: 397 ggatattac 405 ||||||||| Sbjct: 8802 ggatattac 8810 Score = 95.6 bits (48), Expect = 5e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 447 agaatcttatggagaggatgttggagagtctgatacagaccaagactatgaagggagtga 506 |||||||||||| ||||||||||||||||||||||| || || || | | | | |||||| Sbjct: 8948 agaatcttatggggaggatgttggagagtctgatactgatcaggagtttaacgcgagtga 9007 Query: 507 ggacagttatgaatctgacttcattgatgatggtga 542 ||||| |||||||||||||| |||||||||||||| Sbjct: 9008 cgacagctatgaatctgactttattgatgatggtga 9043 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Plus Query: 139 gtggaggtgaagcccggtaagccgtacacccacagctacaacccttcccatggccgtctc 198 |||||||||||| | || ||||| ||||||||| || || | || || |||||||| ||| Sbjct: 8138 gtggaggtgaaggctgggaagccctacacccaccgccacgatccctcacatggccgcctc 8197 Query: 199 cgcatttgccagg 211 ||||||||||||| Sbjct: 8198 cgcatttgccagg 8210 Score = 50.1 bits (25), Expect = 0.028 Identities = 67/81 (82%) Strand = Plus / Plus Query: 1174 atcaattatgttggcaagctgcaggatggaaaaactgttcattctaatgccgatgaaaag 1233 ||||| |||||||||| || |||||||| || | |||| | ||||||| | ||||||| Sbjct: 10570 atcaaatatgttggcacactacaggatgggaagattgttgagtctaatgttggtgaaaag 10629 Query: 1234 ccctacaagtttaagcttggt 1254 |||||||| || ||||||||| Sbjct: 10630 ccctacaaattcaagcttggt 10650 Score = 42.1 bits (21), Expect = 6.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1062 agatggaaagcattccaataacataagaacatt 1094 ||||||||| |||||||| || ||||||||||| Sbjct: 10216 agatggaaaacattccaacaagataagaacatt 10248
>dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1043F11 Length = 167137 Score = 168 bits (85), Expect = 4e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 277 cccatcatactttgtagtttgaatcctaaattggctgagatgtgccatctcgagattgag 336 ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 165406 cccatcatactctgtagtctgaatcctaaattggctgagatgtgccatctagaggttgag 165465 Query: 337 ttggaggaggtcgatgaggttctgttttcagtacttggccagagttctgtgcatctctca 396 |||||||||| |||||||||| |||||||||||||||| ||||| || | ||||||||| Sbjct: 165466 ttggaggaggacgatgaggttgtgttttcagtacttggtcagagctccattcatctctca 165525 Query: 397 ggatattac 405 ||||||||| Sbjct: 165526 ggatattac 165534 Score = 95.6 bits (48), Expect = 5e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 447 agaatcttatggagaggatgttggagagtctgatacagaccaagactatgaagggagtga 506 |||||||||||| ||||||||||||||||||||||| || || || | | | | |||||| Sbjct: 165672 agaatcttatggggaggatgttggagagtctgatactgatcaggagtttaacgcgagtga 165731 Query: 507 ggacagttatgaatctgacttcattgatgatggtga 542 ||||| |||||||||||||| |||||||||||||| Sbjct: 165732 cgacagctatgaatctgactttattgatgatggtga 165767 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Plus Query: 139 gtggaggtgaagcccggtaagccgtacacccacagctacaacccttcccatggccgtctc 198 |||||||||||| | || ||||| ||||||||| || || | || || |||||||| ||| Sbjct: 164862 gtggaggtgaaggctgggaagccctacacccaccgccacgatccctcacatggccgcctc 164921 Query: 199 cgcatttgccagg 211 ||||||||||||| Sbjct: 164922 cgcatttgccagg 164934 Score = 42.1 bits (21), Expect = 6.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1062 agatggaaagcattccaataacataagaacatt 1094 ||||||||| |||||||| || ||||||||||| Sbjct: 166940 agatggaaaacattccaacaagataagaacatt 166972
>ref|NM_001059445.1| Oryza sativa (japonica cultivar-group) Os04g0446500 (Os04g0446500) mRNA, complete cds Length = 2087 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 128 cgttctggggcgtggaggtgaagcccggtaagccgtacacccaca 172 |||| ||||||| ||||||||||||||| ||||| |||||||||| Sbjct: 189 cgttttggggcgcggaggtgaagcccgggaagccctacacccaca 233 Score = 44.1 bits (22), Expect = 1.7 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1293 tggtatgcgtgttggcgagaagaggaggctaaccatccctccatca 1338 ||||||||||||||| || || |||||||| || ||||| |||||| Sbjct: 1630 tggtatgcgtgttggggacaaaaggaggctcacgatcccaccatca 1675
>dbj|AK103814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147C19, full insert sequence Length = 2087 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 128 cgttctggggcgtggaggtgaagcccggtaagccgtacacccaca 172 |||| ||||||| ||||||||||||||| ||||| |||||||||| Sbjct: 189 cgttttggggcgcggaggtgaagcccgggaagccctacacccaca 233 Score = 44.1 bits (22), Expect = 1.7 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1293 tggtatgcgtgttggcgagaagaggaggctaaccatccctccatca 1338 ||||||||||||||| || || |||||||| || ||||| |||||| Sbjct: 1630 tggtatgcgtgttggggacaaaaggaggctcacgatcccaccatca 1675
>dbj|AK073743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067L09, full insert sequence Length = 1275 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 128 cgttctggggcgtggaggtgaagcccggtaagccgtacacccaca 172 |||| ||||||| ||||||||||||||| ||||| |||||||||| Sbjct: 191 cgttttggggcgcggaggtgaagcccgggaagccctacacccaca 235
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 50.1 bits (25), Expect = 0.028 Identities = 34/37 (91%) Strand = Plus / Plus Query: 136 ggcgtggaggtgaagcccggtaagccgtacacccaca 172 |||| ||||||||||||||| ||||| |||||||||| Sbjct: 22234255 ggcgcggaggtgaagcccgggaagccctacacccaca 22234291 Score = 42.1 bits (21), Expect = 6.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1294 ggtatgcgtgttggcgagaagaggaggctaaccatccctccatca 1338 |||||||||||||| || || |||||||| || ||||| |||||| Sbjct: 22237301 ggtatgcgtgttggggacaaaaggaggctcacgatcccaccatca 22237345
>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence Length = 118959 Score = 50.1 bits (25), Expect = 0.028 Identities = 34/37 (91%) Strand = Plus / Plus Query: 136 ggcgtggaggtgaagcccggtaagccgtacacccaca 172 |||| ||||||||||||||| ||||| |||||||||| Sbjct: 104116 ggcgcggaggtgaagcccgggaagccctacacccaca 104152 Score = 42.1 bits (21), Expect = 6.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1294 ggtatgcgtgttggcgagaagaggaggctaaccatccctccatca 1338 |||||||||||||| || || |||||||| || ||||| |||||| Sbjct: 107162 ggtatgcgtgttggggacaaaaggaggctcacgatcccaccatca 107206
>gb|AF019413.1|HSMHCT8S22 Homo sapiens HLA class III region containing tenascin X (tenascin-X) gene, partial cds; cytochrome P450 21-hydroxylase (CYP21B), complement component C4 (C4B) G11, helicase (SKI2W), RD, complement factor B (Bf), and complement component C2 (C2) genes, complete cds Length = 109646 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Minus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 45347 agtaatagtagcaggaaaagaaaaagtg 45320
>emb|AL662849.8| Human DNA sequence from clone XXbac-116I9 on chromosome 6 contains the C2 gene for complement component 2, the Bf gene for B-factor, properdin, the RDBP gene for RD RNA-binding protein, the SKIV2L gene for superkiller viralicidic activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3 homolog Z (C. elegans), the STK19 gene for serine/threonine kinase 19, the C4A gene for complement component 4B, the 3' end of the CYP21A2 gene for cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2 and four CpG islands, complete sequence Length = 88459 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 66371 agtaatagtagcaggaaaagaaaaagtg 66398
>emb|CR753845.11| Human DNA sequence from clone DADB-112B14 on chromosome 6, complete sequence Length = 96090 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 25329 agtaatagtagcaggaaaagaaaaagtg 25356
>emb|AL844853.23| Human DNA sequence from clone DAQB-331I12 on chromosome 6 Contains the NEU1 gene for sialidase 1 (lysosomal sialidase), the C6orf29 gene for chromosome 6 open reading frame 29, the BAT8 gene for HLA-B associated transcript 8, a novel transcript DAQB-331I12.5, the ZBTB12 gene (previously C6orf46) for zinc finger and BTB domain containing 12, the C2 gene for complement component 2, the Bf gene for B-factor, properdin, the RDBP gene for RD RNA binding protein, the SKIV2L gene for superkiller viralicidic activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3 homolog Z (C. elegans), the STK19 gene for serine/threonine kinase 19, the 5' end of the C4A gene for complement component 4A and 8 CpG isalnds, complete sequence Length = 153464 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 134328 agtaatagtagcaggaaaagaaaaagtg 134355
>emb|AL645922.11| Human DNA sequence from clone XXbac-116M5 on chromosome 6 contains the C2 gene for complement component 2 (C2, CO2), the Bf gene for B-factor, properdin (Bf, GBG, CFAB, PBF2), the RDBP gene for RD RNA-binding protein (RDBP, RD, RDP, D6S45, NELF-E), the SKIV2L gene for superkiller viralicidic activity 2-like (S. cerevisiae) (SKIV2L, HLP, SKI2, DDX13, SKI2W, SKIV2), the DOM3Z gene for dom-3 homolog Z (C. elegans) (DOM3Z, NG6, DOM3L), the STK19 gene for serine/threonine kinase 19 (STK19, G11, RP1, D6S60, D6S60E, HLA-RP1), the C4A gene for complement component 4A (C4A, C4S, CO4), a cytochrome P450, subfamily XXIA (steroid 21-hydroxylase), polypeptide 1 pseudogene (CYP21A1P), a tenascin XA pseudogene (TNXA, XA, XB, TNX, HXBL, D6S103E), a serine/threonine kinase 19 (STK19, G11, RP1, D6S60, D6S60E, HLA-RP1) pseudogene, the C4B gene for complement component 4B (C4B, C4F, CO4), the CYP21A2 gene for cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2 (CYP21A2, CAH1, CPS1, CA21H, CYP21, CYP21B, P450c21B), the 3' end of the TNXB gene for tenascin XB (TNXB, XB, TNX, XBS, HXBL, TENX, TNXB1, TNXB2, TNXBS) and four CpG islands, complete sequence Length = 180559 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 76470 agtaatagtagcaggaaaagaaaaagtg 76497
>emb|AL049547.10|HSDJ34F7 Human DNA sequence from clone RP1-34F7 on chromosome 6p21.2-21.33 Contains the 3' end of the gene for CREB-RP (G13), the gene for tenascin XB and XA, the CYP21A2 gene for cytochrome P450, subfamily XXIA (steroid 21-hydroxylase), polypeptide 2 (CYP21, P450c21B), the C4A gene for complement component 4A, the gene for RP MHC class III complement protein (G11), the DOM3Z gene for DOM-3 (C. elegans) homolog Z, the SKIV2L gene for superkiller viralicidic activity 2 (S. cerevisiae homolog)-like (SKI2W) and the gene for RD (RDBP). Contains ESTs, STSs, GSSs and five putative CpG islands, complete sequence Length = 129811 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Minus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 105774 agtaatagtagcaggaaaagaaaaagtg 105747
>emb|CR759782.7| Human DNA sequence from clone DAMC-178C20 on chromosome 6, complete sequence Length = 79825 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 77979 agtaatagtagcaggaaaagaaaaagtg 78006
>gb|L26261.1|HUMMHRP1B Human MHC class III HLA-RP1 gene Length = 12120 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 10119 agtaatagtagcaggaaaagaaaaagtg 10146
>emb|BX679671.7| Human DNA sequence from clone DASS-307J8 on chromosome 6, complete sequence Length = 96335 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 8095 agtaatagtagcaggaaaagaaaaagtg 8122
>emb|BX936373.1| Human DNA sequence from clone DASS-307J8 on chromosome 6, complete sequence Length = 36539 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 8095 agtaatagtagcaggaaaagaaaaagtg 8122
>gb|U24578.1|HSU24578 Human RP1 and complement C4B precursor (C4B) genes, partial cds Length = 17488 Score = 48.1 bits (24), Expect = 0.11 Identities = 27/28 (96%) Strand = Plus / Plus Query: 910 agtaatagtggcaggaaaagaaaaagtg 937 ||||||||| |||||||||||||||||| Sbjct: 1287 agtaatagtagcaggaaaagaaaaagtg 1314
>emb|CR855182.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140O07, complete sequence Length = 78789 Score = 46.1 bits (23), Expect = 0.44 Identities = 29/31 (93%) Strand = Plus / Plus Query: 142 gaggtgaagcccggtaagccgtacacccaca 172 |||||||||||||| ||||| |||||||||| Sbjct: 67880 gaggtgaagcccgggaagccctacacccaca 67910 Score = 42.1 bits (21), Expect = 6.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1294 ggtatgcgtgttggcgagaagaggaggctaaccatccctccatca 1338 |||||||||||||| || || |||||||| || ||||| |||||| Sbjct: 70935 ggtatgcgtgttggggacaaaaggaggctcacgatcccaccatca 70979
>ref|XM_001209571.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_06885) mRNA, complete cds Length = 1671 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ctgcgccgctccgcagacggcgg 62 ||||||||||||||||||||||| Sbjct: 405 ctgcgccgctccgcagacggcgg 383
>ref|NM_129830.2| Arabidopsis thaliana triacylglycerol lipase (AT2G42690) mRNA, complete cds Length = 1389 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 561 tttgatagtgacagtgaagatgaaga 586
>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence Length = 219936 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 439 gaagactcagaatcttatggagagga 464 |||||||||||||||| ||||||||| Sbjct: 188483 gaagactcagaatcttctggagagga 188508
>gb|AY079356.1| Arabidopsis thaliana putative lipase (At2g42690) mRNA, complete cds Length = 1270 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 526 tttgatagtgacagtgaagatgaaga 551
>gb|AY050998.1| Arabidopsis thaliana putative lipase (At2g42690) mRNA, complete cds Length = 1348 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 561 tttgatagtgacagtgaagatgaaga 586
>gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 map mi551, complete sequence Length = 96685 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 8670 tttgatagtgacagtgaagatgaaga 8695
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 104589 tttgatagtgacagtgaagatgaaga 104614
>emb|BX537118.12| Zebrafish DNA sequence from clone CH211-202N8, complete sequence Length = 197161 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 720 atcaaagcctgctgtcaggcgcaaac 745 |||||| ||||||||||||||||||| Sbjct: 83007 atcaaaacctgctgtcaggcgcaaac 82982
>emb|BX821625.1|CNS0A99U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL59ZD12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1270 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 757 tttgatagtgccagtgaagatgaaga 782 |||||||||| ||||||||||||||| Sbjct: 540 tttgatagtgacagtgaagatgaaga 565
>emb|BX824563.1|CNS0A6RT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1147 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 704 agattgctgattctccatcaaa 725 |||||||||||||||||||||| Sbjct: 986 agattgctgattctccatcaaa 965
>gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome 8, complete sequence Length = 249808 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 tggaggaggtcgatgaggttct 359 |||||||||||||||||||||| Sbjct: 94435 tggaggaggtcgatgaggttct 94456
>gb|AC164421.3| Mus musculus chromosome 5, clone RP24-257M14, complete sequence Length = 154470 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 439 gaagactcagaatcttatggagagga 464 |||||||||||||||| ||||||||| Sbjct: 114048 gaagactcagaatcttctggagagga 114023
>emb|AL772300.10| Zebrafish DNA sequence from clone CH211-165G14, complete sequence Length = 155951 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 720 atcaaagcctgctgtcaggcgcaaac 745 ||||||||||| |||||||||||||| Sbjct: 148774 atcaaagcctgttgtcaggcgcaaac 148799
>gb|AC192555.2| Gallus gallus BAC clone CH261-77C15 from chromosome z, complete sequence Length = 188681 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 919 ggcaggaaaagaaaaagtgatgaaa 943 |||||||||| |||||||||||||| Sbjct: 68997 ggcaggaaaaaaaaaagtgatgaaa 69021
>ref|XM_001232376.1| PREDICTED: Gallus gallus hypothetical protein LOC769949 (LOC769949), mRNA Length = 753 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 29 cgcccccgtccctgcgccgctccgc 53 |||||||||||| |||||||||||| Sbjct: 581 cgcccccgtcccagcgccgctccgc 557
>ref|XM_001232722.1| PREDICTED: Gallus gallus dopey family member 2 (DOPEY2), mRNA Length = 9835 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 528 cattgatgatggtgacactgaagta 552 |||||||||||||| |||||||||| Sbjct: 5613 cattgatgatggtgccactgaagta 5589
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 gttgacagctccgctgacaag 705 ||||||||||||||||||||| Sbjct: 7405381 gttgacagctccgctgacaag 7405361
>gb|AC183680.3| Pan troglodytes BAC clone CH251-425K14 from chromosome 9, complete sequence Length = 163619 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1058 cagaagatggaaagcattcca 1078 ||||||||||||||||||||| Sbjct: 40591 cagaagatggaaagcattcca 40571
>gb|AC113013.15| Mus musculus chromosome 7, clone RP23-174K7, complete sequence Length = 235823 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1053 ggaggcagaagatggaaagca 1073 ||||||||||||||||||||| Sbjct: 215302 ggaggcagaagatggaaagca 215282
>gb|AC150401.3| Branchiostoma floridae clone CH302-30M10, complete sequence Length = 138773 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1378 aaagattcaacaatcatttat 1398 ||||||||||||||||||||| Sbjct: 18314 aaagattcaacaatcatttat 18294
>gb|M93301.1|RATROAT08 Rattus norvegicus ornithine aminotransferase (rOAT) gene, exon 11 Length = 763 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 595 atatgctcaacccccaatcatctta 619 ||||||||||||| ||||||||||| Sbjct: 616 atatgctcaaccctcaatcatctta 592
>ref|NM_022521.2| Rattus norvegicus ornithine aminotransferase (Oat), mRNA gb|BC061551.1| Rattus norvegicus ornithine aminotransferase, mRNA (cDNA clone MGC:72829 IMAGE:6890520), complete cds Length = 2181 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 595 atatgctcaacccccaatcatctta 619 ||||||||||||| ||||||||||| Sbjct: 1840 atatgctcaaccctcaatcatctta 1816
>ref|XM_655604.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3092.2), mRNA Length = 4908 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 948 tcaggatcctgcatctccaat 968 ||||||||||||||||||||| Sbjct: 1830 tcaggatcctgcatctccaat 1850
>gb|BC041296.1| Xenopus laevis similar to histone deacetylase 1, mRNA (cDNA clone MGC:53583 IMAGE:4683530), complete cds Length = 2227 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 cagtggtgcaatgcattgtgg 265 ||||||||||||||||||||| Sbjct: 1699 cagtggtgcaatgcattgtgg 1719
>gb|AC153517.8| Mus musculus 10 BAC RP23-22E18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203981 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 571 tctaattctatggatgatggt 591 ||||||||||||||||||||| Sbjct: 130315 tctaattctatggatgatggt 130295
>gb|AC102076.9| Mus musculus chromosome 7, clone RP23-401P12, complete sequence Length = 199219 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1053 ggaggcagaagatggaaagca 1073 ||||||||||||||||||||| Sbjct: 17971 ggaggcagaagatggaaagca 17951
>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence Length = 172179 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 917 gtggcaggaaaagaaaaagtg 937 ||||||||||||||||||||| Sbjct: 18597 gtggcaggaaaagaaaaagtg 18577
>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence Length = 199051 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 917 gtggcaggaaaagaaaaagtg 937 ||||||||||||||||||||| Sbjct: 156290 gtggcaggaaaagaaaaagtg 156270
>gb|AC010557.4| Drosophila melanogaster 3L BAC RP98-9E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169425 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 685 gttgacagctccgctgacaag 705 ||||||||||||||||||||| Sbjct: 79867 gttgacagctccgctgacaag 79847
>emb|AL049798.7|HSJ797M17 Human DNA sequence from clone RP4-797M17 on chromosome 1q22-24.3 Contains the DPT gene for dermatopontin, complete sequence Length = 74822 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1058 cagaagatggaaagcattcca 1078 ||||||||||||||||||||| Sbjct: 69350 cagaagatggaaagcattcca 69330
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 912 taatagtggcaggaaaagaaaaagt 936 ||||| ||||||||||||||||||| Sbjct: 129150 taataatggcaggaaaagaaaaagt 129174
>emb|AL030997.1|HS1189K21 Human DNA sequence from clone RP5-1189K21 on chromosome Xq26.3-27.3 Contains an NADH dehydrogenase 1 (MTND1) pseudogene, an NADH dehydrogenase 2 (MTND2) pseudogene and the parts of two novel genes, complete sequence Length = 100625 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 758 ttgatagtgccagtgaagatgaaga 782 ||||| ||||||||||||||||||| Sbjct: 62909 ttgatggtgccagtgaagatgaaga 62885
>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete sequence Length = 234055 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1051 gtggaggcagaagatggaaag 1071 ||||||||||||||||||||| Sbjct: 65076 gtggaggcagaagatggaaag 65096
>gb|AC010987.9| Homo sapiens BAC clone RP11-553M15 from 2, complete sequence Length = 193319 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 923 ggaaaagaaaaagtgatgaaa 943 ||||||||||||||||||||| Sbjct: 149331 ggaaaagaaaaagtgatgaaa 149351
>emb|CR407293.1| Gallus gallus finished cDNA, clone ChEST604o7 Length = 753 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 cgcccccgtccctgcgccgctccgc 53 |||||||||||| |||||||||||| Sbjct: 173 cgcccccgtcccagcgccgctccgc 197
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 702 caagattgctgattctccatc 722 ||||||||||||||||||||| Sbjct: 28055 caagattgctgattctccatc 28035
>emb|X81979.1|LHPLH3 L.helveticus plasmid pLH3 DNA (2 ORFs) Length = 3414 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1137 agatgccaaagtggcttcaga 1157 ||||||||||||||||||||| Sbjct: 978 agatgccaaagtggcttcaga 998
>gb|AC123759.7| Mus musculus chromosome 3, clone RP24-303I14, complete sequence Length = 189387 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 tgaatctgacttcattgatgatggt 540 ||||||||||||||||||| ||||| Sbjct: 78475 tgaatctgacttcattgataatggt 78499
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 cctgctcgtaaggttaaaaaa 657 ||||||||||||||||||||| Sbjct: 537093 cctgctcgtaaggttaaaaaa 537073
>emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chromosome X, complete sequence Length = 234900 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 caagactatgaagggagtgag 507 ||||||||||||||||||||| Sbjct: 122457 caagactatgaagggagtgag 122477
>gb|M11842.1|RATOTA Rat ornithine aminotransferase mRNA, complete cds Length = 1938 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 595 atatgctcaacccccaatcatctta 619 ||||||||||||| ||||||||||| Sbjct: 1780 atatgctcaaccctcaatcatctta 1756 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 328,448,518 Number of extensions: 18054004 Number of successful extensions: 396596 Number of sequences better than 10.0: 62 Number of HSP's gapped: 396592 Number of HSP's successfully gapped: 82 Length of query: 1798 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1775 Effective length of database: 18,503,978,556 Effective search space: 32844561936900 Effective search space used: 32844561936900 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)