ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf72d16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001057304.1| Oryza sativa (japonica cultivar-group) Os03g0646400 (Os03g0646400) mRNA, complete cds Length = 670 Score = 373 bits (188), Expect = e-100 Identities = 362/420 (86%) Strand = Plus / Plus Query: 117 cggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggccccgctgttcg 176 |||| |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| Sbjct: 34 cggccgacgcggtggtggcgctgctctccttgaccatggcggtggcggcgccgctgttcg 93 Query: 177 actcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggacatccaccggt 236 || |||||||||| ||||| ||||||||| |||| ||||||||||| | ||||||||||| Sbjct: 94 acgcccaggtcgtcctccctcgcggcctctacccggcgccgctcgtcggcatccaccggt 153 Query: 237 ggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttcttcctcggct 296 ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 154 ggttcgccgccgagttcggccactacctcgtcgccgacccgccgcccttcttccgcggcc 213 Query: 297 tcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcc 356 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 214 tcgtttggctcgacctcgccttcctctggccggtctgcgtcgccaacctctacggcatcc 273 Query: 357 tcgcgggccgccgctggtcggccaccacctccctcatggcgggggtctacatgctcacct 416 ||||| |||||| |||||| ||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 274 tcgcgcgccgcccctggtccgccgccacctccatcatggcgggcgtctacgtgctcacct 333 Query: 417 acttgtccgccatactcggtgacatgttgggctcaggaaaagcaacgccgagactgcttc 476 || |||| || || |||| || ||| |||||||||||| | |||| |||| ||| ||| Sbjct: 334 acatgtctgcaatcttcggagagatgctgggctcaggaagaacaacaccgaagctgattc 393 Query: 477 agctgtatgctccgttcatcgtgattgctgtaactgcagttttgcgtggcctctgctcat 536 ||||||| | ||| ||| || |||||||||||||||| ||||||| ||||||||| Sbjct: 394 agctgtacgttccattcgctctggctgctgtaactgcagttctgcgtggtttctgctcat 453
>dbj|AK108338.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A09, full insert sequence Length = 1079 Score = 373 bits (188), Expect = e-100 Identities = 362/420 (86%) Strand = Plus / Plus Query: 117 cggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggccccgctgttcg 176 |||| |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| Sbjct: 367 cggccgacgcggtggtggcgctgctctccttgaccatggcggtggcggcgccgctgttcg 426 Query: 177 actcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggacatccaccggt 236 || |||||||||| ||||| ||||||||| |||| ||||||||||| | ||||||||||| Sbjct: 427 acgcccaggtcgtcctccctcgcggcctctacccggcgccgctcgtcggcatccaccggt 486 Query: 237 ggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttcttcctcggct 296 ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 487 ggttcgccgccgagttcggccactacctcgtcgccgacccgccgcccttcttccgcggcc 546 Query: 297 tcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcc 356 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 547 tcgtttggctcgacctcgccttcctctggccggtctgcgtcgccaacctctacggcatcc 606 Query: 357 tcgcgggccgccgctggtcggccaccacctccctcatggcgggggtctacatgctcacct 416 ||||| |||||| |||||| ||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 607 tcgcgcgccgcccctggtccgccgccacctccatcatggcgggcgtctacgtgctcacct 666 Query: 417 acttgtccgccatactcggtgacatgttgggctcaggaaaagcaacgccgagactgcttc 476 || |||| || || |||| || ||| |||||||||||| | |||| |||| ||| ||| Sbjct: 667 acatgtctgcaatcttcggagagatgctgggctcaggaagaacaacaccgaagctgattc 726 Query: 477 agctgtatgctccgttcatcgtgattgctgtaactgcagttttgcgtggcctctgctcat 536 ||||||| | ||| ||| || |||||||||||||||| ||||||| ||||||||| Sbjct: 727 agctgtacgttccattcgctctggctgctgtaactgcagttctgcgtggtttctgctcat 786
>dbj|AK108306.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F06, full insert sequence Length = 671 Score = 373 bits (188), Expect = e-100 Identities = 362/420 (86%) Strand = Plus / Plus Query: 117 cggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggccccgctgttcg 176 |||| |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| Sbjct: 35 cggccgacgcggtggtggcgctgctctccttgaccatggcggtggcggcgccgctgttcg 94 Query: 177 actcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggacatccaccggt 236 || |||||||||| ||||| ||||||||| |||| ||||||||||| | ||||||||||| Sbjct: 95 acgcccaggtcgtcctccctcgcggcctctacccggcgccgctcgtcggcatccaccggt 154 Query: 237 ggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttcttcctcggct 296 ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 155 ggttcgccgccgagttcggccactacctcgtcgccgacccgccgcccttcttccgcggcc 214 Query: 297 tcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcc 356 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 215 tcgtttggctcgacctcgccttcctctggccggtctgcgtcgccaacctctacggcatcc 274 Query: 357 tcgcgggccgccgctggtcggccaccacctccctcatggcgggggtctacatgctcacct 416 ||||| |||||| |||||| ||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 275 tcgcgcgccgcccctggtccgccgccacctccatcatggcgggcgtctacgtgctcacct 334 Query: 417 acttgtccgccatactcggtgacatgttgggctcaggaaaagcaacgccgagactgcttc 476 || |||| || || |||| || ||| |||||||||||| | |||| |||| ||| ||| Sbjct: 335 acatgtctgcaatcttcggagagatgctgggctcaggaagaacaacaccgaagctgattc 394 Query: 477 agctgtatgctccgttcatcgtgattgctgtaactgcagttttgcgtggcctctgctcat 536 ||||||| | ||| ||| || |||||||||||||||| ||||||| ||||||||| Sbjct: 395 agctgtacgttccattcgctctggctgctgtaactgcagttctgcgtggtttctgctcat 454
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 345 bits (174), Expect = 1e-91 Identities = 270/302 (89%) Strand = Plus / Minus Query: 117 cggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggccccgctgttcg 176 |||| |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| Sbjct: 24815248 cggccgacgcggtggtggcgctgctctccttgaccatggcggtggcggcgccgctgttcg 24815189 Query: 177 actcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggacatccaccggt 236 || |||||||||| ||||| ||||||||| |||| ||||||||||| | ||||||||||| Sbjct: 24815188 acgcccaggtcgtcctccctcgcggcctctacccggcgccgctcgtcggcatccaccggt 24815129 Query: 237 ggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttcttcctcggct 296 ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 24815128 ggttcgccgccgagttcggccactacctcgtcgccgacccgccgcccttcttccgcggcc 24815069 Query: 297 tcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcc 356 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 24815068 tcgtttggctcgacctcgccttcctctggccggtctgcgtcgccaacctctacggcatcc 24815009 Query: 357 tcgcgggccgccgctggtcggccaccacctccctcatggcgggggtctacatgctcacct 416 ||||| |||||| |||||| ||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 24815008 tcgcgcgccgcccctggtccgccgccacctccatcatggcgggcgtctacgtgctcacct 24814949 Query: 417 ac 418 || Sbjct: 24814948 ac 24814947 Score = 46.1 bits (23), Expect = 0.18 Identities = 32/35 (91%) Strand = Plus / Minus Query: 502 tgctgtaactgcagttttgcgtggcctctgctcat 536 |||||||||||||||| ||||||| ||||||||| Sbjct: 24814578 tgctgtaactgcagttctgcgtggtttctgctcat 24814544
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 345 bits (174), Expect = 1e-91 Identities = 270/302 (89%) Strand = Plus / Minus Query: 117 cggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggccccgctgttcg 176 |||| |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| Sbjct: 10876 cggccgacgcggtggtggcgctgctctccttgaccatggcggtggcggcgccgctgttcg 10817 Query: 177 actcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggacatccaccggt 236 || |||||||||| ||||| ||||||||| |||| ||||||||||| | ||||||||||| Sbjct: 10816 acgcccaggtcgtcctccctcgcggcctctacccggcgccgctcgtcggcatccaccggt 10757 Query: 237 ggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttcttcctcggct 296 ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 10756 ggttcgccgccgagttcggccactacctcgtcgccgacccgccgcccttcttccgcggcc 10697 Query: 297 tcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcc 356 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 10696 tcgtttggctcgacctcgccttcctctggccggtctgcgtcgccaacctctacggcatcc 10637 Query: 357 tcgcgggccgccgctggtcggccaccacctccctcatggcgggggtctacatgctcacct 416 ||||| |||||| |||||| ||| |||||||| |||||||||| |||||| ||||||||| Sbjct: 10636 tcgcgcgccgcccctggtccgccgccacctccatcatggcgggcgtctacgtgctcacct 10577 Query: 417 ac 418 || Sbjct: 10576 ac 10575 Score = 46.1 bits (23), Expect = 0.18 Identities = 32/35 (91%) Strand = Plus / Minus Query: 502 tgctgtaactgcagttttgcgtggcctctgctcat 536 |||||||||||||||| ||||||| ||||||||| Sbjct: 10206 tgctgtaactgcagttctgcgtggtttctgctcat 10172
>ref|NM_001066105.1| Oryza sativa (japonica cultivar-group) Os07g0458700 (Os07g0458700) mRNA, complete cds Length = 903 Score = 117 bits (59), Expect = 6e-23 Identities = 230/287 (80%) Strand = Plus / Plus Query: 107 gtctccgcgacggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggcc 166 ||||| ||| ||||||||| || ||| | |||||||||||| | ||||||||||||| Sbjct: 76 gtctcggcggcggcggacgcggcggtggtgctcttctcgctcacggtggcggtggcggcg 135 Query: 167 ccgctgttcgactcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggac 226 |||||| ||||| | ||| ||||||||||||| |||| ||| ||||||||||| | Sbjct: 136 ccgctgatcgacgcgcagtccgtgctcccgcgccacctcttcccggcgccgctcgtctcc 195 Query: 227 atccaccggtggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttc 286 || | ||||||| | || || ||||||| |||||||||| ||| ||| ||| ||| Sbjct: 196 ctcaagcggtggtacgcccgcgagttcggcgactacctcgtggcccgccccccgggcttc 255 Query: 287 ttcctcggcttcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctc 346 ||| || ||||||||||||| || |||||||| |||||| || | |||||| |||| Sbjct: 256 ctccgggggctcgtctggctcgagctcgccttcctctggccgctcgccctcgccaccctc 315 Query: 347 tacggcatcctcgcgggccgccgctggtcggccaccacctccctcat 393 |||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 316 tacggcatcctcgcccgccgccgctgggccgccaccacctccctcat 362
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 117 bits (59), Expect = 6e-23 Identities = 230/287 (80%) Strand = Plus / Plus Query: 107 gtctccgcgacggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggcc 166 ||||| ||| ||||||||| || ||| | |||||||||||| | ||||||||||||| Sbjct: 15937410 gtctcggcggcggcggacgcggcggtggtgctcttctcgctcacggtggcggtggcggcg 15937469 Query: 167 ccgctgttcgactcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggac 226 |||||| ||||| | ||| ||||||||||||| |||| ||| ||||||||||| | Sbjct: 15937470 ccgctgatcgacgcgcagtccgtgctcccgcgccacctcttcccggcgccgctcgtctcc 15937529 Query: 227 atccaccggtggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttc 286 || | ||||||| | || || ||||||| |||||||||| ||| ||| ||| ||| Sbjct: 15937530 ctcaagcggtggtacgcccgcgagttcggcgactacctcgtggcccgccccccgggcttc 15937589 Query: 287 ttcctcggcttcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctc 346 ||| || ||||||||||||| || |||||||| |||||| || | |||||| |||| Sbjct: 15937590 ctccgggggctcgtctggctcgagctcgccttcctctggccgctcgccctcgccaccctc 15937649 Query: 347 tacggcatcctcgcgggccgccgctggtcggccaccacctccctcat 393 |||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 15937650 tacggcatcctcgcccgccgccgctgggccgccaccacctccctcat 15937696
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 117 bits (59), Expect = 6e-23 Identities = 230/287 (80%) Strand = Plus / Plus Query: 107 gtctccgcgacggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggcc 166 ||||| ||| ||||||||| || ||| | |||||||||||| | ||||||||||||| Sbjct: 176924 gtctcggcggcggcggacgcggcggtggtgctcttctcgctcacggtggcggtggcggcg 176983 Query: 167 ccgctgttcgactcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggac 226 |||||| ||||| | ||| ||||||||||||| |||| ||| ||||||||||| | Sbjct: 176984 ccgctgatcgacgcgcagtccgtgctcccgcgccacctcttcccggcgccgctcgtctcc 177043 Query: 227 atccaccggtggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttc 286 || | ||||||| | || || ||||||| |||||||||| ||| ||| ||| ||| Sbjct: 177044 ctcaagcggtggtacgcccgcgagttcggcgactacctcgtggcccgccccccgggcttc 177103 Query: 287 ttcctcggcttcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctc 346 ||| || ||||||||||||| || |||||||| |||||| || | |||||| |||| Sbjct: 177104 ctccgggggctcgtctggctcgagctcgccttcctctggccgctcgccctcgccaccctc 177163 Query: 347 tacggcatcctcgcgggccgccgctggtcggccaccacctccctcat 393 |||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 177164 tacggcatcctcgcccgccgccgctgggccgccaccacctccctcat 177210
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 117 bits (59), Expect = 6e-23 Identities = 230/287 (80%) Strand = Plus / Plus Query: 107 gtctccgcgacggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggcc 166 ||||| ||| ||||||||| || ||| | |||||||||||| | ||||||||||||| Sbjct: 18812 gtctcggcggcggcggacgcggcggtggtgctcttctcgctcacggtggcggtggcggcg 18871 Query: 167 ccgctgttcgactcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggac 226 |||||| ||||| | ||| ||||||||||||| |||| ||| ||||||||||| | Sbjct: 18872 ccgctgatcgacgcgcagtccgtgctcccgcgccacctcttcccggcgccgctcgtctcc 18931 Query: 227 atccaccggtggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttc 286 || | ||||||| | || || ||||||| |||||||||| ||| ||| ||| ||| Sbjct: 18932 ctcaagcggtggtacgcccgcgagttcggcgactacctcgtggcccgccccccgggcttc 18991 Query: 287 ttcctcggcttcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctc 346 ||| || ||||||||||||| || |||||||| |||||| || | |||||| |||| Sbjct: 18992 ctccgggggctcgtctggctcgagctcgccttcctctggccgctcgccctcgccaccctc 19051 Query: 347 tacggcatcctcgcgggccgccgctggtcggccaccacctccctcat 393 |||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 19052 tacggcatcctcgcccgccgccgctgggccgccaccacctccctcat 19098
>dbj|AK112061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G08, full insert sequence Length = 903 Score = 117 bits (59), Expect = 6e-23 Identities = 230/287 (80%) Strand = Plus / Plus Query: 107 gtctccgcgacggcggacgtggtggtcgcgctcttctcgctgatcatggcggtggcggcc 166 ||||| ||| ||||||||| || ||| | |||||||||||| | ||||||||||||| Sbjct: 76 gtctcggcggcggcggacgcggcggtggtgctcttctcgctcacggtggcggtggcggcg 135 Query: 167 ccgctgttcgactcccaggtcgtgctcccgcgcggcctccaccctgcgccgctcgtggac 226 |||||| ||||| | ||| ||||||||||||| |||| ||| ||||||||||| | Sbjct: 136 ccgctgatcgacgcgcagtccgtgctcccgcgccacctcttcccggcgccgctcgtctcc 195 Query: 227 atccaccggtggttcaccgtcgcgttcggccactacctcgtcgccgacccgccgcctttc 286 || | ||||||| | || || ||||||| |||||||||| ||| ||| ||| ||| Sbjct: 196 ctcaagcggtggtacgcccgcgagttcggcgactacctcgtggcccgccccccgggcttc 255 Query: 287 ttcctcggcttcgtctggctcgacctggccttcctgtggccggtctgcgtcgccaacctc 346 ||| || ||||||||||||| || |||||||| |||||| || | |||||| |||| Sbjct: 256 ctccgggggctcgtctggctcgagctcgccttcctctggccgctcgccctcgccaccctc 315 Query: 347 tacggcatcctcgcgggccgccgctggtcggccaccacctccctcat 393 |||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct: 316 tacggcatcctcgcccgccgccgctgggccgccaccacctccctcat 362
>gb|BT017783.1| Zea mays clone EL01N0503G10.c mRNA sequence Length = 887 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 305 ctcgacctggccttcctgtggccggtctgcgtcgccaacctctacggcatcctcgcgggc 364 ||||| || ||||||| |||||| || |||||||| ||||||||||||||| | || Sbjct: 244 ctcgagctcgccttccaatggccgctcgccgtcgccacactctacggcatcctcacccgc 303 Query: 365 cgccgctggtcggccaccacctccctcatggc 396 ||||||||| | |||||||||||||||||||| Sbjct: 304 cgccgctgggctgccaccacctccctcatggc 335
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 17833864 tagattaaatttgtttttgttat 17833886
>ref|NM_167595.3| Drosophila melanogaster Shaker CG12348-RE, transcript variant E (Sh), mRNA Length = 2804 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 2704 tagattaaatttgtttttgttat 2682
>ref|NM_167594.2| Drosophila melanogaster Shaker CG12348-RC, transcript variant C (Sh), mRNA Length = 2432 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 2332 tagattaaatttgtttttgttat 2310
>gb|AC073205.6| Homo sapiens BAC clone RP11-323K15 from 7, complete sequence Length = 149914 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 93350 tagattaaatttgtttttgttat 93328
>gb|AC012097.8| Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone BACR29H04, complete sequence Length = 155670 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 80603 tagattaaatttgtttttgttat 80581
>emb|X07132.1|DMSHAKE2 D. melanogaster (late popul.) Shaker ShB mRNA for put. K(+)-channel Length = 2429 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 2332 tagattaaatttgtttttgttat 2310
>emb|X06742.1|DMSHB1MR D.melanogaster ShB1 mRNA for Shaker gene Length = 2732 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 2648 tagattaaatttgtttttgttat 2626
>gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone BACR17D02, complete sequence Length = 186748 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 593 tagattaaatttgtttttgttat 615 ||||||||||||||||||||||| Sbjct: 32011 tagattaaatttgtttttgttat 32033
>gb|AC093900.3| Homo sapiens BAC clone RP11-730E1 from 4, complete sequence Length = 152581 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 tctctttctcttctaaagaaaa 31 |||||||||||||||||||||| Sbjct: 18393 tctctttctcttctaaagaaaa 18414
>gb|AE005116.1| Halobacterium sp. NRC-1 section 147 of 170 of the complete genome Length = 12097 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Minus Query: 365 cgccgctggtcggccaccacct 386 |||||||||||||||||||||| Sbjct: 5184 cgccgctggtcggccaccacct 5163
>ref|XM_001032848.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00486360) mRNA, complete cds Length = 5973 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 aaaaaagactagattaaattt 604 ||||||||||||||||||||| Sbjct: 5771 aaaaaagactagattaaattt 5791
>gb|AC190186.2| Pan troglodytes BAC clone CH251-581H11 from chromosome 7, complete sequence Length = 187765 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgtt 613 ||||||||||||||||||||| Sbjct: 15816 tagattaaatttgtttttgtt 15796
>ref|XM_001210870.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_00784) mRNA, complete cds Length = 1428 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 tcctcggcttcgtctggctcg 308 ||||||||||||||||||||| Sbjct: 1355 tcctcggcttcgtctggctcg 1335
>gb|AC190141.2| Pan troglodytes BAC clone CH251-443L3 from chromosome 7, complete sequence Length = 168929 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 593 tagattaaatttgtttttgtt 613 ||||||||||||||||||||| Sbjct: 133960 tagattaaatttgtttttgtt 133940
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 8985827 tgctgcaacatctgttgcatctgct 8985851
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 ctgatcatggcggtggcggcc 166 ||||||||||||||||||||| Sbjct: 4154727 ctgatcatggcggtggcggcc 4154707
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 cgcgggccgccgctggtcggc 378 ||||||||||||||||||||| Sbjct: 668852 cgcgggccgccgctggtcggc 668872
>ref|NM_168310.1| Drosophila melanogaster smaug CG5263-RC, transcript variant C (smg), mRNA Length = 4272 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 3067 tgctgcaacatctgttgcatctgct 3043
>ref|NM_168309.1| Drosophila melanogaster smaug CG5263-RB, transcript variant B (smg), mRNA Length = 4384 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 3179 tgctgcaacatctgttgcatctgct 3155
>ref|NM_079263.2| Drosophila melanogaster smaug CG5263-RA, transcript variant A (smg), mRNA Length = 4444 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 3175 tgctgcaacatctgttgcatctgct 3151
>gb|AC010114.6| Drosophila melanogaster 3L BAC RP98-10P9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181726 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 116892 tgctgcaacatctgttgcatctgct 116916
>gb|AC157607.4| Mus musculus chromosome 1, clone RP23-401G11, complete sequence Length = 200421 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 agattaaatttgtttttgtta 614 ||||||||||||||||||||| Sbjct: 46403 agattaaatttgtttttgtta 46423
>gb|AC091218.2| Drosophila melanogaster 3L BAC RP98-3E24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179972 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 5649 tgctgcaacatctgttgcatctgct 5673
>gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, complete sequence Length = 185857 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tcctctctttctcttctaaag 27 ||||||||||||||||||||| Sbjct: 5810 tcctctctttctcttctaaag 5790
>emb|AL049633.3|HSJ1069O1 Human DNA sequence from clone RP5-1069O1 on chromosome 20 Contains part of the gene for a novel protein (LOC284776), complete sequence Length = 92357 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 602 tttgtttttgttatatttcaagaaa 626 ||||||||| ||||||||||||||| Sbjct: 68226 tttgtttttattatatttcaagaaa 68250
>gb|AY058607.1| Drosophila melanogaster LD30037 full length cDNA Length = 3898 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 3179 tgctgcaacatctgttgcatctgct 3155
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 acggcggacgtggtggtcgcg 136 ||||||||||||||||||||| Sbjct: 2076103 acggcggacgtggtggtcgcg 2076123
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 tcctcggcttcgtctggctcg 308 ||||||||||||||||||||| Sbjct: 1673870 tcctcggcttcgtctggctcg 1673890
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cgcgggccgccgctggtcggc 378 ||||||||||||||||||||| Sbjct: 813923 cgcgggccgccgctggtcggc 813903
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 cgcgggccgccgctggtcggc 378 ||||||||||||||||||||| Sbjct: 1987928 cgcgggccgccgctggtcggc 1987948
>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7 Length = 83948 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 599 aaatttgtttttgttatattt 619 ||||||||||||||||||||| Sbjct: 73534 aaatttgtttttgttatattt 73554
>gb|AF132213.1|AF132213 Drosophila melanogaster smaug protein mRNA, complete cds Length = 4135 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 2993 tgctgcaacatctgttgcatctgct 2969
>emb|BX649229.2| Chicken DNA sequence from clone WAG-41C10, complete sequence Length = 147869 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 599 aaatttgtttttgttatattt 619 ||||||||||||||||||||| Sbjct: 13020 aaatttgtttttgttatattt 13000
>gb|AC012380.1|AC012380 Genomic Sequence For Homo sapiens Clone 125H5, Chromosome 20, complete sequence Length = 108623 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 602 tttgtttttgttatatttcaagaaa 626 ||||||||| ||||||||||||||| Sbjct: 83341 tttgtttttattatatttcaagaaa 83317
>gb|AF159852.1|AF159852 Drosophila melanogaster RNA-binding protein Smaug (smg) mRNA, complete cds Length = 4410 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 553 tgctgcaacatcggttgcatctgct 577 |||||||||||| |||||||||||| Sbjct: 3135 tgctgcaacatctgttgcatctgct 3111
>dbj|AP002409.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-781P6, complete sequence Length = 180566 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 607 ttttgttatatttcaagaaaa 627 ||||||||||||||||||||| Sbjct: 160462 ttttgttatatttcaagaaaa 160442 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 132,642,860 Number of extensions: 8249445 Number of successful extensions: 184136 Number of sequences better than 10.0: 47 Number of HSP's gapped: 184136 Number of HSP's successfully gapped: 57 Length of query: 734 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 712 Effective length of database: 18,508,616,841 Effective search space: 13178135190792 Effective search space used: 13178135190792 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
