No.
Definition
Score (bits)
E Value
1 emb|CT829483.1| Oryza sativa (indica cultivar-group) cDNA clone:...
375
e-100
2 emb|CT829482.1| Oryza sativa (indica cultivar-group) cDNA clone:...
375
e-100
3 ref|NM_001049478.1| Oryza sativa (japonica cultivar-group) Os01g...
375
e-100
4 dbj|AK068083.1| Oryza sativa (japonica cultivar-group) cDNA clon...
375
e-100
5 gb|AY104815.1| Zea mays PCO122561 mRNA sequence
319
2e-83
6 ref|NM_001049662.1| Oryza sativa (japonica cultivar-group) Os01g...
250
2e-62
7 dbj|AK102705.1| Oryza sativa (japonica cultivar-group) cDNA clon...
250
2e-62
8 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
129
4e-26
9 dbj|AP004224.3| Oryza sativa (japonica cultivar-group) genomic D...
129
4e-26
10 dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic D...
123
2e-24
11 gb|BT012826.1| Lycopersicon esculentum clone 113878R, mRNA sequence
56
5e-04
12 gb|AC189632.1| Brassica rapa subsp. pekinensis clone KBrS003O10,...
48
0.11
13 dbj|AK239581.1| Sus scrofa mRNA, clone:THY010114B03, expressed i...
46
0.45
14 gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
46
0.45
15 emb|BX901914.13| Zebrafish DNA sequence from clone DKEY-27F18 in...
46
0.45
16 dbj|AP006184.1| Sus scrofa CC chemokine receptor genes (CCR9, CX...
46
0.45
17 ref|NM_001001624.1| Sus scrofa chemokine C-C motif receptor 9 (C...
46
0.45
18 emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in ...
46
0.45
19 gb|AC154688.2| Mus musculus BAC clone RP23-140P24 from 13, compl...
46
0.45
20 emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chro...
46
0.45
21 ref|XM_001021067.1| Tetrahymena thermophila SB210 hypothetical p...
44
1.8
22 gb|AC171728.2| Solanum lycopersicum chromosome 1 clone C01HBa021...
44
1.8
23 ref|NM_001040286.1| Ovis aries chemokine C-C motif receptor 9 (C...
44
1.8
24 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
44
1.8
25 gb|AF242264.1|AF242264 Delitschia didyma specimen-voucher UME 31...
44
1.8
26 emb|Z17306.1|DCDRTS D.carota mRNA for dihydrofolate reductase an...
44
1.8
27 emb|AJ003139.1|DCAJ3139 Daucus carota DHFR-TS gene for dihydrofo...
44
1.8
28 emb|CR457443.5| Zebrafish DNA sequence from clone CH211-202J20 i...
44
1.8
29 gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, comple...
44
1.8
30 dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic D...
44
1.8
31 emb|Z33996.1|DCDFRTS D.carota (Lunga di Amsterdam) gene for dihy...
44
1.8
32 ref|XM_001024156.1| Tetrahymena thermophila SB210 jmjC domain co...
42
7.1
33 gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete s...
42
7.1
34 gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosom...
42
7.1
35 gb|AC149480.1| Populus trichocarpa clone Pop1-048O04, complete s...
42
7.1
36 gb|AC100378.10| Mus musculus chromosome 10, clone RP23-130O4, co...
42
7.1
37 gb|AC120855.9| Mus musculus chromosome 18, clone RP23-270P23, co...
42
7.1
38 ref|XM_862513.1| PREDICTED: Canis familiaris similar to CG7872-P...
42
7.1
39 ref|XM_538787.2| PREDICTED: Canis familiaris similar to CG7872-P...
42
7.1
40 ref|XM_862494.1| PREDICTED: Canis familiaris similar to CG7872-P...
42
7.1
41 gb|AC129012.4| Mus musculus BAC clone RP24-545L10 from chromosom...
42
7.1
42 gb|AC125084.4| Mus musculus BAC clone RP24-100F10 from chromosom...
42
7.1
43 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
42
7.1
44 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
42
7.1
45 gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom...
42
7.1
46 emb|CR628325.11| Zebrafish DNA sequence from clone DKEY-109N11 i...
42
7.1
47 emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
42
7.1
48 emb|Y11967.1|OGCCTG O.granulifera macronuclear CCT gamma gene
42
7.1
49 emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 i...
42
7.1
50 emb|BX255922.4| Zebrafish DNA sequence from clone CH211-125A15 i...
42
7.1
51 gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene clust...
42
7.1
52 gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, r...
42
7.1
53 dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge...
42
7.1
54 emb|CR762476.2| Human DNA sequence from clone DAAP-57C1 on chrom...
42
7.1
55 gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Ca...
42
7.1
56 dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D...
42
7.1
57 emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in l...
42
7.1
58 emb|AL929584.22| Zebrafish DNA sequence from clone CH211-147H21 ...
42
7.1
59 gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...
42
7.1
60 emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 i...
42
7.1
61 emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in l...
42
7.1
62 gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s...
42
7.1
63 gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosom...
42
7.1
64 emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chr...
42
7.1
>emb|CT829483.1 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117I08, full
insert sequence
Length = 1827
Score = 375 bits (189), Expect = e-100
Identities = 273/301 (90%)
Strand = Plus / Plus
Query: 944 ctccatcaagagttgctgatccaacaccaggacttgttatatcagaaaccggtcgttatc 1003
|||||||| |||||| ||||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 1058 ctccatcagaagttgcagatccaacaccaggacttgctgtctcagaaaccgggcgttatc 1117
Query: 1004 ataacttgcatgttccggtgaaattgatggagtgttttttaagggttgctgaggcgaaca 1063
| ||||| ||||||||||| || |||||||| |||||| |||||||||||||||| ||||
Sbjct: 1118 agaacttacatgttccggtaaagttgatggaatgttttctaagggttgctgaggcaaaca 1177
Query: 1064 ctaaaagaagtttagaaacatgtggggttcttgctggtaccctgaaaaagagaacttttc 1123
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 1178 ctaagagaagtttagaaacatgtggagttcttgctggtaccctgaaaaagagaacctttt 1237
Query: 1124 atgtgtcaaccttaataattccaaagcagaaatctacatctgattcatgtgaagctacaa 1183
||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1238 atgtgactgccttgataattccaaagcagaaatctacatctgattcatgtgaagcgacaa 1297
Query: 1184 atgaagaagaactatttgaagttcaggacaagggctcactattcactcttggttggattc 1243
||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct: 1298 atgaagatgaattatttgatgttcaggacaagggctcgcttttcactcttggttggattc 1357
Query: 1244 a 1244
|
Sbjct: 1358 a 1358
Score = 180 bits (91), Expect = 1e-41
Identities = 166/191 (86%)
Strand = Plus / Plus
Query: 36 catcgaggcctgcgcgcggccgatcgccatcgaccaccgcatcagcctcccctactactt 95
||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 137 catcgaggcgtgcgcgcgcccgatcgccgtcgaccaccgcatcaagctcccctactactt 196
Query: 96 ccgcatcgcgggcaccctcctccgccaggccaagatatatcgagacgagaagaacatcct 155
||||||||| || | ||||||||||||||| |||||||||||||||||||| || || |
Sbjct: 197 ccgcatcgccgggaacctcctccgccaggctaagatatatcgagacgagaataatctcgt 256
Query: 156 cgacctgtatgtcatcctcctgagatatacaagcttgctgtgtgagaccatccccaagca 215
|||||||||||||||||||||| | || | |||||| | || ||||| || || |||||
Sbjct: 257 cgacctgtatgtcatcctcctgcgttactcgagcttggtttgcgagacgattccaaagca 316
Query: 216 ccgtgattacc 226
|||||| ||||
Sbjct: 317 ccgtgactacc 327
Score = 105 bits (53), Expect = 6e-19
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 545 atctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatgggc 604
|||| ||||| || |||||||| ||| | |||||||| || ||||| || ||||||||||
Sbjct: 670 atctccctttccctaaagaagaaacattagctagacactctatattgggacctaatgggc 729
Query: 605 ttcatggacaatggaccgggcctgttgctgcagtcaaggtccaatatccatgcaatcttg 664
||||||| |||||||| ||||||||| ||||| ||||||| || |||||| |||||||||
Sbjct: 730 ttcatgggcaatggactgggcctgttactgcaatcaaggttcagtatccaagcaatcttg 789
Query: 665 a 665
|
Sbjct: 790 a 790
Score = 61.9 bits (31), Expect = 8e-06
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 297 tgagcttgagtctctgaagccagttgtgaagcggcagctcgttgagcataacaga 351
|||||||||||| ||||||||||||||| ||||||| || |||||||||||||
Sbjct: 404 tgagcttgagtcactgaagccagttgtgcagcggcaaatcactgagcataacaga 458
Score = 61.9 bits (31), Expect = 8e-06
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 820 gcagaagaatgcacctctacaccttctgcaagtctggtgggagaattatcccagttgaat 879
||||| |||||| ||||| || ||||| ||||||| | |||||||||||| |||| |
Sbjct: 943 gcagaggaatgcgcctctgtactttctgttagtctggaagaagaattatcccaattgagt 1002
Query: 880 atcagacagccttcacccccaccagtcctggcaga 914
|||| |||||||||||| || |||||| |||||||
Sbjct: 1003 atcaaacagccttcacctcctccagtcttggcaga 1037
>ref|NM_001049662.1 | Oryza sativa (japonica cultivar-group) Os01g0499300 (Os01g0499300)
mRNA, complete cds
Length = 2264
Score = 250 bits (126), Expect = 2e-62
Identities = 216/246 (87%)
Strand = Plus / Plus
Query: 1000 tatcataacttgcatgttccggtgaaattgatggagtgttttttaagggttgctgaggcg 1059
||||| || |||||||| ||||||| ||| |||||||||||| | ||||||||||||||
Sbjct: 1431 tatcagaatttgcatgtgccggtgacattaatggagtgttttctgagggttgctgaggca 1490
Query: 1060 aacactaaaagaagtttagaaacatgtggggttcttgctggtaccctgaaaaagagaact 1119
|||||| || | | | ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1491 aacactgcaaataatctggaaacatgtggtattcttgctggtactctgaaaaagagaact 1550
Query: 1120 tttcatgtgtcaaccttaataattccaaagcagaaatctacatctgattcatgtgaagct 1179
||| ||||| |||| | |||||||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 1551 ttttatgtgacaacactgataattcctaagcagagatcaacatctgattcatgtcaagct 1610
Query: 1180 acaaatgaagaagaactatttgaagttcaggacaagggctcactattcactcttggttgg 1239
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1611 acaaatgaagaagaaatatttgaagttcaggacaaaggctcacttttcactcttggttgg 1670
Query: 1240 attcat 1245
||||||
Sbjct: 1671 attcat 1676
Score = 111 bits (56), Expect = 9e-21
Identities = 134/160 (83%)
Strand = Plus / Plus
Query: 65 tcgaccaccgcatcagcctcccctactacttccgcatcgcgggcaccctcctccgccagg 124
||||||||||||||||| || ||||||| ||||||||||| | || ||||||||||||||
Sbjct: 487 tcgaccaccgcatcagcatcgcctactatttccgcatcgccgacaacctcctccgccagg 546
Query: 125 ccaagatatatcgagacgagaagaacatcctcgacctgtatgtcatcctcctgagatata 184
|||| |||||| | || |||||||| || | ||||| || ||||||| ||||||||
Sbjct: 547 ccaacatatatagggaggagaagaatctcgtagacctttacatcatccttctgagatact 606
Query: 185 caagcttgctgtgtgagaccatccccaagcaccgtgatta 224
| || |||||||||||||| ||||| || || ||||||||
Sbjct: 607 cgagtttgctgtgtgagactatcccaaaacatcgtgatta 646
Score = 69.9 bits (35), Expect = 3e-08
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 861 agaattatcccagttgaatatcagacagccttcacccccaccagtcctggcagaagtaca 920
|||||| ||||||||||||||||| || ||||| |||||||| ||| ||||| |||||||
Sbjct: 1295 agaattttcccagttgaatatcaggcaaccttctcccccacctgtcatggcacaagtaca 1354
Query: 921 tcc 923
|||
Sbjct: 1355 tcc 1357
Score = 60.0 bits (30), Expect = 3e-05
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 287 atgttgtcaatgagcttgagtctctgaagccagttgtg 324
||||||| |||||||||||| |||||||||||||||||
Sbjct: 715 atgttgttaatgagcttgagactctgaagccagttgtg 752
Score = 50.1 bits (25), Expect = 0.029
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 544 aatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatggg 603
|||||||||| ||| |||||||| || || | |||||||| || | ||||||||||||
Sbjct: 984 aatctgccttatcctaaagaagaaactctatccagacattcggtactggggcctaatggg 1043
Query: 604 cttcatggacaatggac 620
|||||||| |||||||
Sbjct: 1044 cttcatggcaaatggac 1060
>dbj|AK102705.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033103P11, full
insert sequence
Length = 2267
Score = 250 bits (126), Expect = 2e-62
Identities = 216/246 (87%)
Strand = Plus / Plus
Query: 1000 tatcataacttgcatgttccggtgaaattgatggagtgttttttaagggttgctgaggcg 1059
||||| || |||||||| ||||||| ||| |||||||||||| | ||||||||||||||
Sbjct: 1432 tatcagaatttgcatgtgccggtgacattaatggagtgttttctgagggttgctgaggca 1491
Query: 1060 aacactaaaagaagtttagaaacatgtggggttcttgctggtaccctgaaaaagagaact 1119
|||||| || | | | ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1492 aacactgcaaataatctggaaacatgtggtattcttgctggtactctgaaaaagagaact 1551
Query: 1120 tttcatgtgtcaaccttaataattccaaagcagaaatctacatctgattcatgtgaagct 1179
||| ||||| |||| | |||||||| ||||||| ||| ||||||||||||||| |||||
Sbjct: 1552 ttttatgtgacaacactgataattcctaagcagagatcaacatctgattcatgtcaagct 1611
Query: 1180 acaaatgaagaagaactatttgaagttcaggacaagggctcactattcactcttggttgg 1239
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1612 acaaatgaagaagaaatatttgaagttcaggacaaaggctcacttttcactcttggttgg 1671
Query: 1240 attcat 1245
||||||
Sbjct: 1672 attcat 1677
Score = 111 bits (56), Expect = 9e-21
Identities = 134/160 (83%)
Strand = Plus / Plus
Query: 65 tcgaccaccgcatcagcctcccctactacttccgcatcgcgggcaccctcctccgccagg 124
||||||||||||||||| || ||||||| ||||||||||| | || ||||||||||||||
Sbjct: 488 tcgaccaccgcatcagcatcgcctactatttccgcatcgccgacaacctcctccgccagg 547
Query: 125 ccaagatatatcgagacgagaagaacatcctcgacctgtatgtcatcctcctgagatata 184
|||| |||||| | || |||||||| || | ||||| || ||||||| ||||||||
Sbjct: 548 ccaacatatatagggaggagaagaatctcgtagacctttacatcatccttctgagatact 607
Query: 185 caagcttgctgtgtgagaccatccccaagcaccgtgatta 224
| || |||||||||||||| ||||| || || ||||||||
Sbjct: 608 cgagtttgctgtgtgagactatcccaaaacatcgtgatta 647
Score = 69.9 bits (35), Expect = 3e-08
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 861 agaattatcccagttgaatatcagacagccttcacccccaccagtcctggcagaagtaca 920
|||||| ||||||||||||||||| || ||||| |||||||| ||| ||||| |||||||
Sbjct: 1296 agaattttcccagttgaatatcaggcaaccttctcccccacctgtcatggcacaagtaca 1355
Query: 921 tcc 923
|||
Sbjct: 1356 tcc 1358
Score = 60.0 bits (30), Expect = 3e-05
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 287 atgttgtcaatgagcttgagtctctgaagccagttgtg 324
||||||| |||||||||||| |||||||||||||||||
Sbjct: 716 atgttgttaatgagcttgagactctgaagccagttgtg 753
Score = 50.1 bits (25), Expect = 0.029
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 544 aatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatggg 603
|||||||||| ||| |||||||| || || | |||||||| || | ||||||||||||
Sbjct: 985 aatctgccttatcctaaagaagaaactctatccagacattcggtactggggcctaatggg 1044
Query: 604 cttcatggacaatggac 620
|||||||| |||||||
Sbjct: 1045 cttcatggcaaatggac 1061
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
Length = 43261740
Score = 129 bits (65), Expect = 4e-26
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 1175 aagctacaaatgaagaagaactatttgaagttcaggacaagggctcactattcactcttg 1234
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct: 17210041 aagctacaaatgaagaagaaatatttgaagttcaggacaaaggctcacttttcactcttg 17209982
Query: 1235 gttggattcatgtaagt 1251
|||||||||||||||||
Sbjct: 17209981 gttggattcatgtaagt 17209965
Score = 123 bits (62), Expect = 2e-24
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1018 ccggtgaaattgatggagtgttttttaagggttgctgaggcgaacactaaaagaagttta 1077
||||| || |||||||| |||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 13283917 ccggtaaagttgatggaatgttttctaagggttgctgaggcaaacactaagagaagttta 13283976
Query: 1078 gaaacatgtggggttcttgctggtaccctg 1107
||||||||||| ||||||||||||||||||
Sbjct: 13283977 gaaacatgtggagttcttgctggtaccctg 13284006
Score = 113 bits (57), Expect = 2e-21
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 36 catcgaggcctgcgcgcggccgatcgccatcgaccaccgcatcagcctcccctactactt 95
||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 13279392 catcgaggcgtgcgcgcgcccgatcgccgtcgaccaccgcatcaagctcccctactactt 13279451
Query: 96 ccgcatcgcgggcaccctcctccgccagg 124
||||||||| || | ||||||||||||||
Sbjct: 13279452 ccgcatcgccgggaacctcctccgccagg 13279480
Score = 113 bits (57), Expect = 2e-21
Identities = 171/209 (81%)
Strand = Plus / Plus
Query: 706 ttgaaccaagatggtctgcatggtcccagtaccacatatcccgatagcactacaaaagat 765
|||||||||||||||| | ||||||||||||| | || | ||||||||| || ||
Sbjct: 13283445 ttgaaccaagatggtcagaatggtcccagtacaatatccacagatagcactcaaattgag 13283504
Query: 766 aacgaggatatgaaatccgttctatctcttgatgatggtcgatggtctgcaccagcagaa 825
|| || ||||||||||| ||||| || ||||||||||||||||||||| | |||||
Sbjct: 13283505 aatgatgatatgaaatctgttctgtcccttgatgatggtcgatggtctaagctggcagag 13283564
Query: 826 gaatgcacctctacaccttctgcaagtctggtgggagaattatcccagttgaatatcaga 885
|||||| ||||| |||||||| ||||||| | |||||||||||| |||| ||||| |
Sbjct: 13283565 gaatgcgcctctgtaccttctgttagtctggaagaagaattatcccaattgagtatcaaa 13283624
Query: 886 cagccttcacccccaccagtcctggcaga 914
||||||||||| || |||||| |||||||
Sbjct: 13283625 cagccttcacctcctccagtcttggcaga 13283653
Score = 105 bits (53), Expect = 6e-19
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1171 tgtgaagctacaaatgaagaagaactatttgaagttcaggacaagggctcactattcact 1230
|||||||| ||||||||||| ||| ||||||| ||||||||||||||||| || ||||||
Sbjct: 13284303 tgtgaagcgacaaatgaagatgaattatttgatgttcaggacaagggctcgcttttcact 13284362
Query: 1231 cttggttggattcatgtaagt 1251
|||||||||||||| ||||||
Sbjct: 13284363 cttggttggattcacgtaagt 13284383
Score = 91.7 bits (46), Expect = 9e-15
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 543 aaatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatgg 602
|||||| ||||| || |||||||| ||| | |||||||| || ||||| || ||||||||
Sbjct: 13281338 aaatctccctttccctaaagaagaaacattagctagacactctatattgggacctaatgg 13281397
Query: 603 gcttcatggacaatggaccgggcctgttgctgcagtcaaggt 644
||||||||| |||||||| ||||||||| ||||| |||||||
Sbjct: 13281398 gcttcatgggcaatggactgggcctgttactgcaatcaaggt 13281439
Score = 79.8 bits (40), Expect = 3e-11
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1107 gaaaaagagaacttttcatgtgtcaaccttaataattccaaagcagaaatctacatctga 1166
|||||||||||| ||| ||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 13284094 gaaaaagagaaccttttatgtgactgccttgataattccaaagcagaaatctacatctga 13284153
Query: 1167 ttca 1170
||||
Sbjct: 13284154 ttca 13284157
Score = 75.8 bits (38), Expect = 5e-10
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 944 ctccatcaagagttgctgatccaacaccaggacttgttatatcagaaaccggtcgttatc 1003
|||||||| |||||| ||||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 13283674 ctccatcagaagttgcagatccaacaccaggacttgctgtctcagaaaccgggcgttatc 13283733
Query: 1004 ataacttgcatgtt 1017
| ||||| ||||||
Sbjct: 13283734 agaacttacatgtt 13283747
Score = 73.8 bits (37), Expect = 2e-09
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 121 caggccaagatatatcgagacgagaagaacatcctcgacctgtatgtcatcctcctg 177
||||| |||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 13279719 caggctaagatatatcgagacgagaataatctcgtcgacctgtatgtcatcctcctg 13279775
Score = 71.9 bits (36), Expect = 8e-09
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 65 tcgaccaccgcatcagcctcccctactacttccgcatcgcgggcaccctcctccgccagg 124
||||||||||||||||| || ||||||| ||||||||||| | || ||||||||||||||
Sbjct: 17213899 tcgaccaccgcatcagcatcgcctactatttccgcatcgccgacaacctcctccgccagg 17213840
Score = 69.9 bits (35), Expect = 3e-08
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 861 agaattatcccagttgaatatcagacagccttcacccccaccagtcctggcagaagtaca 920
|||||| ||||||||||||||||| || ||||| |||||||| ||| ||||| |||||||
Sbjct: 17211549 agaattttcccagttgaatatcaggcaaccttctcccccacctgtcatggcacaagtaca 17211490
Query: 921 tcc 923
|||
Sbjct: 17211489 tcc 17211487
Score = 63.9 bits (32), Expect = 2e-06
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 1107 gaaaaagagaacttttcatgtgtcaaccttaataattccaaagcagaaatctacatctga 1166
|||||||||||||||| ||||| |||| | |||||||| ||||||| ||| ||||||||
Sbjct: 17211046 gaaaaagagaactttttatgtgacaacactgataattcctaagcagagatcaacatctga 17210987
Query: 1167 ttca 1170
||||
Sbjct: 17210986 ttca 17210983
Score = 61.9 bits (31), Expect = 8e-06
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 297 tgagcttgagtctctgaagccagttgtgaagcggcagctcgttgagcataacaga 351
|||||||||||| ||||||||||||||| ||||||| || |||||||||||||
Sbjct: 13280122 tgagcttgagtcactgaagccagttgtgcagcggcaaatcactgagcataacaga 13280176
Score = 60.0 bits (30), Expect = 3e-05
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1018 ccggtgaaattgatggagtgttttttaagggttgctgaggcgaacactaaaagaagttta 1077
||||||| ||| |||||||||||| | |||||||||||||| |||||| || | | |
Sbjct: 17211218 ccggtgacattaatggagtgttttctgagggttgctgaggcaaacactgcaaataatctg 17211159
Query: 1078 gaaacatgtggggttcttgctggtac 1103
||||||||||| |||||||||||||
Sbjct: 17211158 gaaacatgtggtattcttgctggtac 17211133
Score = 60.0 bits (30), Expect = 3e-05
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 287 atgttgtcaatgagcttgagtctctgaagccagttgtg 324
||||||| |||||||||||| |||||||||||||||||
Sbjct: 17213150 atgttgttaatgagcttgagactctgaagccagttgtg 17213113
Score = 50.1 bits (25), Expect = 0.029
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 544 aatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatggg 603
|||||||||| ||| |||||||| || || | |||||||| || | ||||||||||||
Sbjct: 17212047 aatctgccttatcctaaagaagaaactctatccagacattcggtactggggcctaatggg 17211988
Query: 604 cttcatggacaatggac 620
|||||||| |||||||
Sbjct: 17211987 cttcatggcaaatggac 17211971
>dbj|AP004224.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111E11
Length = 152835
Score = 129 bits (65), Expect = 4e-26
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 1175 aagctacaaatgaagaagaactatttgaagttcaggacaagggctcactattcactcttg 1234
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct: 122997 aagctacaaatgaagaagaaatatttgaagttcaggacaaaggctcacttttcactcttg 122938
Query: 1235 gttggattcatgtaagt 1251
|||||||||||||||||
Sbjct: 122937 gttggattcatgtaagt 122921
Score = 71.9 bits (36), Expect = 8e-09
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 65 tcgaccaccgcatcagcctcccctactacttccgcatcgcgggcaccctcctccgccagg 124
||||||||||||||||| || ||||||| ||||||||||| | || ||||||||||||||
Sbjct: 126855 tcgaccaccgcatcagcatcgcctactatttccgcatcgccgacaacctcctccgccagg 126796
Score = 69.9 bits (35), Expect = 3e-08
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 861 agaattatcccagttgaatatcagacagccttcacccccaccagtcctggcagaagtaca 920
|||||| ||||||||||||||||| || ||||| |||||||| ||| ||||| |||||||
Sbjct: 124505 agaattttcccagttgaatatcaggcaaccttctcccccacctgtcatggcacaagtaca 124446
Query: 921 tcc 923
|||
Sbjct: 124445 tcc 124443
Score = 63.9 bits (32), Expect = 2e-06
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 1107 gaaaaagagaacttttcatgtgtcaaccttaataattccaaagcagaaatctacatctga 1166
|||||||||||||||| ||||| |||| | |||||||| ||||||| ||| ||||||||
Sbjct: 124002 gaaaaagagaactttttatgtgacaacactgataattcctaagcagagatcaacatctga 123943
Query: 1167 ttca 1170
||||
Sbjct: 123942 ttca 123939
Score = 60.0 bits (30), Expect = 3e-05
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1018 ccggtgaaattgatggagtgttttttaagggttgctgaggcgaacactaaaagaagttta 1077
||||||| ||| |||||||||||| | |||||||||||||| |||||| || | | |
Sbjct: 124174 ccggtgacattaatggagtgttttctgagggttgctgaggcaaacactgcaaataatctg 124115
Query: 1078 gaaacatgtggggttcttgctggtac 1103
||||||||||| |||||||||||||
Sbjct: 124114 gaaacatgtggtattcttgctggtac 124089
Score = 60.0 bits (30), Expect = 3e-05
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 287 atgttgtcaatgagcttgagtctctgaagccagttgtg 324
||||||| |||||||||||| |||||||||||||||||
Sbjct: 126106 atgttgttaatgagcttgagactctgaagccagttgtg 126069
Score = 50.1 bits (25), Expect = 0.029
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 544 aatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatggg 603
|||||||||| ||| |||||||| || || | |||||||| || | ||||||||||||
Sbjct: 125003 aatctgccttatcctaaagaagaaactctatccagacattcggtactggggcctaatggg 124944
Query: 604 cttcatggacaatggac 620
|||||||| |||||||
Sbjct: 124943 cttcatggcaaatggac 124927
>dbj|AP003331.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088D01
Length = 146144
Score = 123 bits (62), Expect = 2e-24
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1018 ccggtgaaattgatggagtgttttttaagggttgctgaggcgaacactaaaagaagttta 1077
||||| || |||||||| |||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 24275 ccggtaaagttgatggaatgttttctaagggttgctgaggcaaacactaagagaagttta 24334
Query: 1078 gaaacatgtggggttcttgctggtaccctg 1107
||||||||||| ||||||||||||||||||
Sbjct: 24335 gaaacatgtggagttcttgctggtaccctg 24364
Score = 113 bits (57), Expect = 2e-21
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 36 catcgaggcctgcgcgcggccgatcgccatcgaccaccgcatcagcctcccctactactt 95
||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 19750 catcgaggcgtgcgcgcgcccgatcgccgtcgaccaccgcatcaagctcccctactactt 19809
Query: 96 ccgcatcgcgggcaccctcctccgccagg 124
||||||||| || | ||||||||||||||
Sbjct: 19810 ccgcatcgccgggaacctcctccgccagg 19838
Score = 113 bits (57), Expect = 2e-21
Identities = 171/209 (81%)
Strand = Plus / Plus
Query: 706 ttgaaccaagatggtctgcatggtcccagtaccacatatcccgatagcactacaaaagat 765
|||||||||||||||| | ||||||||||||| | || | ||||||||| || ||
Sbjct: 23803 ttgaaccaagatggtcagaatggtcccagtacaatatccacagatagcactcaaattgag 23862
Query: 766 aacgaggatatgaaatccgttctatctcttgatgatggtcgatggtctgcaccagcagaa 825
|| || ||||||||||| ||||| || ||||||||||||||||||||| | |||||
Sbjct: 23863 aatgatgatatgaaatctgttctgtcccttgatgatggtcgatggtctaagctggcagag 23922
Query: 826 gaatgcacctctacaccttctgcaagtctggtgggagaattatcccagttgaatatcaga 885
|||||| ||||| |||||||| ||||||| | |||||||||||| |||| ||||| |
Sbjct: 23923 gaatgcgcctctgtaccttctgttagtctggaagaagaattatcccaattgagtatcaaa 23982
Query: 886 cagccttcacccccaccagtcctggcaga 914
||||||||||| || |||||| |||||||
Sbjct: 23983 cagccttcacctcctccagtcttggcaga 24011
Score = 105 bits (53), Expect = 6e-19
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 1171 tgtgaagctacaaatgaagaagaactatttgaagttcaggacaagggctcactattcact 1230
|||||||| ||||||||||| ||| ||||||| ||||||||||||||||| || ||||||
Sbjct: 24661 tgtgaagcgacaaatgaagatgaattatttgatgttcaggacaagggctcgcttttcact 24720
Query: 1231 cttggttggattcatgtaagt 1251
|||||||||||||| ||||||
Sbjct: 24721 cttggttggattcacgtaagt 24741
Score = 91.7 bits (46), Expect = 9e-15
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 543 aaatctgccttttccaaaagaagagacactggctagacattcaatattagggcctaatgg 602
|||||| ||||| || |||||||| ||| | |||||||| || ||||| || ||||||||
Sbjct: 21696 aaatctccctttccctaaagaagaaacattagctagacactctatattgggacctaatgg 21755
Query: 603 gcttcatggacaatggaccgggcctgttgctgcagtcaaggt 644
||||||||| |||||||| ||||||||| ||||| |||||||
Sbjct: 21756 gcttcatgggcaatggactgggcctgttactgcaatcaaggt 21797
Score = 79.8 bits (40), Expect = 3e-11
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1107 gaaaaagagaacttttcatgtgtcaaccttaataattccaaagcagaaatctacatctga 1166
|||||||||||| ||| ||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 24452 gaaaaagagaaccttttatgtgactgccttgataattccaaagcagaaatctacatctga 24511
Query: 1167 ttca 1170
||||
Sbjct: 24512 ttca 24515
Score = 75.8 bits (38), Expect = 5e-10
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 944 ctccatcaagagttgctgatccaacaccaggacttgttatatcagaaaccggtcgttatc 1003
|||||||| |||||| ||||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 24032 ctccatcagaagttgcagatccaacaccaggacttgctgtctcagaaaccgggcgttatc 24091
Query: 1004 ataacttgcatgtt 1017
| ||||| ||||||
Sbjct: 24092 agaacttacatgtt 24105
Score = 73.8 bits (37), Expect = 2e-09
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 121 caggccaagatatatcgagacgagaagaacatcctcgacctgtatgtcatcctcctg 177
||||| |||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 20077 caggctaagatatatcgagacgagaataatctcgtcgacctgtatgtcatcctcctg 20133
Score = 61.9 bits (31), Expect = 8e-06
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 297 tgagcttgagtctctgaagccagttgtgaagcggcagctcgttgagcataacaga 351
|||||||||||| ||||||||||||||| ||||||| || |||||||||||||
Sbjct: 20480 tgagcttgagtcactgaagccagttgtgcagcggcaaatcactgagcataacaga 20534
>emb|AL773592.5 | Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete
sequence
Length = 219956
Score = 42.1 bits (21), Expect = 7.1
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1603 ttccatacacaatggaaggtggtgc 1627
||||| |||||||||||||||||||
Sbjct: 106890 ttccagacacaatggaaggtggtgc 106914
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 374,624,888
Number of extensions: 21289264
Number of successful extensions: 450780
Number of sequences better than 10.0: 64
Number of HSP's gapped: 450774
Number of HSP's successfully gapped: 127
Length of query: 1851
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1828
Effective length of database: 18,503,978,556
Effective search space: 33825272800368
Effective search space used: 33825272800368
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)