ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf75i15 |
|---|---|
| Clone Library Name | barley_pub |
>Q86SZ2:TPC6B_HUMAN Trafficking protein particle complex subunit 6B - Homo sapiens| (Human) Length = 158 Score = 132 bits (331), Expect = 2e-30 Identities = 67/139 (48%), Positives = 90/139 (64%) Frame = +2 Query: 239 RIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 418 ++E +GF+VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94 Query: 419 QDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPC 598 QDN FR LT++ S G + S L F CGLIRG L+NLGI Sbjct: 95 QDNKFRLLTQM-----------------SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKS 137 Query: 599 AVSADMSNLPACSFVVRIK 655 V+A++S++PAC F V I+ Sbjct: 138 IVTAEVSSMPACKFQVMIQ 156
>Q32L78:TPC6B_BOVIN Trafficking protein particle complex subunit 6B - Bos taurus| (Bovine) Length = 158 Score = 132 bits (331), Expect = 2e-30 Identities = 67/139 (48%), Positives = 90/139 (64%) Frame = +2 Query: 239 RIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 418 ++E +GF+VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL Sbjct: 35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94 Query: 419 QDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPC 598 QDN FR LT++ S G + S L F CGLIRG L+NLGI Sbjct: 95 QDNKFRLLTQM-----------------SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKS 137 Query: 599 AVSADMSNLPACSFVVRIK 655 V+A++S++PAC F V I+ Sbjct: 138 IVTAEVSSMPACKFQVMIQ 156
>Q9D289:TPC6B_MOUSE Trafficking protein particle complex subunit 6B - Mus musculus| (Mouse) Length = 158 Score = 130 bits (328), Expect = 5e-30 Identities = 66/139 (47%), Positives = 90/139 (64%) Frame = +2 Query: 239 RIEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 418 ++E++GF+VG L ER+T + RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL Sbjct: 35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94 Query: 419 QDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPC 598 QDN FR L ++ S G + S L F CGLIRG L+NLGI Sbjct: 95 QDNKFRLLIQL-----------------SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKS 137 Query: 599 AVSADMSNLPACSFVVRIK 655 V+A++S++PAC F V I+ Sbjct: 138 IVTAEVSSMPACKFQVMIQ 156
>Q78XR0:TPC6A_MOUSE Trafficking protein particle complex subunit 6A - Mus musculus| (Mouse) Length = 159 Score = 107 bits (268), Expect = 5e-23 Identities = 56/138 (40%), Positives = 80/138 (57%) Frame = +2 Query: 242 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 421 +E +GF+VG L ER +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ Sbjct: 37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96 Query: 422 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 601 DN F L + GS G + L F CGL+ GAL LG Sbjct: 97 DNSFPLLVTM----------------GS-GPQYLEEAPKFLAFTCGLLCGALHTLGFQSL 139 Query: 602 VSADMSNLPACSFVVRIK 655 V+A +++LPAC F V I+ Sbjct: 140 VTASVASLPACKFQVVIQ 157
>Q09784:YA95_SCHPO Uncharacterized protein C13G6.05c - Schizosaccharomyces pombe| (Fission yeast) Length = 245 Score = 107 bits (266), Expect = 8e-23 Identities = 52/136 (38%), Positives = 75/136 (55%) Frame = +2 Query: 242 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 421 +E+IGFQVG +++ER + R R T+ + ++F+C++ W +F+K +DNLKTN RG FVL Sbjct: 43 LESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLT 102 Query: 422 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 601 D +F W T++ + G AQ T+ YFP G IRG + G Sbjct: 103 DTYFYWFTKM---------------TAMTGTEMAQITTPYFYFPSGFIRGVVYTFGYSAQ 147 Query: 602 VSADMSNLPACSFVVR 649 V A NLP C F V+ Sbjct: 148 VIAQCPNLPTCIFHVK 163
>Q3T086:TPC6A_BOVIN Trafficking protein particle complex subunit 6A - Bos taurus| (Bovine) Length = 159 Score = 105 bits (262), Expect = 2e-22 Identities = 55/138 (39%), Positives = 78/138 (56%) Frame = +2 Query: 242 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 421 +E +GF+VG L ER E F + L+ +KF+CKD W +F KQ+D+L+TNH+GT+VLQ Sbjct: 37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQ 96 Query: 422 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 601 DN F L R+ + G + L F CGL+RG L+ LG+ Sbjct: 97 DNSFPLLVRM-----------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSL 139 Query: 602 VSADMSNLPACSFVVRIK 655 V+A ++ LPAC F V I+ Sbjct: 140 VTASVAALPACKFQVVIQ 157
>O75865:TPC6A_HUMAN Trafficking protein particle complex subunit 6A - Homo sapiens| (Human) Length = 159 Score = 102 bits (255), Expect = 2e-21 Identities = 55/137 (40%), Positives = 76/137 (55%) Frame = +2 Query: 242 IEAIGFQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 421 +E +GF+VG L ER E F + L+ +KF+CKD W +F+KQ+D+L+TNH+GT+VLQ Sbjct: 37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQ 96 Query: 422 DNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCA 601 DN F L + + G + L F CGL+RGAL LGI Sbjct: 97 DNSFPLLLPM-----------------ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESV 139 Query: 602 VSADMSNLPACSFVVRI 652 V+A ++ LP C F V I Sbjct: 140 VTASVAALPVCKFQVVI 156
>Q99394:TRS33_YEAST Transport protein particle 33 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 268 Score = 79.7 bits (195), Expect = 1e-14 Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Frame = +2 Query: 224 ELAAGRIEAIGFQVGHQLSERYTMERP-----RFTDHLEAIKFICKDFWSELFKKQIDNL 388 E R+ IGFQ+G +LSE + D L +KFIC+D W ++F KQIDNL Sbjct: 117 EKVLARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNL 176 Query: 389 KTNHRGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIR 568 KTNHRGTF L D +R + SL+ +N + + L P G+IR Sbjct: 177 KTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-------------LKMIEPFLEIPVGIIR 223 Query: 569 GALTNLG 589 G L++LG Sbjct: 224 GVLSSLG 230
>Q03337:TRS31_YEAST Transport protein particle 31 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 283 Score = 38.9 bits (89), Expect = 0.028 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 2/114 (1%) Frame = +2 Query: 275 LSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNL-KTNHRGT-FVLQDNHFRWLTR 448 LS T R R L+ ++FI WS LF D+L K++ R +++ DN Sbjct: 162 LSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNF------ 215 Query: 449 VSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCAVSA 610 P + EN S YF CG+I+G L N G PC V+A Sbjct: 216 ----PTLTQFIPGENVSCE-------------YFVCGIIKGFLFNAGFPCGVTA 252
>P34303:YKQ8_CAEEL Putative zinc finger protein C06E1.8 - Caenorhabditis elegans| Length = 397 Score = 32.7 bits (73), Expect = 2.0 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +2 Query: 440 LTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCAVSADMS 619 L + L A N D+ N++ + + L+ P LIR L NL P ++ + + Sbjct: 121 LLHIHLQTATNNNDSNNNNNSVIPHGVINRSCHLITDPFQLIRTPLLNLPTPQSLESSVP 180 Query: 620 NLPACSFVV 646 +LP S + Sbjct: 181 SLPIASIPI 189
>Q9C801:MOS2_ARATH Protein MOS2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 462 Score = 31.6 bits (70), Expect = 4.5 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -1 Query: 645 TTKEHAGRFDISAETAHGIPKFVRAPLIN---PHGKYKSM 535 T+KE FD S A+ IPK+V P+ N PH K K++ Sbjct: 30 TSKEFVTEFDPSKTLANSIPKYVIPPIENTWRPHKKMKNL 69
>Q47RQ0:LEPA_THEFY GTP-binding protein lepA - Thermobifida fusca (strain YX)| Length = 614 Score = 30.4 bits (67), Expect = 10.0 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -2 Query: 722 LSKILEP--QARFISDLFYFSQIMSLCAPRKNMLEGLTYLQRQHME 591 +++I EP +A ++ Y IM LC R+ +L+G+ YL +E Sbjct: 403 IAEIREPVVKATVLTPSDYVGPIMELCQGRRGVLDGMEYLSEDRVE 448 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 146,191,206 Number of extensions: 3048370 Number of successful extensions: 7470 Number of sequences better than 10.0: 12 Number of HSP's gapped: 7456 Number of HSP's successfully gapped: 12 Length of query: 297 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 185 Effective length of database: 69,965,399 Effective search space: 12943598815 Effective search space used: 12943598815 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
