ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf75h18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q4IL82:INO80_GIBZE Putative DNA helicase INO80 - Gibberella zeae... 35 1.2
2O57476:CDC37_CHICK Hsp90 co-chaperone Cdc37 - Gallus gallus (Chi... 33 4.6
3P48382:RFX5_HUMAN DNA-binding protein RFX5 - Homo sapiens (Human) 32 6.0
4Q00174:LAMA_DROME Laminin subunit alpha precursor - Drosophila m... 32 6.0
5Q9D2Q3:CJ088_MOUSE Uncharacterized protein C10orf88 homolog - Mu... 32 7.8
6P34110:VPS35_YEAST Vacuolar protein sorting-associated protein 3... 32 7.8

>Q4IL82:INO80_GIBZE Putative DNA helicase INO80 - Gibberella zeae (Fusarium graminearum)|
          Length = 1904
 Score = 34.7 bits (78), Expect = 1.2
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -1

Query: 1155 KEPRNSQIPSNHHETIWHHNLHAHEFQKPAYWAVSDEYLSNSPHVTTVNDFGRKLILLRI 976
            +E R+S+ P +HH    HH+ H  +   PA  AV+ E  + S +    N        LR 
Sbjct: 23   EEDRDSR-PHHHHRHHHHHHHHRRDGDLPA-GAVAGEAATASSNAGGANAHQHSTFSLRS 80

Query: 975  TSMEAAPPPITTP 937
               E  PPP ++P
Sbjct: 81   PKPEYRPPPFSSP 93



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>O57476:CDC37_CHICK Hsp90 co-chaperone Cdc37 - Gallus gallus (Chicken)|
          Length = 393

 Score = 32.7 bits (73), Expect = 4.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 1188 SKNPMNCKSYVKEPRNSQIPSNHHETIWHHNLHAHEFQKPAYWAVSDEYLSNSPHV 1021
            SK+  N K+  KE    Q    H   +  H      F     W  S +YLS++PH+
Sbjct: 131  SKSVFNVKAEEKEETEEQKEQKHKTFVERHEKQIKHFGMLRRWDDSQKYLSDNPHL 186



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>P48382:RFX5_HUMAN DNA-binding protein RFX5 - Homo sapiens (Human)|
          Length = 616

 Score = 32.3 bits (72), Expect = 6.0
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 61  PPQPASPGVGAVSLSSAVGELLRLVLSSHVAAPDPALPL 177
           PP P SP + A  LSS   ++  L LSS   AP  A+P+
Sbjct: 342 PPIPVSPPILAPRLSSGALKVATLPLSSRAGAPPAAVPI 380



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>Q00174:LAMA_DROME Laminin subunit alpha precursor - Drosophila melanogaster (Fruit fly)|
          Length = 3712

 Score = 32.3 bits (72), Expect = 6.0
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +1

Query: 1315 CSRSKEMSFERPEGVSCNL*DAPVLPILFPKPGCGAVVMHRQCRCVHLRRGEHCNSC 1485
            C   KE  +  P    CN   A V+       GCG+V +   C+C     G  CN C
Sbjct: 661  CDSCKEGFYNFPSCEDCNCDPAGVIDKF---AGCGSVPVGELCKCKERVTGRICNEC 714



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>Q9D2Q3:CJ088_MOUSE Uncharacterized protein C10orf88 homolog - Mus musculus (Mouse)|
          Length = 444

 Score = 32.0 bits (71), Expect = 7.8
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -2

Query: 1445 RHCLCMTTAPQPGFGKRIGSTGASYKLQLTPSGLSNDISLDLEQDIQHSFSLQAVRHSTE 1266
            +H + + ++P P    +  ST   ++  LTPS ++ ++   +++  Q S       H   
Sbjct: 235  KHLMALQSSPSPAVLDKASSTPFPFRTGLTPSAITENLKALIDKSAQPSGEGNTTNHDEG 294

Query: 1265 HL 1260
            HL
Sbjct: 295  HL 296



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>P34110:VPS35_YEAST Vacuolar protein sorting-associated protein 35 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 944

 Score = 32.0 bits (71), Expect = 7.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 507 TLCNPVVITSC*PPFNVLGSSTELSEVWFLNM*HKLHCIINPL 379
           ++C P++I+   PP NV  S T + EV+F     +   I++P+
Sbjct: 488 SICEPLIISRSGPPANVASSDTNVDEVFFNRHDEEESWILDPI 530


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 275,758,342
Number of extensions: 6046094
Number of successful extensions: 17367
Number of sequences better than 10.0: 6
Number of HSP's gapped: 17336
Number of HSP's successfully gapped: 6
Length of query: 548
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 430
Effective length of database: 68,319,629
Effective search space: 29377440470
Effective search space used: 29377440470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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