ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf72a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1036 gene, complete cds Length = 29663 Score = 125 bits (63), Expect = 4e-25 Identities = 148/175 (84%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 742 tagggagcatcatttgtgaagcaacattgtaa-acagaggcagaaggtggagcggcttcg 800 ||||||||||| |||||| |||| || || || |||||||||| |||||||||| ||||| Sbjct: 2875 tagggagcatcgtttgtggagcagcactgaaacacagaggcaggaggtggagcgtcttcg 2934 Query: 801 tcttgcacggagcttcgatagtgatgtcaagtcatgtttgatcgagaggtgctacgttgt 860 || |||||||||||||| | ||||||||| |||||| || |||| | |||||||||| | Sbjct: 2935 tcctgcacggagcttcggtggtgatgtcaggtcatgcctggtcgacacgtgctacgtttt 2994 Query: 861 gtcatgtatgttcaacaggtgctgcgcacgacacatctttcagagacttcatgtt 915 |||||| ||||| |||||||| ||||||||| ||||| ||||| |||| |||| Sbjct: 2995 gtcatgcctgttcggcaggtgctacgcacgacagatcttacagagtcttcgtgtt 3049
>emb|CT009587.1| Triticum turgidum Length = 229209 Score = 109 bits (55), Expect = 2e-20 Identities = 97/111 (87%) Strand = Plus / Minus Query: 788 tggagcggcttcgtcttgcacggagcttcgatagtgatgtcaagtcatgtttgatcgaga 847 |||||||||| |||||||||||||| ||| | | |||||||||||||| |||| ||| | Sbjct: 163180 tggagcggctaagtcttgcacggagcgtcggtggagatgtcaagtcatgcttgaccgaca 163121 Query: 848 ggtgctacgttgtgtcatgtatgttcaacaggtgctgcgcacgacacatct 898 |||||||||||||||||||| || || ||||||||| ||||||||| |||| Sbjct: 163120 ggtgctacgttgtgtcatgtctggtcgacaggtgctacgcacgacagatct 163070
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 105 bits (53), Expect = 3e-19 Identities = 269/339 (79%), Gaps = 4/339 (1%) Strand = Plus / Minus Query: 696 ggtcttccagatgaggtgatggcggcactgtggcatcgtttctttgtagggagcatcatt 755 |||||||||||| || |||||||||| || || |||||||| | | ||||||||| || Sbjct: 85654 ggtcttccagatcagacgatggcggcattgcggtgtcgtttctctcttgggagcatcgtt 85595 Query: 756 tgtgaagcaacattgtaa-acagaggcagaaggtggagcggcttcgtcttgcacggagct 814 |||| || | | || || | |||||||| |||||||||||||||||||||||||||||| Sbjct: 85594 tgtggagtagcgctggaagatagaggcaggaggtggagcggcttcgtcttgcacggagct 85535 Query: 815 tcgatagtgatgtcaagtcatgtttgatcgagaggtgctacgttgtgtcatgtatgttca 874 ||| | | ||||||||||||| || ||| |||||||||| | ||||||| |||||| Sbjct: 85534 tcggtggaaatgtcaagtcatgcctggccgacaggtgctacgctttgtcatgcatgttcg 85475 Query: 875 acaggtgctgcgcacgacacatctttcagagacttcatgttgagtcagctggtggcactt 934 ||||||| ||||| || ||||| || |||||||| | || ||| |||||| | |||| Sbjct: 85474 gtaggtgctacgcacaactaatcttccaaagacttcaagctgtgtcggctggtagtactt 85415 Query: 935 ---cgtatggtgttgtggtgtaccggtagcaaccacgatgtgcttagcagtttgcgcata 991 | |||||| || |||||||| | || ||| ||| ||||| |||| || ||| || Sbjct: 85414 ggcggcatggtgctgaggtgtaccagcggcgaccgcgacgtgctcagcaattcgcgtgta 85355 Query: 992 gggaggtggtgtccttgggcgtcgtggtggcatcgacgg 1030 ||||||||||| | || |||| ||||||||| ||||||| Sbjct: 85354 gggaggtggtgccatttggcgccgtggtggcgtcgacgg 85316
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 89.7 bits (45), Expect = 2e-14 Identities = 220/276 (79%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 774 acagaggcagaaggtggagcggcttcgtcttgcacggagcttcgatagtgatgtcaagtc 833 |||||| ||| || ||||||| ||| |||||||| ||||||||| | | ||||||||||| Sbjct: 177172 acagagccaggagatggagcgactttgtcttgcagggagcttcggtggagatgtcaagtc 177113 Query: 834 atgtttgatcgagaggtgctacgttgtgtcatgtat-gttcaacaggtgctgcgcacgac 892 ||| || || |||||||||| ||| |||||| | |||| |||||||| |||||||| Sbjct: 177112 atgcatggccggcaggtgctacgatgtatcatgtcttgttcggcaggtgctacgcacgac 177053 Query: 893 acatctttcagagacttcatgttgagtcagctggtggcactt--cgtatggtgttgtggt 950 ||||| || || |||| | || ||| |||||||| |||| || ||| || ||| Sbjct: 177052 ggatcttctagggatttcaagctgtgtcggctggtggtacttggcggcatgtgctgcggt 176993 Query: 951 gtaccggtagcaaccacgatgtgcttagcagtttgcgcatagggaggtggtgtccttggg 1010 ||| ||| |||||| ||||||||| ||||||||| || |||||| ||||||| ||||| Sbjct: 176992 gtatcggcggcaaccgcgatgtgctcagcagtttgtgcgcagggagatggtgtcgttggg 176933 Query: 1011 cgtcgtggtggcatcgacggatggctggactagcaa 1046 || |||||||| |||||||||||| ||||| |||| Sbjct: 176932 cgcagtggtggcgtcgacggatggccggactggcaa 176897
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 775 cagaggcagaaggtggagcggcttcgtcttgcacggagcttcgatagtgatgtcaagtca 834 ||||||||| |||||||||||||||| |||||||||||||||| | | |||||||||||| Sbjct: 36320 cagaggcaggaggtggagcggcttcgccttgcacggagcttcggtggagatgtcaagtca 36379 Query: 835 tgtttgatcgagaggtgctac 855 || ||| ||| ||||||||| Sbjct: 36380 tgcctgaccgacaggtgctac 36400 Score = 48.1 bits (24), Expect = 0.066 Identities = 45/52 (86%) Strand = Plus / Plus Query: 623 cgatgacggcgttctatgttgttacactgatgaaagcatcgtcgtttaacta 674 ||||| |||||||||| | ||||| |||||||||||||||||| |||||| Sbjct: 36145 cgatggcggcgttctacgccgttaccttgatgaaagcatcgtcgtgtaacta 36196
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 75.8 bits (38), Expect = 3e-10 Identities = 98/118 (83%) Strand = Plus / Minus Query: 776 agaggcagaaggtggagcggcttcgtcttgcacggagcttcgatagtgatgtcaagtcat 835 |||||| | ||||||||||||||||||||||||||| ||||| | ||||||||||||| Sbjct: 200988 agaggcgggaggtggagcggcttcgtcttgcacggaacttcggtgaagatgtcaagtcat 200929 Query: 836 gtttgatcgagaggtgctacgttgtgtcatgtatgttcaacaggtgctgcgcacgaca 893 | ||| ||| |||||||||| | |||||| || || |||||||| ||||||||| Sbjct: 200928 gcctgaccgaaaggtgctacgcttggtcatgcctggtcggcaggtgctacgcacgaca 200871 Score = 42.1 bits (21), Expect = 4.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 981 gtttgcgcatagggaggtggtgtccttgggcgtcgtggtgg 1021 |||||||| ||||||| |||| | |||||||||||||||| Sbjct: 200780 gtttgcgcgcagggaggaggtgccgttgggcgtcgtggtgg 200740
>emb|CT009735.1| Triticum aestivum Length = 187340 Score = 67.9 bits (34), Expect = 7e-08 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand = Plus / Plus Query: 774 acagaggcagaaggtggagcggcttcgtcttgcacggag-cttcgatagtgatgtcaagt 832 |||||||||| ||||||||||||||||| |||||| ||| |||||| | |||||||||| Sbjct: 185739 acagaggcaggaggtggagcggcttcgtattgcacagagttttcgatggagatgtcaagt 185798 Query: 833 catgtttgatcgagaggtgctacgttgtgtcatg 866 |||| || ||| |||||||||| | ||||||| Sbjct: 185799 catgcctggccgacaggtgctacgctatgtcatg 185832
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 992 gggaggtggtgtccttgggcgtcgtggtggcatcgacggatggctggact 1041 |||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 91211 gggaggtggtaccgttgggcgccgtggtggcgtcgacggatggctggact 91162
>gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, complete sequence Length = 218515 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 ctctcctcccttccatccctccatca 158 |||||||||||||||||| ||||||| Sbjct: 69053 ctctcctcccttccatccatccatca 69078
>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence Length = 196840 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 tcctcccttccatccctccatc 157 |||||||||||||||||||||| Sbjct: 11865 tcctcccttccatccctccatc 11886
>gb|AC118926.13| Mus musculus chromosome 5, clone RP23-323D23, complete sequence Length = 232698 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 131 ttctctcctcccttccatccctccatcacc 160 |||||||||||| ||| ||||||||||||| Sbjct: 93013 ttctctcctcccctccctccctccatcacc 92984
>gb|AC113507.12| Mus musculus chromosome 3, clone RP23-376O10, complete sequence Length = 210262 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 136 tcctcccttccatccctccatc 157 |||||||||||||||||||||| Sbjct: 34234 tcctcccttccatccctccatc 34213
>ref|XM_001208639.1| Aspergillus terreus NIH2624 predicted protein (ATEG_01274) mRNA, complete cds Length = 960 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 411 ggatctggtggatggtctgtt 431 ||||||||||||||||||||| Sbjct: 187 ggatctggtggatggtctgtt 167
>gb|AC187753.3| Pan troglodytes BAC clone CH251-669J7 from chromosome 7, complete sequence Length = 216210 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 tctctcctcccttccatccct 152 ||||||||||||||||||||| Sbjct: 1278 tctctcctcccttccatccct 1298
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 7936836 aacagaggcagaaggtggagc 7936856
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gcgacgtggaggatctggtgg 421 ||||||||||||||||||||| Sbjct: 467207 gcgacgtggaggatctggtgg 467227
>gb|BT025371.1| Bos taurus adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA, incomplete 5' cds Length = 1416 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 caaatccaattcacaaacatactca 49 |||||||||||||||||||| |||| Sbjct: 343 caaatccaattcacaaacattctca 319
>ref|NM_001075376.1| Bos taurus adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA gb|BC116115.1| Bos taurus adaptor-related protein complex 3, sigma 2 subunit, mRNA (cDNA clone MGC:139176 IMAGE:8089776), complete cds Length = 2187 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 caaatccaattcacaaacatactca 49 |||||||||||||||||||| |||| Sbjct: 367 caaatccaattcacaaacattctca 343
>gb|DQ366712.1| Uncultured Prochlorococcus marinus clone ASNC1363 genomic sequence Length = 37759 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 677 tagaaaaaatctagaatcggg 697 ||||||||||||||||||||| Sbjct: 21771 tagaaaaaatctagaatcggg 21791
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 677 tagaaaaaatctagaatcggg 697 ||||||||||||||||||||| Sbjct: 1192751 tagaaaaaatctagaatcggg 1192731
>gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete sequence Length = 184662 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 124328 aacagaggcagaaggtggagc 124348
>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence Length = 172617 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 890 gacacatctttcagagacttcatgttgag 918 ||||||||||||||||| |||||||||| Sbjct: 94815 gacacatctttcagagatatcatgttgag 94843
>gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, complete sequence Length = 232830 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 cttctctcctcccttccatccctcc 154 ||||||||||||||||| ||||||| Sbjct: 59479 cttctctcctcccttccctccctcc 59455
>gb|BT011392.1| Drosophila melanogaster AT28457 full insert cDNA Length = 2453 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 2275 aacagaggcagaaggtggagc 2295
>gb|AC122497.3| Mus musculus BAC clone RP24-404M1 from chromosome 19, complete sequence Length = 139762 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 cttctctcctcccttccatccctcc 154 ||||| ||||||||||||||||||| Sbjct: 47854 cttctttcctcccttccatccctcc 47878
>ref|NM_169452.1| Drosophila melanogaster dpr17 CG31361-RB, transcript variant B (dpr17), mRNA Length = 2665 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 2357 aacagaggcagaaggtggagc 2377
>ref|NM_169451.1| Drosophila melanogaster dpr17 CG31361-RA, transcript variant A (dpr17), mRNA Length = 3485 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 3177 aacagaggcagaaggtggagc 3197
>gb|AC004926.2| Homo sapiens PAC clone RP5-910H9 from 7, complete sequence Length = 153556 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 tctctcctcccttccatccct 152 ||||||||||||||||||||| Sbjct: 12214 tctctcctcccttccatccct 12194
>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence Length = 176916 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 890 gacacatctttcagagacttcatgttgag 918 ||||||||||||||||| |||||||||| Sbjct: 110604 gacacatctttcagagatatcatgttgag 110576
>gb|AC073683.3| Mus musculus chromosome 17 clone RP23-124G7, complete sequence Length = 213137 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 ccggggcagagggcggtggcggagg 210 ||||||||| ||||||||||||||| Sbjct: 176964 ccggggcagggggcggtggcggagg 176988
>gb|AY095087.1| Drosophila melanogaster RE56367 full insert cDNA Length = 3501 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 773 aacagaggcagaaggtggagc 793 ||||||||||||||||||||| Sbjct: 3176 aacagaggcagaaggtggagc 3196
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1010 gcgtcgtggtggcatcgacgg 1030 ||||||||||||||||||||| Sbjct: 1280749 gcgtcgtggtggcatcgacgg 1280769
>gb|AC124554.5| Mus musculus BAC clone RP23-245F10 from chromosome 3, complete sequence Length = 191481 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 ctctcctcccttccatccctc 153 ||||||||||||||||||||| Sbjct: 29671 ctctcctcccttccatccctc 29651
>gb|AC160088.2| Mus musculus BAC clone RP23-134J11 from chromosome 19, complete sequence Length = 221101 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 cttctctcctcccttccatccctcc 154 ||||| ||||||||||||||||||| Sbjct: 46084 cttctttcctcccttccatccctcc 46060
>emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 4/10 Length = 349459 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1010 gcgtcgtggtggcatcgacgg 1030 ||||||||||||||||||||| Sbjct: 235934 gcgtcgtggtggcatcgacgg 235954
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 677 tagaaaaaatctagaatcggg 697 ||||||||||||||||||||| Sbjct: 84379 tagaaaaaatctagaatcggg 84359
>emb|AL671935.30| Mouse DNA sequence from clone RP23-421J13 on chromosome X, complete sequence Length = 194258 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcccttccatccctccatc 157 ||||||||||||||||||||| Sbjct: 192795 cctcccttccatccctccatc 192775 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcccttccatccctccatc 157 ||||||||||||||||||||| Sbjct: 192848 cctcccttccatccctccatc 192828
>emb|CT010491.8| Mouse DNA sequence from clone RP23-308D12 on chromosome 17, complete sequence Length = 208070 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 ccggggcagagggcggtggcggagg 210 ||||||||| ||||||||||||||| Sbjct: 185622 ccggggcagggggcggtggcggagg 185598
>emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chromosome X, complete sequence Length = 52491 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcccttccatccctccatc 157 ||||||||||||||||||||| Sbjct: 537 cctcccttccatccctccatc 517 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcccttccatccctccatc 157 ||||||||||||||||||||| Sbjct: 590 cctcccttccatccctccatc 570 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 159,517,790 Number of extensions: 8399481 Number of successful extensions: 154120 Number of sequences better than 10.0: 39 Number of HSP's gapped: 154118 Number of HSP's successfully gapped: 45 Length of query: 1084 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1061 Effective length of database: 18,503,978,556 Effective search space: 19632721247916 Effective search space used: 19632721247916 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
