ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf75d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q4R657:TAF1B_MACFA TATA box-binding protein-associated factor RN... 34 2.1
2Q53T94:TAF1B_HUMAN TATA box-binding protein-associated factor RN... 33 3.5

>Q4R657:TAF1B_MACFA TATA box-binding protein-associated factor RNA polymerase I subunit|
           B - Macaca fascicularis (Crab eating macaque)
           (Cynomolgus monkey)
          Length = 588
 Score = 34.3 bits (77), Expect = 2.1
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 772 LPVYSTLSVCFLACHIAREAILPTDIYRWAMEGRLPYVAAF 894
           + V  TL+ C+L+    REAI  +D+ R+  E  +PY+ AF
Sbjct: 209 MTVPQTLAFCYLSLLWQREAITLSDLLRFVEEDHIPYINAF 249



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>Q53T94:TAF1B_HUMAN TATA box-binding protein-associated factor RNA polymerase I subunit|
           B - Homo sapiens (Human)
          Length = 588

 Score = 33.5 bits (75), Expect = 3.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 787 TLSVCFLACHIAREAILPTDIYRWAMEGRLPYVAAF 894
           TL+ C+L+    REAI  +D+ R+  E  +PY+ AF
Sbjct: 214 TLAFCYLSLLWQREAITLSDLLRFVEEDHIPYINAF 249


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 370,342,254
Number of extensions: 8403973
Number of successful extensions: 23044
Number of sequences better than 10.0: 2
Number of HSP's gapped: 22996
Number of HSP's successfully gapped: 2
Length of query: 688
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 568
Effective length of database: 67,771,039
Effective search space: 38493950152
Effective search space used: 38493950152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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