>Q16943:VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein -|
           Aplysia californica (California sea hare)
          Length = 260
 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +1

Query: 193 KELLGIEPL-ELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPR 369
           ++ L +EP  ELRF   F   ++  ++L+N TD  + FKVKTT+PK+YCVRPNSGI+ P+
Sbjct: 5   EQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPK 64

Query: 370 XXXXXXXXMQALKQAPPDMQCKDKFLVQSAVVPE 471
                   +Q     P +   K KF+VQS   P+
Sbjct: 65  TSIAVAVMLQPFNYDPNEKN-KHKFMVQSMYAPD 97

>Q10484:YDFC_SCHPO Uncharacterized protein C17C9.12 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 319

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = +1

Query: 229 FPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXXMQALK 408
           FP    + + C +EL N     + FKVKTT+PK+YCVRPN G +           +Q L 
Sbjct: 11  FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLD 70

Query: 409 QAP-PDMQCKDKFLVQSAVVP---EGTAVKDITGEMFKKESGNVVDEVRLKVVY 558
             P P  +C+DKFLVQS  +    +G  + DI  ++ K      + E +++ VY
Sbjct: 71  HEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQVSKAN----ISERKIRCVY 120

>O95292:VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C - Homo|
           sapiens (Human)
          Length = 243

 Score = 67.8 bits (164), Expect = 9e-11
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 193 KELLGIEPL-ELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPR 369
           +++L +EP  EL+F   F   ++ +++L N TD  + FKVKTT+P++YCVRPNSGI+   
Sbjct: 5   EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAG 64

Query: 370 XXXXXXXXMQALKQAPPDMQCKDKFLVQSAVVPEGTAVKDITGEMFKKE 516
                   +Q      P+ + K KF+VQS   P  T+  +   +  K E
Sbjct: 65  ASINVSVMLQPF-DYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPE 112

>Q9Z269:VAPB_RAT Vesicle-associated membrane protein-associated protein B - Rattus|
           norvegicus (Rat)
          Length = 243

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 193 KELLGIEPL-ELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPR 369
           +++L +EP  EL+F   F   ++ +++L N TD  + FKVKTT+P++YCVRPNSG++   
Sbjct: 5   EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAG 64

Query: 370 XXXXXXXXMQALKQAPPDMQCKDKFLVQSAVVPEGTAVKDITGEMFKKE 516
                   +Q      P+ + K KF+VQS   P  T+  +   +  K E
Sbjct: 65  ASLNVSVMLQPF-DYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPE 112

>Q5R601:VAPA_PONPY Vesicle-associated membrane protein-associated protein A - Pongo|
           pygmaeus (Orangutan)
          Length = 249

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%)
 Frame = +1

Query: 214 PLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXX 393
           P +L+F   F   ++ +++L N +D  + FKVKTT+P++YCVRPNSGI+ P         
Sbjct: 20  PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79

Query: 394 MQALKQAPPDMQCKDKFLVQSAVVPEGTA 480
           +Q      P+ + K KF+VQ+   P  T+
Sbjct: 80  LQPF-DYDPNEKSKHKFMVQTIFAPPNTS 107

>Q9P0L0:VAPA_HUMAN Vesicle-associated membrane protein-associated protein A - Homo|
           sapiens (Human)
          Length = 249

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%)
 Frame = +1

Query: 214 PLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXX 393
           P +L+F   F   ++ +++L N +D  + FKVKTT+P++YCVRPNSGI+ P         
Sbjct: 20  PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79

Query: 394 MQALKQAPPDMQCKDKFLVQSAVVPEGTA 480
           +Q      P+ + K KF+VQ+   P  T+
Sbjct: 80  LQPF-DYDPNEKSKHKFMVQTIFAPPNTS 107

>Q9QY76:VAPB_MOUSE Vesicle-associated membrane protein-associated protein B - Mus|
           musculus (Mouse)
          Length = 243

 Score = 66.2 bits (160), Expect = 3e-10
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 193 KELLGIEPL-ELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPR 369
           +++L +EP  EL+F   F   ++ +++L N TD  + FKVKTT P++YCVRPNSG++   
Sbjct: 5   EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAG 64

Query: 370 XXXXXXXXMQALKQAPPDMQCKDKFLVQSAVVPEGTAVKDITGEMFKKE 516
                   +Q      P+ + K KF+VQS   P  T+  +   +  K E
Sbjct: 65  ASLNVSVMLQPF-DYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPE 112

>Q0VCY1:VAPA_BOVIN Vesicle-associated membrane protein-associated protein A - Bos|
           taurus (Bovine)
          Length = 249

 Score = 65.1 bits (157), Expect = 6e-10
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = +1

Query: 214 PLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXX 393
           P +L+F   F   ++ +++L N +D  + FKVKTT+P++YCVRPNSGI+ P         
Sbjct: 20  PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM 79

Query: 394 MQALKQAPPDMQCKDKFLVQSAVVP 468
           +Q      P+ + K KF+VQ+   P
Sbjct: 80  LQPF-DYDPNEKSKHKFMVQTIFAP 103

>Q9WV55:VAPA_MOUSE Vesicle-associated membrane protein-associated protein A - Mus|
           musculus (Mouse)
          Length = 249

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = +1

Query: 214 PLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXX 393
           P +L+F   F   ++ +++L N +D  + FKVKTT+P++YCVRPNSGI+ P         
Sbjct: 20  PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79

Query: 394 MQALKQAPPDMQCKDKFLVQSAVVP 468
           +Q      P+ + K KF+VQ+   P
Sbjct: 80  LQPF-DYDPNEKSKHKFMVQTIFAP 103

>Q9Z270:VAPA_RAT Vesicle-associated membrane protein-associated protein A - Rattus|
           norvegicus (Rat)
          Length = 249

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 50/85 (58%)
 Frame = +1

Query: 214 PLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXX 393
           P +L+F   F   ++ +++L N +D  + FKVKTT+P++YCVRPNSG++ P         
Sbjct: 20  PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 79

Query: 394 MQALKQAPPDMQCKDKFLVQSAVVP 468
           +Q      P+ + K KF+VQ+   P
Sbjct: 80  LQPF-DYDPNEKSKHKFMVQTIFAP 103

>P40075:SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 244

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
 Frame = +1

Query: 208 IEPLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXX 387
           I P  L +     +Q +    ++N +D  +AFKVKTT+PK YCVRPN+ +V P       
Sbjct: 6   ISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQ 65

Query: 388 XXMQALKQAP-PDMQCKDKFLVQSAVVP---EGTAVKDITGEMFKKESGNVVDEVRLKVV 555
                L + P  D +C+DKFLV +   P    G AV D+  ++  +     + + ++KV 
Sbjct: 66  VIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISK-KIKVK 124

Query: 556 YV 561
           Y+
Sbjct: 125 YL 126

>Q6Q595:SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 175

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +1

Query: 208 IEPLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXX 387
           I P +L F     KQ +  ++L N  +  + FKV+T++P KYCVRPN  I+         
Sbjct: 3   IVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQ 62

Query: 388 XXMQALKQAPPD---MQCKDKFLVQSAVVP 468
                L ++  D    Q +DKFL+ +  +P
Sbjct: 63  IVFLGLPKSTADDEMDQKRDKFLIVTLPIP 92

>Q8NHP6:MSPD2_HUMAN Motile sperm domain-containing protein 2 - Homo sapiens (Human)|
          Length = 518

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
 Frame = +1

Query: 199 LLGIEPLE-LRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXX 375
           LL I P E L F      +    + LTN T + +AFKV+TT+P+KY V+P++    P   
Sbjct: 327 LLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDP--- 383

Query: 376 XXXXXXMQALKQAPPDMQCKDKFLVQSAVVPE--GTAVKDITGEMFKKESGNVVDEVRLK 549
                 +         +  +D+FL+ +A + +  GT   ++T + +K+   N V E RL+
Sbjct: 384 -GASVDIVVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELT-QFWKEVPRNKVMEHRLR 441

>Q9CWP6:MSPD2_MOUSE Motile sperm domain-containing protein 2 - Mus musculus (Mouse)|
          Length = 518

 Score = 39.7 bits (91), Expect = 0.025
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
 Frame = +1

Query: 271 LTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXXMQALKQAPPDMQCKDKFLV 450
           LTN T + +AFKV+TT+P+KY V+P++    P         +         +  +D+FL+
Sbjct: 352 LTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDP----GASIDIIVSPHGGLTVSAQDRFLI 407

Query: 451 QSAVVPE--GTAVKDITGEMFKKESGNVVDEVRLK 549
            +A + +  GT   +++ + +K+   N V E RL+
Sbjct: 408 MAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLR 441

>Q5UQ58:YR664_MIMIV Putative ankyrin repeat protein R664 - Mimivirus|
          Length = 162

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 637 GTNINYQDATRESDEPPLSSARKEPLEITSETSPLISRLTEERNSAIQQNNKLRE 801
           G N+NY D T  +D P LS   K     TSE++P   +L  ++ + +   NK  E
Sbjct: 35  GANVNYIDETNYNDTPILSVITK-----TSESNPETVKLLLDKGADVNYQNKYHE 84

>Q23246:SSPZC_CAEEL Sperm-specific protein ZC168.6 - Caenorhabditis elegans|
          Length = 107

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +1

Query: 271 LTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXXXXXXXMQALKQAPPDMQCKDKFLV 450
           +T+ +D  LAFKVK+++ + Y VRP  G V  +               PP    +DK ++
Sbjct: 22  ITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPGPPK---EDKIVI 75

Query: 451 QSAVVP 468
           Q A VP
Sbjct: 76  QYAEVP 81

>Q9HRW3:RAD50_HALSA DNA double-strand break repair rad50 ATPase - Halobacterium|
           salinarium (Halobacterium halobium)
          Length = 883

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 655 QDATRESDEPPLSSARKEPLEITSETSPLISRLTEERNSAIQQNNKLREELDLVRRE 825
           +DA+ E D   ++  R+   E   E +P +SRLTE+ +SA      L E  + +R E
Sbjct: 310 EDASAERDA--VADQREAVAERVREVAPAVSRLTEQADSAADDAATLDERAETLREE 364

>O45433:SSP32_CAEEL Sperm-specific class P protein 32 - Caenorhabditis elegans|
          Length = 107

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 27/90 (30%), Positives = 42/90 (46%)
 Frame = +1

Query: 199 LLGIEPLELRFPFEFMKQISCSMELTNRTDDYLAFKVKTTSPKKYCVRPNSGIVPPRXXX 378
           +L IEP    FP       S +  +T+  +  +AFKVK+++ + Y VRP  G V  R   
Sbjct: 1   MLTIEPPSATFP---ASGGSSTHTITSVNESRMAFKVKSSNNEHYRVRPVYGFVEAR--- 54

Query: 379 XXXXXMQALKQAPPDMQCKDKFLVQSAVVP 468
                 + ++   P     DK ++Q A VP
Sbjct: 55  -GKMKFEIIRLEGPVKD--DKIMLQYAEVP 81

>Q8N8S7:ENAH_HUMAN Protein enabled homolog - Homo sapiens (Human)|
          Length = 591

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 628 WSDGTNINYQDATRESDEPPLSSARKEPLEI--TSETSPLISRLTEERNSAIQQNNKLRE 801
           W D   +   +   + D    +SA    LE+  + ET P + R   +  + +Q N   +E
Sbjct: 80  WRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGPTLPRQNSQLPAQVQ-NGPSQE 138

Query: 802 ELDLVRREISKQ 837
           EL++ RR++ +Q
Sbjct: 139 ELEIQRRQLQEQ 150


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 188,313,748
Number of extensions: 3821396
Number of successful extensions: 12528
Number of sequences better than 10.0: 19
Number of HSP's gapped: 12418
Number of HSP's successfully gapped: 19
Length of query: 403
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 288
Effective length of database: 69,142,514
Effective search space: 19913044032
Effective search space used: 19913044032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)