>LOC_Os05g37330:12005.t03276:unspliced-genomic 60S acidic ribosomal protein P2B, putative, expressed|
          Length = 2267
 Score = 64.3 bits (134), Expect(4) = 3e-22
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +1 / +1

                                                     
Query: 49  FSCAAPR*FVVYTMKMIAAYLLAYLGGNSSPTAGDIKNILES 174
           F C   + F  +TMK+IAAYLLA LGGN+SP+A DIKNILES
Sbjct: 829 FICCLFKAFFNFTMKLIAAYLLAVLGGNTSPSADDIKNILES 954



 Score = 57.0 bits (118), Expect(4) = 3e-22
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = +3 / +2

                                                 
Query: 174  SWG*G**RKT*VPSC*TQG*GHHRSDCSWKGEVCRCA 284
            SW * **R+  VP+  T G GH+RSDC WKGEVC CA
Sbjct: 1268 SWR*S**REAGVPALRTGGQGHNRSDCCWKGEVCFCA 1378



 Score = 23.1 bits (44), Expect(4) = 3e-22
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1 / +3

                     
Query: 403  DMGFSLFD* 429
            DMGFSLFD*
Sbjct: 1866 DMGFSLFD* 1892



 Score = 22.6 bits (43), Expect(4) = 3e-22
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2 / +2

                        
Query: 527  CYFAWDNVYV*Y 562
            CYF  + VYV*Y
Sbjct: 2000 CYFLVETVYV*Y 2035



 Score = 47.8 bits (98), Expect(3) = 2e-12
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +3 / +3

                                            
Query: 81  LHDEDDRCLPARLPGWELFPDCR*HQEHPGISW 179
           LH+E DRCLPAR  GW+    C *H EH GI +
Sbjct: 861 LHNEADRCLPARCSGWKHLSIC**H*EHSGIRY 959



 Score = 45.1 bits (92), Expect(3) = 2e-12
 Identities = 24/39 (61%), Positives = 26/39 (66%)
 Frame = +2 / +1

                                                   
Query: 173  QLGLRLMKKNLSSFLLNSRVRTSQK*LQLEGRSLPLCLQ 289
            QL L+LM +  SS   N R RT QK*L LEGRSL LC Q
Sbjct: 1267 QLALKLMTRGWSSCSQNWRART*QK*LLLEGRSLLLCPQ 1383



 Score = 22.1 bits (42), Expect(3) = 2e-12
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2 / +1

                            
Query: 404  TWVSVYLTKHFSSTLY 451
            TWVS  LTK+    +Y
Sbjct: 1867 TWVSACLTKYLRLHIY 1914



 Score = 44.6 bits (91), Expect(2) = 1e-07
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2 / -2

                                
Query: 287  EGTAANFSLPAAITSVMSLP 228
            EGT ANFSLPAAITSVMSLP
Sbjct: 1381 EGTEANFSLPAAITSVMSLP 1322



 Score = 34.5 bits (69), Expect(2) = 1e-07
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -1 / -3

                                        
Query: 174 *FQDVLDVTGSRGRVPTQVGEQVGSDHLH 88
           *FQ+VL+V      V TQ  EQVGSD LH
Sbjct: 954 *FQNVLNVISRWRGVSTQNSEQVGSDQLH 868



 Score = 44.6 bits (91), Expect(2) = 5e-07
 Identities = 22/38 (57%), Positives = 25/38 (65%)
 Frame = -3 / -3

                                                  
Query: 286  KAQRQTSPFQLQSLL*CPYP*VQQEGT*VFLHQPQPQL 173
            +AQ+QTSPFQ QSLL CP P V + GT    H  Q QL
Sbjct: 1380 RAQKQTSPFQQQSLLLCPCPPVLRAGTPASRH*LQRQL 1267



 Score = 32.2 bits (64), Expect(2) = 5e-07
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3 / -2

                                
Query: 184 QPQLIPGCS*CHRQSGKSSHP 122
           Q  LIP CS*CH+Q  +  HP
Sbjct: 964 QKYLIPECS*CHQQMERCFHP 902



 Score = 39.6 bits (80), Expect(2) = 2e-05
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +2 / +2

                                             
Query: 83  TR*R*SLPTCSPTWVGTLPRLPVTSRTSWNQLGL 184
           ++* *SLPTCS  WV T   L +T RT WNQ+ L
Sbjct: 863 SQ*S*SLPTCSLFWVETPLHLLMTLRTFWNQVFL 964



 Score = 31.8 bits (63), Expect(2) = 2e-05
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1 / +3

                         
Query: 235  DITEVIAAGREKF 273
            DITEVIAAGREKF
Sbjct: 1329 DITEVIAAGREKF 1367



 Score = 35.9 bits (72), Expect = 0.28
 Identities = 15/20 (75%), Positives = 15/20 (75%)
 Frame = -1 / -1

                                
Query: 291  T*RHSGKLLPSSCNHFCDVL 232
            T* H  KLLPSS NHFC VL
Sbjct: 1385 T*GHRSKLLPSSSNHFCYVL 1326

>LOC_Os01g09510:12001.t00829:unspliced-genomic 60S acidic ribosomal protein P2A, putative, expressed|
          Length = 2137

 Score = 52.4 bits (108), Expect(3) = 3e-10
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1 / +3

                                           
Query: 79  VYTMKMIAAYLLAYLGGNSSPTAGDIKNILES 174
           ++ MK I+AYL+AYL GNSSPTA D+  ILES
Sbjct: 780 LFRMKFISAYLMAYLAGNSSPTAEDLTTILES 875



 Score = 28.6 bits (56), Expect(3) = 3e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1 / +1

                         
Query: 235  DITEVIAAGREKF 273
            DITE+IA GREKF
Sbjct: 1285 DITELIACGREKF 1323



 Score = 25.8 bits (50), Expect(3) = 3e-10
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1 / +3

                               
Query: 403  DMGFSLFD*ALQLHPLRSV 459
            DMGFSLFD* ++   L S+
Sbjct: 1674 DMGFSLFD*VMRSPLLSSI 1730



 Score = 39.6 bits (80), Expect(2) = 0.003
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = -2 / -3

                                 
Query: 287  EGTAANFSLPAAITSVMSLPL 225
            +GT ANFSLP A++SVMSLPL
Sbjct: 1337 DGTEANFSLPQAMSSVMSLPL 1275



 Score = 24.4 bits (47), Expect(2) = 0.003
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1 / -3

                                        
Query: 174 *FQDVLDVTGSRGRVPTQVGEQVGSDHLH 88
           * Q+   +  S   V +Q+G Q+G + LH
Sbjct: 875 *LQNRCQILRSGAGVASQIGHQIGRNELH 789



 Score = 26.3 bits (51), Expect(2) = 8.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3 / +2

                                 
Query: 81  LHDEDDRCLPARLPGWELFPDC 146
           + DE   CL   L GW+L P C
Sbjct: 782 VQDEVHFCLSDGLSGWQLQPHC 847



 Score = 25.4 bits (49), Expect(2) = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3 / +3

                          
Query: 234  GHHRSDCSWKGEVC 275
            GHH +   W+GEVC
Sbjct: 1284 GHH*AHRLWQGEVC 1325

>LOC_Os08g15180:12008.t01392:unspliced-genomic 60S acidic ribosomal protein P2A, putative|
          Length = 846

 Score = 51.0 bits (105), Expect(2) = 2e-07
 Identities = 18/35 (51%), Positives = 27/35 (77%)
 Frame = +1 / +1

                                              
Query: 76  VVYTMKMIAAYLLAYLGGNSSPTAGDIKNILESVG 180
           +  TM+ ++AYL+AY+GGN SP+  D++ IL SVG
Sbjct: 490 ITITMRFVSAYLMAYIGGNESPSKDDVRAILGSVG 594



 Score = 23.5 bits (45), Expect(2) = 2e-07
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1 / +1

                       
Query: 235 DITEVIAAGREK 270
           DI E+IAAGRE+
Sbjct: 649 DIPELIAAGRER 684

>LOC_Os02g32760:12002.t02919:unspliced-genomic 60S acidic ribosomal protein P2A, putative, expressed|
          Length = 3229

 Score = 42.3 bits (86), Expect(3) = 1e-06
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +1 / +3

                                         
Query: 88   MKMIAAYLLAYLGGNSSPTAGDIKNILES 174
            MK I+AYLLA L GN +P+A D+  ILES
Sbjct: 1296 MKFISAYLLATLAGNPNPSAEDLTTILES 1382



 Score = 29.9 bits (59), Expect(3) = 1e-06
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +1 / +1

                         
Query: 235  DITEVIAAGREKF 273
            DITE+IA+GREKF
Sbjct: 2404 DITEIIASGREKF 2442



 Score = 23.1 bits (44), Expect(3) = 1e-06
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1 / +2

                     
Query: 403  DMGFSLFD* 429
            DMGFSLFD*
Sbjct: 2933 DMGFSLFD* 2959



 Score = 32.7 bits (65), Expect = 2.6
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2 / -3

                               
Query: 284  GTAANFSLPAAITSVMSLP 228
            GT ANFS P AI SV+SLP
Sbjct: 2453 GTEANFSRPEAIISVISLP 2397

>LOC_Os07g14750:12007.t01338:unspliced-genomic 60S acidic ribosomal protein P2A, putative, expressed|
          Length = 453

 Score = 48.3 bits (99), Expect = 5e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +1 / +1

                                           
Query: 85  TMKMIAAYLLAYLGGNSSPTAGDIKNILESVG 180
           TM+ +AAYL+A +GGN+SPT  D++ IL +VG
Sbjct: 118 TMRFVAAYLMATIGGNASPTKDDVRAILGAVG 213

>LOC_Os07g28710:12007.t02561:unspliced-genomic 60S acidic ribosomal protein P2A, putative|
          Length = 330

 Score = 46.0 bits (94), Expect = 3e-04
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = +1 / +1

                                          
Query: 88  MKMIAAYLLAYLGGNSSPTAGDIKNILESVG 180
           M+ +AAYL+A +GGN+SPT  D++ IL +VG
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVG 93

>LOC_Os10g38970:12010.t03138:unspliced-genomic expressed protein|
          Length = 8867

 Score = 33.6 bits (67), Expect = 1.4
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1 / +3

                            
Query: 282 HSGKLLPSSCNHFCDVL 232
           HS  LL  +CNHFCDVL
Sbjct: 624 HSYDLLSRNCNHFCDVL 674

>LOC_Os09g39310:12009.t03397:unspliced-genomic expressed protein|
          Length = 2992

 Score = 33.1 bits (66), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3 / -2

                                      
Query: 199  FLHQPQPQLIPGCS*CHRQSGKSSHP 122
            FLHQ QPQL+  CS   +Q+ K   P
Sbjct: 1479 FLHQTQPQLLASCSSYQQQAPKHRRP 1402

>LOC_Os05g32880:12005.t02883:unspliced-genomic response regulator receiver domain containing protein, expressed|
          Length = 4529

 Score = 26.3 bits (51), Expect(2) = 3.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1 / -3

                           
Query: 511 RDLKFVLFCLGQCICL 558
           +DLK ++FC+  C+C+
Sbjct: 957 KDLKDIVFCVCVCVCV 910



 Score = 23.1 bits (44), Expect(2) = 3.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3 / -1

                   
Query: 567 VCACDCFC 590
           VC CDC C
Sbjct: 914 VCVCDCAC 891

>LOC_Os12g38870:12012.t03567:unspliced-genomic expressed protein|
          Length = 5637

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3 / +2

                                   
Query: 519 KVRAILLGTMYMFSTFVCACDCFC 590
           +VR +LL  +++ S+  C+C CFC
Sbjct: 431 EVRILLLPVVFLASSCCCSCFCFC 502

>LOC_Os11g28050:12011.t02419:unspliced-genomic hypothetical protein|
          Length = 3595

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3 / -3

                                 
Query: 426  LSTSAPPSTLCLP*YLSRVAW 488
            LS S  PS+LCL  Y SRV W
Sbjct: 1331 LSKSTAPSSLCLSLYASRVLW 1269

>LOC_Os10g35250:12010.t02820:unspliced-genomic ALG2-interacting protein X, putative, expressed|
          Length = 5475

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3 / -3

                                      
Query: 208  T*VFLHQPQPQLIPGCS*CHRQSGKS 131
            T +F H P+P LI  CS C  + GK+
Sbjct: 5251 TNMFCHIPKPSLIEACSSCSGEEGKN 5174

>LOC_Os05g45320:12005.t04020:unspliced-genomic ubiquitin domain containing 1, putative, expressed|
          Length = 2431

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3 / +3

                                   
Query: 516 PKVRAILLGTMYMFSTFVCACDCF 587
           PK+  +LL     F +FVC C CF
Sbjct: 225 PKLMVLLLSLP*CFDSFVCLCSCF 296

>LOC_Os03g57370:12003.t05004:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6122

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2 / +2

                                                             
Query: 20   STLRRRRPHASPVQLRGNS*FTR*R*SLPTCSPTWVGTLPRLPVTSRTS 166
            ST   R+ H++ + +   S*  R  *SLP   PT    +PRL   S TS
Sbjct: 884  STPSSRKTHSTKLIMLSTS*IRRRP*SLPRFQPTPQAPVPRLVAESLTS 1030

>LOC_Os02g43500:12002.t03935:unspliced-genomic expressed protein|
          Length = 3385

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3 / -3

                                   
Query: 57   CSSEVIRSLHDEDDRCLPARLPG 125
            CS + IRS H  D +C P R PG
Sbjct: 3260 CSIQAIRSAHH*DVKCCPIRKPG 3192

>LOC_Os01g73780:12001.t06658:unspliced-genomic chloroplast outer envelope 24 kD protein, putative, expressed|
          Length = 1949

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3 / +1

                                                
Query: 649  FFFRCKKHNSSELSINFSKLQKQSHAHTKVLNIYIV 542
            FF  C+K+    L IN SK Q+  H H+     Y+V
Sbjct: 1324 FFS*CRKYYC*YLLINDSKFQRNQHIHSDFREPYVV 1431

>LOC_Os01g15630:12001.t01414:unspliced-genomic C3H2C3 RING-finger protein, putative, expressed|
          Length = 5875

 Score = 31.8 bits (63), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3 / +3

                             
Query: 552  MFSTFVCACDCFCSFEK 602
            + ST+VC C C CSF +
Sbjct: 1458 VISTYVCGCHCVCSFSR 1508

>LOC_Os06g12710:12006.t01147:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 5892

 Score = 31.3 bits (62), Expect = 6.7
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2 / +2

                                                             
Query: 20   STLRRRRPHASPVQLRGNS*FTR*R*SLPTCSPTWVGTLPRLPVTSRTS 166
            ST   R+ H++ + +   S*  R  *SLP   PT   + PRL   S TS
Sbjct: 884  STPSSRKTHSTKLIMSSTS*TRRRP*SLPRFQPTPQASAPRLVAESLTS 1030

>LOC_Os05g02340:12005.t00133:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 4578

 Score = 31.3 bits (62), Expect = 6.7
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2 / +2

                                                            
Query: 20   STLRRRRPHASPVQLRGNS*FTR*R*SLPTCSPTWVGTLPRLPVTSRT 163
            STL  R+ H++ + +   S*  R  *SLP   PT     PRL   S T
Sbjct: 884  STLSSRKTHSTKLIMLSTS*TRRRP*SLPRFQPTPQAPAPRLVAESLT 1027

>LOC_Os02g46710:12002.t04258:unspliced-genomic conserved hypothetical protein|
          Length = 5366

 Score = 31.3 bits (62), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3 / +1

                                                 
Query: 540  GTMYMFSTFVCACDCFCSFEKLIDNSLELCFLHLKKK 650
            G  + FS+ +C  +C    E  +  S  L F HLKK+
Sbjct: 3955 GLEHFFSSIMCIPNCLLECESNVVRSCFLGFFHLKKR 4065

>LOC_Os11g33060:12011.t02902:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 3129

 Score = 30.9 bits (61), Expect = 9.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2 / -1

                                                
Query: 407  WVSVYLTKHFSSTLYALFTLVSVACGMVQQRLHNLE 514
            W+S + +KH SS+ + LF ++   C      L  +E
Sbjct: 2154 WLSAFFSKHTSSSSFCLFIMIP*GCLSSSHHLTKIE 2047

>LOC_Os02g49900:12002.t04574:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6126

 Score = 30.9 bits (61), Expect = 9.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2 / +2

                                                             
Query: 20   STLRRRRPHASPVQLRGNS*FTR*R*SLPTCSPTWVGTLPRLPVTSRTS 166
            ST   R+ H++ + +   S*  R  *SLP   PT    +PRL   S TS
Sbjct: 884  STPSSRKTHSTKLIMLSTS*TRRRP*SLPRFQPTPQAPVPRLVAESLTS 1030

>LOC_Os08g02340:12008.t00129:unspliced-genomic 60S acidic ribosomal protein P1, putative, expressed|
          Length = 1599

 Score = 30.9 bits (61), Expect = 9.3
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1 / +3

                         
Query: 397  DDDMGFSLFD*AL 435
            DDDMGFSLFD*A+
Sbjct: 1251 DDDMGFSLFD*AV 1289

>LOC_Os03g34300:12003.t03018:unspliced-genomic serine incorporator 3, putative, expressed|
          Length = 7078

 Score = 30.9 bits (61), Expect = 9.3
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1 / +2

                                                          
Query: 460  YPSICRVWHGTTASA*SRDLKFVLFCLGQCICLVPSYVRVTASAAL 597
            + SIC +W  T A      LK  +  LG  IC   SYV V  +  L
Sbjct: 2852 FRSICALWP*TCAGISHGSLKLRIAYLGH*ICRYKSYVLVARTHGL 2989


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 214,738,880
Number of extensions: 3131162
Number of successful extensions: 13391
Number of sequences better than 10.0: 24
Length of query: 218
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 170
Effective length of database: 52,912,542
Effective search space: 8995132140
Effective search space used: 8995132140
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)