ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf80m10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF470354.1| Triticum aestivum RING-H2 finger protein mRNA, partial cds Length = 378 Score = 613 bits (309), Expect = e-172 Identities = 338/348 (97%) Strand = Plus / Plus Query: 142 ctttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgc 201 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 ctttgcaatggcatctggaactgatgagaaagccaagatggagagtttgacatcgcctgc 86 Query: 202 agcctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctgga 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 87 agcctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgtcttga 146 Query: 262 ggctttctgtgagagtgatccttctgcattgacaggttgcaaacatgagttccatctcca 321 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 147 ggctttctgtgagagtgatccttccacattgacaggttgcaaacatgagttccatctcca 206 Query: 322 atgcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcag 381 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 207 atgcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctgtcag 266 Query: 382 tatgaaggatcctaccagtcaagagcttcttgaggcagtagagcgggagaggaatataag 441 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 267 tatgaaggatcctaccagtcaagagcttcttgaggcagtanagcgggagaggaatataag 326 Query: 442 aaccaatcaaacccggaatacgactatattccatcatcctgctcttgg 489 |||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct: 327 aaccaatcaaactcgaaatacgactatatttcatcatcctgctcttgg 374
>gb|AY323129.1| Oryza sativa (japonica cultivar-group) putative RING-H2 zinc finger protein (RHF) mRNA, complete cds Length = 1623 Score = 571 bits (288), Expect = e-159 Identities = 471/532 (88%) Strand = Plus / Plus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 131 ttgcaatggcatctggaactgatgagaaagccaagatggagggtttgacatcagctgcag 190 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| |||| Sbjct: 191 cctttgttgagggtgggattcaggatgcatgtgatgatgcatgtagtatctgccttgagg 250 Query: 264 ctttctgtgagagtgatccttctgcattgacaggttgcaaacatgagttccatctccaat 323 | |||||||||||||| ||||| ||||||| ||||||||||| |||||||| ||||||| Sbjct: 251 cgttctgtgagagtgacccttccacattgactggttgcaaacacgagttccacctccaat 310 Query: 324 gcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagta 383 ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 311 gcattcttgaatggtgtcagagaagttctcagtgtcctatgtgttggcagcctatcagtt 370 Query: 384 tgaaggatcctaccagtcaagagcttcttgaggcagtagagcgggagaggaatataagaa 443 ||||||||||||||||||||||||| || |||||||| ||||| || |||||| |||| | Sbjct: 371 tgaaggatcctaccagtcaagagctgctcgaggcagtggagcgtgaaaggaatgtaagga 430 Query: 444 ccaatcaaacccggaatacgactatattccatcatcctgctcttggcgatttcgaagtgc 503 |||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || | Sbjct: 431 ccaatcaaactcgaaatacaactatatttcatcatcctgctcttggagattttgaggttc 490 Query: 504 agcatttgcctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctag 563 ||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||| Sbjct: 491 agcatttacctgttgttggtaatgatgctgaacttgaagagcgtatattacagcacctag 550 Query: 564 ctgcttctgcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaacc 623 | || | || |||||||||||||||||||| | |||||||||||| || || ||| | Sbjct: 551 cagcagccgctgcaatgggaaggtcacaccaccttggtagaagagaaggacacaggggtc 610 Query: 624 gatctggctctcatggccgcccacagttctttgttttctctgcacatccaaa 675 | || ||||||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct: 611 gttccggctctcatggtcgtccacagttcttagttttttcttcgcatccaaa 662 Score = 406 bits (205), Expect = e-109 Identities = 402/467 (86%), Gaps = 3/467 (0%) Strand = Plus / Plus Query: 784 tgaagaagcaggcaaccaaagtccaggggtccttacctacgatgctgaacaagatgctgt 843 ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct: 771 tgaagaagcaggcaatcaaagtcctgggatgcttacctacgatgctgatcaagatgctgt 830 Query: 844 tgtttcatctggaaatagtacccccgtatccagtcctaggtttttcaacaggagacattc 903 |||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 831 tgtttcatctggaaatagtacccctgtatctagccctaggtttttcaacaggaggcattc 890 Query: 904 atctggacaatctactccagtaggtaatgacagggcagggccatcagatgttcagtcttt 963 |||| ||||| ||||||||| || ||||| || ||||| |||||| |||||||||| Sbjct: 891 cactgggcaatcaactccagtaaacaacgacagagctgggccttcagatcttcagtcttt 950 Query: 964 ctcagattctctgaagtcacgtttaaacgctgtctcctcaaagtacaaagaatctattac 1023 |||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| Sbjct: 951 ctcagactctctgaagtctcgcttaaatgctgtctctatgaagtacaaggaatctattac 1010 Query: 1024 aaaaagtacccgagggtggaaggagaggcttttttcacgtagctcatctgtgtctgatct 1083 ||||||||| ||||| ||||||||||| |||||||| |||| ||||||||| | ||||| Sbjct: 1011 aaaaagtactcgaggatggaaggagagacttttttcgcgtaattcatctgtggcagatct 1070 Query: 1084 tggttctgaagtgagacgagaagttaacaatggaattgcatctgtatcgaggatgatgga 1143 |||||||||||| ||| |||||||||| ||||||||| || ||||| ||||||||||| Sbjct: 1071 tggttctgaagtaagaagagaagttaatgctggaattgcgtccgtatcaaggatgatgga 1130 Query: 1144 gcgtttggaaactagaggaag---tggtagaccaagctatagcccaacaacatctgcttc 1200 |||| ||||||||||||| || ||||||| |||| || ||||| ||| ||| |||| Sbjct: 1131 gcgtctggaaactagaggtagtaatggtagaacaagtgatggcccagcaatatccacttc 1190 Query: 1201 tgaagtttgtcccactacagaaccaagcaatgagagggttactgaaa 1247 ||||||| ||||| ||||||| ||||||||||||| ||||| |||| Sbjct: 1191 tgaagttattcccagtacagaatcaagcaatgagagagttacagaaa 1237 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 1468 aatttgatgtattggtttgat 1488
>dbj|AK068493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D07, full insert sequence Length = 1689 Score = 571 bits (288), Expect = e-159 Identities = 471/532 (88%) Strand = Plus / Plus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 192 ttgcaatggcatctggaactgatgagaaagccaagatggagggtttgacatcagctgcag 251 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| |||| Sbjct: 252 cctttgttgagggtgggattcaggatgcatgtgatgatgcatgtagtatctgccttgagg 311 Query: 264 ctttctgtgagagtgatccttctgcattgacaggttgcaaacatgagttccatctccaat 323 | |||||||||||||| ||||| ||||||| ||||||||||| |||||||| ||||||| Sbjct: 312 cgttctgtgagagtgacccttccacattgactggttgcaaacacgagttccacctccaat 371 Query: 324 gcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagta 383 ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 372 gcattcttgaatggtgtcagagaagttctcagtgtcctatgtgttggcagcctatcagtt 431 Query: 384 tgaaggatcctaccagtcaagagcttcttgaggcagtagagcgggagaggaatataagaa 443 ||||||||||||||||||||||||| || |||||||| ||||| || |||||| |||| | Sbjct: 432 tgaaggatcctaccagtcaagagctgctcgaggcagtggagcgtgaaaggaatgtaagga 491 Query: 444 ccaatcaaacccggaatacgactatattccatcatcctgctcttggcgatttcgaagtgc 503 |||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || | Sbjct: 492 ccaatcaaactcgaaatacaactatatttcatcatcctgctcttggagattttgaggttc 551 Query: 504 agcatttgcctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctag 563 ||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||| Sbjct: 552 agcatttacctgttgttggtaatgatgctgaacttgaagagcgtatattacagcacctag 611 Query: 564 ctgcttctgcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaacc 623 | || | || |||||||||||||||||||| | |||||||||||| || || ||| | Sbjct: 612 cagcagccgctgcaatgggaaggtcacaccaccttggtagaagagaaggacacaggggtc 671 Query: 624 gatctggctctcatggccgcccacagttctttgttttctctgcacatccaaa 675 | || ||||||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct: 672 gttccggctctcatggtcgtccacagttcttagttttttcttcgcatccaaa 723 Score = 398 bits (201), Expect = e-107 Identities = 401/467 (85%), Gaps = 3/467 (0%) Strand = Plus / Plus Query: 784 tgaagaagcaggcaaccaaagtccaggggtccttacctacgatgctgaacaagatgctgt 843 ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct: 832 tgaagaagcaggcaatcaaagtcctgggatgcttacctacgatgctgatcaagatgctgt 891 Query: 844 tgtttcatctggaaatagtacccccgtatccagtcctaggtttttcaacaggagacattc 903 |||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 892 tgtttcatctggaaatagtacccctgtatctagccctaggtttttcaacaggaggcattc 951 Query: 904 atctggacaatctactccagtaggtaatgacagggcagggccatcagatgttcagtcttt 963 |||| ||||| ||||||||| || ||||| || ||||| |||||| |||||||||| Sbjct: 952 cactgggcaatcaactccagtaaacaacgacagagctgggccttcagatcttcagtcttt 1011 Query: 964 ctcagattctctgaagtcacgtttaaacgctgtctcctcaaagtacaaagaatctattac 1023 |||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| Sbjct: 1012 ctcagactctctgaagtctcgcttaaatgctgtctctatgaagtacaaggaatctattac 1071 Query: 1024 aaaaagtacccgagggtggaaggagaggcttttttcacgtagctcatctgtgtctgatct 1083 ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| | ||||| Sbjct: 1072 aaaaagtactcgaggatggaaggagagacttttttcgcgtcattcatctgtggcagatct 1131 Query: 1084 tggttctgaagtgagacgagaagttaacaatggaattgcatctgtatcgaggatgatgga 1143 |||||||||||| ||| |||||||||| |||||||||||| ||||| |||||||||| Sbjct: 1132 tggttctgaagtaagaagagaagttaatgctggaattgcatccgtatcaaggatgatggg 1191 Query: 1144 gcgtttggaaactagaggaag---tggtagaccaagctatagcccaacaacatctgcttc 1200 |||| ||||||||||||| || ||||||| |||| || ||||| ||| ||| |||| Sbjct: 1192 gcgtctggaaactagaggtagtaatggtagaacaagtgatggcccagcaatatccacttc 1251 Query: 1201 tgaagtttgtcccactacagaaccaagcaatgagagggttactgaaa 1247 ||||||| ||||| ||||||| ||||||||||||| ||||| |||| Sbjct: 1252 tgaagttattcccagtacagaatcaagcaatgagagagttacagaaa 1298 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 1531 aatttgatgtattggtttgat 1551
>gb|BT018556.1| Zea mays clone EL01N0439F08.d mRNA sequence Length = 1703 Score = 549 bits (277), Expect = e-152 Identities = 477/543 (87%), Gaps = 3/543 (0%) Strand = Plus / Plus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| | ||||||||||| ||| ||||| ||| |||||||||| |||||| Sbjct: 112 ttgcaatggcatctgtaactgatgagacagctaagattgagggtttgacatctgctgcag 171 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| |||||||| | ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 172 cctttgtggagggtggcattcaggacgcatgtgatgatgcatgcagcatttgccttgagg 231 Query: 264 ctttctgtgagagtgatccttctgcattgacaggttgcaaacatgagttccatctccaat 323 |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| Sbjct: 232 ctttctgtgagagtgacccttctgcattgactggctgcaaacatgagttccatctccaat 291 Query: 324 gcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagta 383 |||||||||||||||| || |||||||| |||||||| ||||| ||||||||||| | || Sbjct: 292 gcattcttgaatggtgccagagaagttcacagtgcccaatgtgttggcagcctattacta 351 Query: 384 tgaaggatcctaccagtcaagagcttcttgaggcagtagagcgggagaggaatataagaa 443 ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct: 352 tgaaggatcctaccagtcaggagctgcttgaggcagtagagcgtgagaggaatataagaa 411 Query: 444 ccaatcaaacccggaatacgactatattccatcatcctgctcttggcgatttcgaagtgc 503 | |||||||| ||||| || |||||||| ||||||||||||||||| ||||| || ||| Sbjct: 412 ctaatcaaactcggaacacaactatatttcatcatcctgctcttggggattttgagctgc 471 Query: 504 agcatttgcctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctag 563 ||||| |||| |||||||||||||||||| |||||||||||||||||||| || |||| Sbjct: 472 agcatctgcc---tgttggtaatgatgctgagcttgaagagcgtatactgcagcatctag 528 Query: 564 ctgcttctgcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaacc 623 ||||| |||| |||||||||||| ||||||| | ||| ||||| | ||||| ||| | Sbjct: 529 ctgctgctgctgcaatgggaagggcacaccatcttggaagaaggcatgggcacaggggac 588 Query: 624 gatctggctctcatggccgcccacagttctttgttttctctgcacatccaaatactcctt 683 |||||||||||||||| || ||||| ||| | ||||||||| |||| |||||| | |||| Sbjct: 589 gatctggctctcatggtcgtccacatttcctagttttctctacacaaccaaattcacctt 648 Query: 684 ctg 686 ||| Sbjct: 649 ctg 651 Score = 291 bits (147), Expect = 4e-75 Identities = 380/459 (82%), Gaps = 9/459 (1%) Strand = Plus / Plus Query: 797 aaccaaagtccaggggtccttacctacgatgctgaacaagatgctgttgtttcatctgga 856 ||||||||||| ||| | |||||||||||||||||||| |||||||| ||||| || ||| Sbjct: 765 aaccaaagtcctgggatgcttacctacgatgctgaacaggatgctgtcgtttcttccgga 824 Query: 857 aatagtacccccgtatccagtcctaggtttttcaacaggagacattcatctggacaatct 916 ||||| || || ||||| |||||||||||||| ||||||||||| || ||||||| || Sbjct: 825 aatagcactcctgtatcgagtcctaggttttttaacaggagacactccactggacagtca 884 Query: 917 actccagtaggtaatgacagggcagggccatcagatgttcagtctttctcagattctctg 976 ||||||| ||||||| |||||||| ||| |||||||||||||||| || ||| Sbjct: 885 actccag---------acagggctgggccatcggatattcagtctttctcagactccctg 935 Query: 977 aagtcacgtttaaacgctgtctcctcaaagtacaaagaatctattacaaaaagtacccga 1036 ||||| || ||||| || ||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 936 aagtcccgcttaaatgccgtctctatgaagtacaaagaatctattacaaagagtactcga 995 Query: 1037 gggtggaaggagaggcttttttcacgtagctcatctgtgtctgatcttggttctgaagtg 1096 |||||||||||||| | |||||||||| ||||| ||| | |||||||||||||||||| Sbjct: 996 gggtggaaggagagattgttttcacgtaattcatccgtggcggatcttggttctgaagtg 1055 Query: 1097 agacgagaagttaacaatggaattgcatctgtatcgaggatgatggagcgtttggaaact 1156 ||| |||||||||| ||||||||| || ||||| |||||||||||||| |||||||| Sbjct: 1056 agaagagaagttaatgctggaattgcgtccgtatcacggatgatggagcgtctggaaact 1115 Query: 1157 agaggaagtggtagaccaagctatagcccaacaacatctgcttctgaagtttgtcccact 1216 ||||||| | | ||| |||| ||||||| || |||| ||||||||||| || || Sbjct: 1116 agaggaaatagcagaacaagtgatagcccggcagcatccacttctgaagttccccctgct 1175 Query: 1217 acagaaccaagcaatgagagggttactgaaagtaactct 1255 |||||| |||||||||| |||||||| || || |||||| Sbjct: 1176 acagaatcaagcaatgaaagggttacagagagcaactct 1214
>ref|NM_001074658.1| Oryza sativa (japonica cultivar-group) Os11g0572500 (Os11g0572500) mRNA, complete cds Length = 1687 Score = 547 bits (276), Expect = e-152 Identities = 469/532 (88%), Gaps = 1/532 (0%) Strand = Plus / Plus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 191 ttgcaatggcatctggaactgatgagaaagccaagatggagggtttgacatcagctgcag 250 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| |||| Sbjct: 251 cctttgttgagggtgggattcaggatgcatgtgatgatgcatgtagtatctgccttgagg 310 Query: 264 ctttctgtgagagtgatccttctgcattgacaggttgcaaacatgagttccatctccaat 323 | |||||||||||||| ||||| ||||||| ||||||||||| |||||||| ||||||| Sbjct: 311 cgttctgtgagagtgacccttccacattgactggttgcaaacacgagttccacctccaat 370 Query: 324 gcattcttgaatggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagta 383 ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 371 gcattcttgaatggtgtcagagaagttctcagtgtcctatgtgttggcagcctatcagtt 430 Query: 384 tgaaggatcctaccagtcaagagcttcttgaggcagtagagcgggagaggaatataagaa 443 |||||||||||||||| ||| |||| || |||||||| ||||| || |||||| |||| | Sbjct: 431 tgaaggatcctaccaggcaa-agctgctcgaggcagtggagcgtgaaaggaatgtaagga 489 Query: 444 ccaatcaaacccggaatacgactatattccatcatcctgctcttggcgatttcgaagtgc 503 |||||||||| || ||||| |||||||| ||||||||||||||||| ||||| || || | Sbjct: 490 ccaatcaaactcgaaatacaactatatttcatcatcctgctcttggagattttgaggttc 549 Query: 504 agcatttgcctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctag 563 ||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||| Sbjct: 550 agcatttacctgttgttggtaatgatgctgaacttgaagagcgtatattacagcacctag 609 Query: 564 ctgcttctgcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaacc 623 | || | || |||||||||||||||||||| | |||||||||||| || || ||| | Sbjct: 610 cagcagccgctgcaatgggaaggtcacaccaccttggtagaagagaaggacacaggggtc 669 Query: 624 gatctggctctcatggccgcccacagttctttgttttctctgcacatccaaa 675 | || ||||||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct: 670 gttccggctctcatggtcgtccacagttcttagttttttcttcgcatccaaa 721 Score = 406 bits (205), Expect = e-109 Identities = 402/467 (86%), Gaps = 3/467 (0%) Strand = Plus / Plus Query: 784 tgaagaagcaggcaaccaaagtccaggggtccttacctacgatgctgaacaagatgctgt 843 ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct: 830 tgaagaagcaggcaatcaaagtcctgggatgcttacctacgatgctgatcaagatgctgt 889 Query: 844 tgtttcatctggaaatagtacccccgtatccagtcctaggtttttcaacaggagacattc 903 |||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| Sbjct: 890 tgtttcatctggaaatagtacccctgtatctagccctaggtttttcaacaggaggcattc 949 Query: 904 atctggacaatctactccagtaggtaatgacagggcagggccatcagatgttcagtcttt 963 |||| ||||| ||||||||| || ||||| || ||||| |||||| |||||||||| Sbjct: 950 cactgggcaatcaactccagtaaacaacgacagagctgggccttcagatcttcagtcttt 1009 Query: 964 ctcagattctctgaagtcacgtttaaacgctgtctcctcaaagtacaaagaatctattac 1023 |||||| ||||||||||| || ||||| |||||||| |||||||| ||||||||||| Sbjct: 1010 ctcagactctctgaagtctcgcttaaatgctgtctctatgaagtacaaggaatctattac 1069 Query: 1024 aaaaagtacccgagggtggaaggagaggcttttttcacgtagctcatctgtgtctgatct 1083 ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| | ||||| Sbjct: 1070 aaaaagtactcgaggatggaaggagagacttttttcgcgtcattcatctgtggcagatct 1129 Query: 1084 tggttctgaagtgagacgagaagttaacaatggaattgcatctgtatcgaggatgatgga 1143 |||||||||||| ||| |||||||||| |||||||||||| ||||| ||||||||||| Sbjct: 1130 tggttctgaagtaagaagagaagttaatgctggaattgcatccgtatcaaggatgatgga 1189 Query: 1144 gcgtttggaaactagaggaag---tggtagaccaagctatagcccaacaacatctgcttc 1200 |||| ||||||||||||| || ||||||| |||| || ||||| ||| ||| |||| Sbjct: 1190 gcgtctggaaactagaggtagtaatggtagaacaagtgatggcccagcaatatccacttc 1249 Query: 1201 tgaagtttgtcccactacagaaccaagcaatgagagggttactgaaa 1247 ||||||| ||||| ||||||| ||||||||||||| ||||| |||| Sbjct: 1250 tgaagttattcccagtacagaatcaagcaatgagagagttacagaaa 1296 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 1529 aatttgatgtattggtttgat 1549
>dbj|AK104853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B04, full insert sequence Length = 742 Score = 266 bits (134), Expect = 2e-67 Identities = 307/364 (84%), Gaps = 3/364 (0%) Strand = Plus / Plus Query: 887 ttcaacaggagacattcatctggacaatctactccagtaggtaatgacagggcagggcca 946 ||||||||||| ||||| |||| ||||| ||||||||| || ||||| || ||||| Sbjct: 1 ttcaacaggaggcattccactgggcaatcaactccagtaaacaacgacagagctgggcct 60 Query: 947 tcagatgttcagtctttctcagattctctgaagtcacgtttaaacgctgtctcctcaaag 1006 |||||| |||||||||||||||| ||||||||||| || ||||| |||||||| ||| Sbjct: 61 tcagatcttcagtctttctcagactctctgaagtctcgcttaaatgctgtctctatgaag 120 Query: 1007 tacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtagc 1066 ||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 121 tacaaggaatctattacaaaaagtactcgaggatggaaggagagacttttttcgcgtcat 180 Query: 1067 tcatctgtgtctgatcttggttctgaagtgagacgagaagttaacaatggaattgcatct 1126 ||||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 181 tcatctgtggcagatcttggttctgaagtaagaagagaagttaatgctggaattgcatcc 240 Query: 1127 gtatcgaggatgatggagcgtttggaaactagaggaag---tggtagaccaagctatagc 1183 ||||| ||||||||||||||| ||||||||||||| || ||||||| |||| || || Sbjct: 241 gtatcaaggatgatggagcgtctggaaactagaggtagtaatggtagaacaagtgatggc 300 Query: 1184 ccaacaacatctgcttctgaagtttgtcccactacagaaccaagcaatgagagggttact 1243 ||| ||| ||| ||||||||||| ||||| ||||||| ||||||||||||| ||||| Sbjct: 301 ccagcaatatccacttctgaagttattcccagtacagaatcaagcaatgagagagttaca 360 Query: 1244 gaaa 1247 |||| Sbjct: 361 gaaa 364 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 597 aatttgatgtattggtttgat 617
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 196 bits (99), Expect = 2e-46 Identities = 209/245 (85%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 |||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 20627181 gtacaaggaatctattacaaaaagtactcgaggatggaaggagagacttttttcgcgtca 20627122 Query: 1066 ctcatctgtgtctgatcttggttctgaagtgagacgagaagttaacaatggaattgcatc 1125 ||||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 20627121 ttcatctgtggcagatcttggttctgaagtaagaagagaagttaatgctggaattgcatc 20627062 Query: 1126 tgtatcgaggatgatggagcgtttggaaactagaggaag---tggtagaccaagctatag 1182 ||||| ||||||||||||||| ||||||||||||| || ||||||| |||| || | Sbjct: 20627061 cgtatcaaggatgatggagcgtctggaaactagaggtagtaatggtagaacaagtgatgg 20627002 Query: 1183 cccaacaacatctgcttctgaagtttgtcccactacagaaccaagcaatgagagggttac 1242 |||| ||| ||| ||||||||||| ||||| ||||||| ||||||||||||| ||||| Sbjct: 20627001 cccagcaatatccacttctgaagttattcccagtacagaatcaagcaatgagagagttac 20626942 Query: 1243 tgaaa 1247 |||| Sbjct: 20626941 agaaa 20626937 Score = 186 bits (94), Expect = 2e-43 Identities = 130/142 (91%) Strand = Plus / Minus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 20629651 ttgcaatggcatctggaactgatgagaaagccaagatggagggtttgacatcagctgcag 20629592 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| |||| Sbjct: 20629591 cctttgttgagggtgggattcaggatgcatgtgatgatgcatgtagtatctgccttgagg 20629532 Query: 264 ctttctgtgagagtgatccttc 285 | |||||||||||||| ||||| Sbjct: 20629531 cgttctgtgagagtgacccttc 20629510 Score = 159 bits (80), Expect = 4e-35 Identities = 104/112 (92%) Strand = Plus / Minus Query: 784 tgaagaagcaggcaaccaaagtccaggggtccttacctacgatgctgaacaagatgctgt 843 ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct: 20627571 tgaagaagcaggcaatcaaagtcctgggatgcttacctacgatgctgatcaagatgctgt 20627512 Query: 844 tgtttcatctggaaatagtacccccgtatccagtcctaggtttttcaacagg 895 |||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 20627511 tgtttcatctggaaatagtacccctgtatctagccctaggtttttcaacagg 20627460 Score = 135 bits (68), Expect = 6e-28 Identities = 140/164 (85%) Strand = Plus / Minus Query: 512 cctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctagctgcttct 571 ||||||||||||||||||||||||||||||||||||||| | || |||||||| || | Sbjct: 20627843 cctgttgttggtaatgatgctgaacttgaagagcgtatattacagcacctagcagcagcc 20627784 Query: 572 gcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaaccgatctggc 631 || |||||||||||||||||||| | |||||||||||| || || ||| || || ||| Sbjct: 20627783 gctgcaatgggaaggtcacaccaccttggtagaagagaaggacacaggggtcgttccggc 20627724 Query: 632 tctcatggccgcccacagttctttgttttctctgcacatccaaa 675 |||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct: 20627723 tctcatggtcgtccacagttcttagttttttcttcgcatccaaa 20627680 Score = 103 bits (52), Expect = 2e-18 Identities = 97/112 (86%) Strand = Plus / Minus Query: 397 cagtcaagagcttcttgaggcagtagagcgggagaggaatataagaaccaatcaaacccg 456 |||||||||||| || |||||||| ||||| || |||||| |||| ||||||||||| || Sbjct: 20628060 cagtcaagagctgctcgaggcagtggagcgtgaaaggaatgtaaggaccaatcaaactcg 20628001 Query: 457 gaatacgactatattccatcatcctgctcttggcgatttcgaagtgcagcat 508 ||||| |||||||| ||||||||||||||||| ||||| || || |||||| Sbjct: 20628000 aaatacaactatatttcatcatcctgctcttggagattttgaggttcagcat 20627949 Score = 97.6 bits (49), Expect = 1e-16 Identities = 64/69 (92%) Strand = Plus / Minus Query: 336 ggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||| Sbjct: 20628222 ggtgtcagagaagttctcagtgtcctatgtgttggcagcctatcagtttgaaggatccta 20628163 Query: 396 ccagtcaag 404 |||| |||| Sbjct: 20628162 ccaggcaag 20628154 Score = 79.8 bits (40), Expect = 3e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 892 caggagacattcatctggacaatctactccagtaggtaatgacagggcagggccatcaga 951 |||||| ||||| |||| ||||| ||||||||| || ||||| || ||||| ||||| Sbjct: 20627380 caggaggcattccactgggcaatcaactccagtaaacaacgacagagctgggccttcaga 20627321 Query: 952 tgttcagtctttctcagattctctgaagtcacgtttaaacgctgtctc 999 | |||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 20627320 tcttcagtctttctcagactctctgaagtctcgcttaaatgctgtctc 20627273 Score = 73.8 bits (37), Expect = 2e-09 Identities = 46/49 (93%) Strand = Plus / Minus Query: 290 ttgacaggttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 20629421 ttgactggttgcaaacacgagttccacctccaatgcattcttgaatggt 20629373 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 20626346 aatttgatgtattggtttgat 20626326
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 196 bits (99), Expect = 2e-46 Identities = 209/245 (85%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 |||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 62189 gtacaaggaatctattacaaaaagtactcgaggatggaaggagagacttttttcgcgtca 62130 Query: 1066 ctcatctgtgtctgatcttggttctgaagtgagacgagaagttaacaatggaattgcatc 1125 ||||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct: 62129 ttcatctgtggcagatcttggttctgaagtaagaagagaagttaatgctggaattgcatc 62070 Query: 1126 tgtatcgaggatgatggagcgtttggaaactagaggaag---tggtagaccaagctatag 1182 ||||| ||||||||||||||| ||||||||||||| || ||||||| |||| || | Sbjct: 62069 cgtatcaaggatgatggagcgtctggaaactagaggtagtaatggtagaacaagtgatgg 62010 Query: 1183 cccaacaacatctgcttctgaagtttgtcccactacagaaccaagcaatgagagggttac 1242 |||| ||| ||| ||||||||||| ||||| ||||||| ||||||||||||| ||||| Sbjct: 62009 cccagcaatatccacttctgaagttattcccagtacagaatcaagcaatgagagagttac 61950 Query: 1243 tgaaa 1247 |||| Sbjct: 61949 agaaa 61945 Score = 186 bits (94), Expect = 2e-43 Identities = 130/142 (91%) Strand = Plus / Minus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 64659 ttgcaatggcatctggaactgatgagaaagccaagatggagggtttgacatcagctgcag 64600 Query: 204 cctttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggagg 263 ||||||| ||||||||| | |||||||||||||||||||||||||| || ||||| |||| Sbjct: 64599 cctttgttgagggtgggattcaggatgcatgtgatgatgcatgtagtatctgccttgagg 64540 Query: 264 ctttctgtgagagtgatccttc 285 | |||||||||||||| ||||| Sbjct: 64539 cgttctgtgagagtgacccttc 64518 Score = 159 bits (80), Expect = 4e-35 Identities = 104/112 (92%) Strand = Plus / Minus Query: 784 tgaagaagcaggcaaccaaagtccaggggtccttacctacgatgctgaacaagatgctgt 843 ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| Sbjct: 62579 tgaagaagcaggcaatcaaagtcctgggatgcttacctacgatgctgatcaagatgctgt 62520 Query: 844 tgtttcatctggaaatagtacccccgtatccagtcctaggtttttcaacagg 895 |||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 62519 tgtttcatctggaaatagtacccctgtatctagccctaggtttttcaacagg 62468 Score = 135 bits (68), Expect = 6e-28 Identities = 140/164 (85%) Strand = Plus / Minus Query: 512 cctgttgttggtaatgatgctgaacttgaagagcgtatactgcaacacctagctgcttct 571 ||||||||||||||||||||||||||||||||||||||| | || |||||||| || | Sbjct: 62851 cctgttgttggtaatgatgctgaacttgaagagcgtatattacagcacctagcagcagcc 62792 Query: 572 gcagcaatgggaaggtcacaccaacatggtagaagagaggggcagaggaaccgatctggc 631 || |||||||||||||||||||| | |||||||||||| || || ||| || || ||| Sbjct: 62791 gctgcaatgggaaggtcacaccaccttggtagaagagaaggacacaggggtcgttccggc 62732 Query: 632 tctcatggccgcccacagttctttgttttctctgcacatccaaa 675 |||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct: 62731 tctcatggtcgtccacagttcttagttttttcttcgcatccaaa 62688 Score = 103 bits (52), Expect = 2e-18 Identities = 97/112 (86%) Strand = Plus / Minus Query: 397 cagtcaagagcttcttgaggcagtagagcgggagaggaatataagaaccaatcaaacccg 456 |||||||||||| || |||||||| ||||| || |||||| |||| ||||||||||| || Sbjct: 63068 cagtcaagagctgctcgaggcagtggagcgtgaaaggaatgtaaggaccaatcaaactcg 63009 Query: 457 gaatacgactatattccatcatcctgctcttggcgatttcgaagtgcagcat 508 ||||| |||||||| ||||||||||||||||| ||||| || || |||||| Sbjct: 63008 aaatacaactatatttcatcatcctgctcttggagattttgaggttcagcat 62957 Score = 97.6 bits (49), Expect = 1e-16 Identities = 64/69 (92%) Strand = Plus / Minus Query: 336 ggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||| Sbjct: 63230 ggtgtcagagaagttctcagtgtcctatgtgttggcagcctatcagtttgaaggatccta 63171 Query: 396 ccagtcaag 404 |||| |||| Sbjct: 63170 ccaggcaag 63162 Score = 79.8 bits (40), Expect = 3e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 892 caggagacattcatctggacaatctactccagtaggtaatgacagggcagggccatcaga 951 |||||| ||||| |||| ||||| ||||||||| || ||||| || ||||| ||||| Sbjct: 62388 caggaggcattccactgggcaatcaactccagtaaacaacgacagagctgggccttcaga 62329 Query: 952 tgttcagtctttctcagattctctgaagtcacgtttaaacgctgtctc 999 | |||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 62328 tcttcagtctttctcagactctctgaagtctcgcttaaatgctgtctc 62281 Score = 73.8 bits (37), Expect = 2e-09 Identities = 46/49 (93%) Strand = Plus / Minus Query: 290 ttgacaggttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 64429 ttgactggttgcaaacacgagttccacctccaatgcattcttgaatggt 64381 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 61354 aatttgatgtattggtttgat 61334
>ref|NM_001058041.1| Oryza sativa (japonica cultivar-group) Os03g0788800 (Os03g0788800) mRNA, complete cds Length = 1777 Score = 117 bits (59), Expect = 1e-22 Identities = 119/139 (85%) Strand = Plus / Plus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaagaagttctcagt 356 ||||||| ||||||| |||||| || ||||||||||||||||| || ||||| ||||||| Sbjct: 429 gttgcaagcatgagtaccatctgcagtgcattcttgaatggtgccagagaagctctcagt 488 Query: 357 gccctatgtgctggcagcctatcagtatgaaggatcctaccagtcaagagcttcttgagg 416 | || ||||| |||||||||||||| ||||||||||||| || ||||| || ||||||| Sbjct: 489 gtcccatgtgttggcagcctatcagcatgaaggatcctatgagccaagaactacttgagg 548 Query: 417 cagtagagcgggagaggaa 435 | || |||| |||||||| Sbjct: 549 ctgttgagcaagagaggaa 567 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Plus Query: 525 atgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatgggaa 584 |||||||||||||||| ||||| || | |||||| | |||||| |||| |||||| | | Sbjct: 648 atgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgta 707 Query: 585 ggtcacaccaacatggtagaagagaggggcagaggaaccgatctggctctcatggccgcc 644 |||||||| ||||||||||||||| || || | | ||||||||| |||||| |||||| Sbjct: 708 ggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcc 767 Query: 645 caca 648 |||| Sbjct: 768 caca 771
>dbj|AK071670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106F04, full insert sequence Length = 1778 Score = 117 bits (59), Expect = 1e-22 Identities = 119/139 (85%) Strand = Plus / Plus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaagaagttctcagt 356 ||||||| ||||||| |||||| || ||||||||||||||||| || ||||| ||||||| Sbjct: 430 gttgcaagcatgagtaccatctgcagtgcattcttgaatggtgccagagaagctctcagt 489 Query: 357 gccctatgtgctggcagcctatcagtatgaaggatcctaccagtcaagagcttcttgagg 416 | || ||||| |||||||||||||| ||||||||||||| || ||||| || ||||||| Sbjct: 490 gtcccatgtgttggcagcctatcagcatgaaggatcctatgagccaagaactacttgagg 549 Query: 417 cagtagagcgggagaggaa 435 | || |||| |||||||| Sbjct: 550 ctgttgagcaagagaggaa 568 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Plus Query: 525 atgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatgggaa 584 |||||||||||||||| ||||| || | |||||| | |||||| |||| |||||| | | Sbjct: 649 atgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgta 708 Query: 585 ggtcacaccaacatggtagaagagaggggcagaggaaccgatctggctctcatggccgcc 644 |||||||| ||||||||||||||| || || | | ||||||||| |||||| |||||| Sbjct: 709 ggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcc 768 Query: 645 caca 648 |||| Sbjct: 769 caca 772
>ref|NM_180720.1| Arabidopsis thaliana CIC7E11; protein binding / ubiquitin-protein ligase/ zinc ion binding (CIC7E11) mRNA, complete cds Length = 1729 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 193 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 252 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 253 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 312 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 313 agctcacagtgccctatgtgttggca 338
>ref|NM_122125.2| Arabidopsis thaliana CIC7E11; protein binding / ubiquitin-protein ligase/ zinc ion binding (CIC7E11) mRNA, complete cds Length = 1755 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 246 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 305 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 306 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 365 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 366 agctcacagtgccctatgtgttggca 391
>ref|NM_180719.2| Arabidopsis thaliana CIC7E11; protein binding / ubiquitin-protein ligase/ zinc ion binding (CIC7E11) mRNA, complete cds Length = 1855 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 319 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 378 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 379 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 438 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 439 agctcacagtgccctatgtgttggca 464
>gb|AF324994.1|AF324994 Arabidopsis thaliana CIC7E11 mRNA, complete cds Length = 1761 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 210 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 269 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 270 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 329 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 330 agctcacagtgccctatgtgttggca 355
>gb|BT002347.1| Arabidopsis thaliana clone C105154 unknown protein (At5g22000) mRNA, complete cds Length = 1159 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 79 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 138 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 139 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 198 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 199 agctcacagtgccctatgtgttggca 224
>gb|AF079182.1|AF079182 Arabidopsis thaliana RING-H2 finger protein RHF2a mRNA, complete cds Length = 1705 Score = 115 bits (58), Expect = 5e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 244 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 303 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 304 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 363 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 364 agctcacagtgccctatgtgttggca 389
>gb|DQ244707.1| Zea mays clone 10220 mRNA sequence Length = 1002 Score = 109 bits (55), Expect = 3e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 170 ttgcaatggcatctgaaactgatgagaaagctaagatggagagtttgacatctgctgcag 229 Query: 204 cctttgtagagggtggggtccaggatgcatg 234 ||||||| |||||||| | ||||||||||| Sbjct: 230 cctttgtggagggtggcattcaggatgcatg 260 Score = 61.9 bits (31), Expect = 7e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 239 gatgcatgtagcatttgcctggaggctttctgtgagagtgatccttctgca 289 |||||||| | ||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 253 gatgcatgcaacatttgccttgaggccttctgtgagagtgacccttctgca 303
>gb|AY074527.1| Arabidopsis thaliana At5g22000 mRNA sequence Length = 1709 Score = 107 bits (54), Expect = 1e-19 Identities = 123/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 196 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 255 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 256 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 315 Query: 347 agttctcagtgccctatgtgctggca 372 || || ||||||||||||| ||||| Sbjct: 316 agctcatagtgccctatgtgttggca 341
>dbj|AK118336.1| Arabidopsis thaliana At5g22000 mRNA for putative RING-H2 finger protein RHF2a, complete cds, clone: RAFL19-61-E24 Length = 1631 Score = 107 bits (54), Expect = 1e-19 Identities = 123/146 (84%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 193 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaagcgatccttct 252 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||| | Sbjct: 253 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaaa 312 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 313 agctcacagtgccctatgtgttggca 338
>emb|BX830974.1|CNS09YQ5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZG03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1704 Score = 107 bits (54), Expect = 1e-19 Identities = 124/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttct 286 ||||| ||||||||||| ||||||||||| || || | ||||| || || ||||||||| Sbjct: 324 gatgcttgtgatgatgcttgtagcatttgtcttgaatccttctgcgaaag-gatccttct 382 Query: 287 gcattgacaggttgcaaacatgagttccatctccaatgcattcttgaatggtgtcaaaga 346 | ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 383 actttgactagttgcaagcatgagtatcatcttcaatgcattcttgagtggtgtcaaaga 442 Query: 347 agttctcagtgccctatgtgctggca 372 || || |||||||||||||| ||||| Sbjct: 443 agctcacagtgccctatgtgttggca 468
>gb|AY111452.1| Zea mays CL8820_3 mRNA sequence Length = 1389 Score = 101 bits (51), Expect = 8e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 144 ttgcaatggcatccggaactgatgagaaagccaagatggagagtttgacatcgcctgcag 203 ||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 1308 ttgcaatggcatctgaaactgatgagaaagctaagatggagagtttgacatctgctgcag 1249 Query: 204 cctttgtagagggtg 218 ||||||| ||||||| Sbjct: 1248 cctttgtggagggtg 1234 Score = 56.0 bits (28), Expect = 4e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 250 catttgcctggaggctttctgtgagagtgatccttctgca 289 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct: 1214 catttgccttgaggccttctgtgagagtgacccttctgca 1175
>gb|BT013234.1| Lycopersicon esculentum clone 134486F, mRNA sequence Length = 1694 Score = 89.7 bits (45), Expect = 3e-14 Identities = 150/185 (81%) Strand = Plus / Plus Query: 189 tgacatcgcctgcagcctttgtagagggtggggtccaggatgcatgtgatgatgcatgta 248 ||||||| |||||||| ||||| || || || | |||||||||||||||||||| || | Sbjct: 130 tgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgca 189 Query: 249 gcatttgcctggaggctttctgtgagagtgatccttctgcattgacaggttgcaaacatg 308 ||||||| || ||||||||||| || || |||||| | | | || | ||||| |||| Sbjct: 190 gcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatg 249 Query: 309 agttccatctccaatgcattcttgaatggtgtcaaagaagttctcagtgccctatgtgct 368 |||| |||||||| ||| | || ||||||||||| ||||||||| | || |||||||| | Sbjct: 250 agtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgtt 309 Query: 369 ggcag 373 ||||| Sbjct: 310 ggcag 314
>gb|DQ427551.1| Sorghum propinquum locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427550.1| Sorghum bicolor voucher PI585454 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427549.1| Sorghum bicolor voucher PI267539 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427548.1| Sorghum bicolor voucher PI267408 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427547.1| Sorghum bicolor voucher PI221607 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427546.1| Sorghum bicolor voucher PI152702 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427545.1| Sorghum bicolor voucher NSL92371 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427544.1| Sorghum bicolor voucher NSL87902 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427543.1| Sorghum bicolor voucher NSL87666 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427542.1| Sorghum bicolor voucher NSL77217 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427541.1| Sorghum bicolor voucher NSL77034 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427540.1| Sorghum bicolor voucher NSL56174 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427539.1| Sorghum bicolor voucher NSL56003 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427538.1| Sorghum bicolor voucher NSL55243 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427537.1| Sorghum bicolor voucher NSL51365 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427536.1| Sorghum bicolor voucher NSL51030 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427535.1| Sorghum bicolor voucher NSL50875 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|DQ427534.1| Sorghum bicolor voucher BTx623 locus CSU704 genomic sequence Length = 401 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 1006 gtacaaagaatctattacaaaaagtacccgagggtggaaggagaggcttttttcacgtag 1065 ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | Sbjct: 316 gtacaaagaatctattacaaagagtactcgagggtggaaggagagactcttttcacgcaa 375 Query: 1066 ctcatctgtgtctgatcttggttctg 1091 || || ||| | ||||||||||||| Sbjct: 376 ttcgtccgtggcggatcttggttctg 401 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 932 gacagggcagggccatcagatgttcagtctttctcagattctctgaagtcacgtttaaac 991 |||||||| || ||||| ||| |||||||||||||||| || |||||||| || ||||| Sbjct: 148 gacagggctggaccatcggatattcagtctttctcagactccctgaagtctcgcttaaat 207 Query: 992 gctgtctc 999 |||||||| Sbjct: 208 gctgtctc 215
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 525 atgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatgggaa 584 |||||||||||||||| ||||| || | |||||| | |||||| |||| |||||| | | Sbjct: 133134 atgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgta 133075 Query: 585 ggtcacaccaacatggtagaagagaggggcagaggaaccgatctggctctcatggccgcc 644 |||||||| ||||||||||||||| || || | | ||||||||| |||||| |||||| Sbjct: 133074 ggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcc 133015 Query: 645 caca 648 |||| Sbjct: 133014 caca 133011 Score = 63.9 bits (32), Expect = 2e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 344 agaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||| |||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct: 133490 agaagctctcagtgtcccatgtgttggcagcctatcagcatgaaggatccta 133439 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Minus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||||| ||||||| |||||| || |||||||||||||||| Sbjct: 134734 gttgcaagcatgagtaccatctgcagtgcattcttgaatggt 134693
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 525 atgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatgggaa 584 |||||||||||||||| ||||| || | |||||| | |||||| |||| |||||| | | Sbjct: 32571516 atgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgta 32571457 Query: 585 ggtcacaccaacatggtagaagagaggggcagaggaaccgatctggctctcatggccgcc 644 |||||||| ||||||||||||||| || || | | ||||||||| |||||| |||||| Sbjct: 32571456 ggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcc 32571397 Query: 645 caca 648 |||| Sbjct: 32571396 caca 32571393 Score = 63.9 bits (32), Expect = 2e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 344 agaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||| |||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct: 32571872 agaagctctcagtgtcccatgtgttggcagcctatcagcatgaaggatccta 32571821 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Minus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||||| ||||||| |||||| || |||||||||||||||| Sbjct: 32573116 gttgcaagcatgagtaccatctgcagtgcattcttgaatggt 32573075
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 79.8 bits (40), Expect = 3e-11 Identities = 103/124 (83%) Strand = Plus / Minus Query: 525 atgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatgggaa 584 |||||||||||||||| ||||| || | |||||| | |||||| |||| |||||| | | Sbjct: 14455 atgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgta 14396 Query: 585 ggtcacaccaacatggtagaagagaggggcagaggaaccgatctggctctcatggccgcc 644 |||||||| ||||||||||||||| || || | | ||||||||| |||||| |||||| Sbjct: 14395 ggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcc 14336 Query: 645 caca 648 |||| Sbjct: 14335 caca 14332 Score = 63.9 bits (32), Expect = 2e-06 Identities = 47/52 (90%) Strand = Plus / Minus Query: 344 agaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||| |||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct: 14811 agaagctctcagtgtcccatgtgttggcagcctatcagcatgaaggatccta 14760 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Minus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||||| ||||||| |||||| || |||||||||||||||| Sbjct: 16055 gttgcaagcatgagtaccatctgcagtgcattcttgaatggt 16014
>dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198a, complete sequence Length = 75051 Score = 77.8 bits (39), Expect = 1e-10 Identities = 54/59 (91%) Strand = Plus / Minus Query: 524 aatgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatggg 582 ||||||||||| ||||||||||| ||| | ||||||||||||||| ||||||||||||| Sbjct: 20059 aatgatgctgatcttgaagagcgaataatccaacacctagctgctgctgcagcaatggg 20001 Score = 65.9 bits (33), Expect = 5e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 206 tttgtagagggtggggtccaggatgcatgtgatgatgcatgtagcatttgcctggaggct 265 ||||| |||||||| | |||||||| ||||||||||| || ||||| ||||| |||| | Sbjct: 22684 tttgtggagggtggaattcaggatgcttgtgatgatgcttgcagcatatgccttgaggat 22625 Query: 266 ttctgtgagagtgatccttct 286 |||||||| ||||| |||||| Sbjct: 22624 ttctgtgacagtgagccttct 22604 Score = 58.0 bits (29), Expect = 1e-04 Identities = 53/61 (86%) Strand = Plus / Minus Query: 336 ggtgtcaaagaagttctcagtgccctatgtgctggcagcctatcagtatgaaggatccta 395 ||||||| ||||| || |||||||| ||||| ||||||||||||||| | || ||||||| Sbjct: 20419 ggtgtcagagaagctcccagtgccccatgtgttggcagcctatcagtctcaaagatccta 20360 Query: 396 c 396 | Sbjct: 20359 c 20359
>gb|AC150799.4| Medicago truncatula chromosome 2 BAC clone mth2-47j13, complete sequence Length = 119159 Score = 61.9 bits (31), Expect = 7e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 524 aatgatgctgaacttgaagagcgtatactgcaacacctagctgcttctgcagcaatggg 582 ||||||||||| |||||||||||||| || |||||| | |||||| | ||||||||||| Sbjct: 104201 aatgatgctgatcttgaagagcgtattctccaacactttgctgctgcagcagcaatggg 104259 Score = 42.1 bits (21), Expect = 6.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1074 tgtctgatcttggttctgaagtgagacgagaagttaa 1110 ||||||||||||| |||||||| | ||||||||||| Sbjct: 104928 tgtctgatcttggatctgaagttaagcgagaagttaa 104964
>emb|AL589883.1|ATT6G21 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project) Length = 149788 Score = 50.1 bits (25), Expect = 0.027 Identities = 34/37 (91%) Strand = Plus / Plus Query: 336 ggtgtcaaagaagttctcagtgccctatgtgctggca 372 ||||||||||||| || |||||||||||||| ||||| Sbjct: 45967 ggtgtcaaagaagctcacagtgccctatgtgttggca 46003 Score = 44.1 bits (22), Expect = 1.7 Identities = 37/42 (88%) Strand = Plus / Plus Query: 297 gttgcaaacatgagttccatctccaatgcattcttgaatggt 338 ||||||| ||||||| ||||| |||||||||||||| |||| Sbjct: 45612 gttgcaagcatgagtatcatcttcaatgcattcttgagtggt 45653 Score = 42.1 bits (21), Expect = 6.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 227 gatgcatgtgatgatgcatgtagcatttg 255 ||||| ||||||||||| ||||||||||| Sbjct: 45459 gatgcttgtgatgatgcttgtagcatttg 45487
>gb|AC169833.4| Rhesus Macaque BAC CH250-207J10 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 187311 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 596 catggtagaagagaggggcaga 617 |||||||||||||||||||||| Sbjct: 109970 catggtagaagagaggggcaga 109991
>emb|AL445675.9| Human DNA sequence from clone RP11-498M14 on chromosome 1 Contains a CpG island, complete sequence Length = 171985 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1290 ccccttgtgtgaccatgtctgg 1311 |||||||||||||||||||||| Sbjct: 92544 ccccttgtgtgaccatgtctgg 92565
>emb|CR848040.6| Zebrafish DNA sequence from clone DKEY-19P15 in linkage group 13, complete sequence Length = 146215 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 644 ccacagttctttgttttctctg 665 |||||||||||||||||||||| Sbjct: 113509 ccacagttctttgttttctctg 113488
>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178484 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 883 gtttttcaacaggagacattca 904 |||||||||||||||||||||| Sbjct: 169979 gtttttcaacaggagacattca 170000
>emb|AL138996.4|CNS01DX1 Human chromosome 14 DNA sequence BAC R-902B17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184260 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 883 gtttttcaacaggagacattca 904 |||||||||||||||||||||| Sbjct: 183288 gtttttcaacaggagacattca 183267
>emb|AL844564.14| Mouse DNA sequence from clone RP23-400D4 on chromosome 11, complete sequence Length = 196136 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 998 tcctcaaagtacaaagaatcta 1019 |||||||||||||||||||||| Sbjct: 108661 tcctcaaagtacaaagaatcta 108682
>emb|CU207366.1| Gramella forsetii KT0803 complete genome Length = 3798465 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1005 agtacaaagaatctattacaaaaag 1029 ||||||||||| ||||||||||||| Sbjct: 2944992 agtacaaagaaactattacaaaaag 2944968
>emb|CT828213.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030K09, full insert sequence Length = 468 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 262 aatttgatgtattggtttgat 282
>emb|CT833639.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025B12, full insert sequence Length = 302 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1463 aatttgatgtattggtttgat 1483 ||||||||||||||||||||| Sbjct: 166 aatttgatgtattggtttgat 186
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1191 catctgcttctgaagtttgtc 1211 ||||||||||||||||||||| Sbjct: 8128581 catctgcttctgaagtttgtc 8128601
>gb|DQ256067.1| Thalassiosira pseudonana strain CCMP1335 silicon transporter (SIT2) mRNA, complete cds Length = 1587 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 ctttgtagagggtggggtcca 225 ||||||||||||||||||||| Sbjct: 310 ctttgtagagggtggggtcca 290
>gb|AC189210.1| Brassica rapa subsp. pekinensis clone KBrB007O13, complete sequence Length = 143309 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1666 cggctattatttatattaaaa 1686 ||||||||||||||||||||| Sbjct: 59298 cggctattatttatattaaaa 59278
>emb|CT943669.2| Pan troglodytes chromosome X clone CH251-484K12 map Xq28, complete sequence Length = 195387 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 tccttctgcattgacaggttgcaaa 304 |||| |||||||||||||||||||| Sbjct: 123512 tcctgctgcattgacaggttgcaaa 123488
>emb|CT737236.2| Pan troglodytes chromosome X clone CH251-15O05 map Xq28, complete sequence Length = 185887 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 tccttctgcattgacaggttgcaaa 304 |||| |||||||||||||||||||| Sbjct: 58962 tcctgctgcattgacaggttgcaaa 58938
>gb|AY842547.1| Sus scrofa isolate KNP69 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842546.1| Sus scrofa isolate KNP49 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842545.1| Sus scrofa isolate KNP48 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842544.1| Sus scrofa coreanus isolate KS37 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842543.1| Sus scrofa coreanus isolate KS34 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842542.1| Sus scrofa coreanus isolate KWB6 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842541.1| Sus scrofa coreanus isolate KWB3 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842540.1| Sus scrofa isolate JNP15 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842539.1| Sus scrofa isolate JNP10 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842538.1| Sus scrofa isolate JNP6 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842537.1| Sus scrofa isolate JNP3 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842536.1| Sus scrofa isolate JNP1 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842535.1| Sus scrofa isolate CP2S sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842534.1| Sus scrofa isolate CN1S sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842533.1| Sus scrofa isolate CW5S sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842532.1| Sus scrofa isolate CJ1S sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842531.1| Sus scrofa isolate Y0330 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842530.1| Sus scrofa isolate L0333 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842529.1| Sus scrofa isolate H69-3 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842528.1| Sus scrofa isolate D03154 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AY842527.1| Sus scrofa isolate B0453 sex determining region Y (SRY) gene, complete cds Length = 721 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 155 gaaactagaggaagtggtaga 175
>gb|AC099884.12| Mus musculus chromosome 15, clone RP23-11F24, complete sequence Length = 265797 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1645 taagggtttgatgctgttgca 1665 ||||||||||||||||||||| Sbjct: 37609 taagggtttgatgctgttgca 37629
>gb|AC158301.4| Mus musculus chromosome 5, clone RP24-71D19, complete sequence Length = 234479 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 gagtttgacatcgcctgcagccttt 208 |||||||||||| |||||||||||| Sbjct: 24050 gagtttgacatcccctgcagccttt 24074
>gb|AC126550.3| Mus musculus BAC clone RP24-405L5 from chromosome 17, complete sequence Length = 171820 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1349 tgcatgtgctcattcttcatc 1369 ||||||||||||||||||||| Sbjct: 91711 tgcatgtgctcattcttcatc 91691
>emb|CT025402.2| Xenopus tropicalis finished cDNA, clone TGas023b12 Length = 3483 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1101 gagaagttaacaatggaattg 1121 ||||||||||||||||||||| Sbjct: 590 gagaagttaacaatggaattg 610
>gb|AC025456.7| Homo sapiens chromosome 5 clone CTD-2197O4, complete sequence Length = 139086 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1191 catctgcttctgaagtttgtc 1211 ||||||||||||||||||||| Sbjct: 62034 catctgcttctgaagtttgtc 62014
>emb|AL109654.22|HSG278N14 Human DNA sequence from clone GS1-278N14 on chromosome Xq27.3-28, complete sequence Length = 182150 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 tccttctgcattgacaggttgcaaa 304 |||| |||||||||||||||||||| Sbjct: 35731 tcctgctgcattgacaggttgcaaa 35707
>gb|U49860.1|SSU49860 Sus scrofa SRY protein (SRY) gene, complete cds Length = 1771 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 760 gaaactagaggaagtggtaga 780
>emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 in linkage group 19, complete sequence Length = 121375 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1253 tctactactactattacgagtacta 1277 ||||||||||||||||||| ||||| Sbjct: 53407 tctactactactattacgactacta 53431 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1253 tctactactactattacgagtacta 1277 ||||||||||||||||||| ||||| Sbjct: 53450 tctactactactattacgactacta 53474 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1253 tctactactactattacgagtacta 1277 ||||||||||||||||||| ||||| Sbjct: 53711 tctactactactattacgactacta 53735
>gb|AC117725.23| Mus musculus chromosome 5, clone RP24-439K18, complete sequence Length = 180960 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 gagtttgacatcgcctgcagccttt 208 |||||||||||| |||||||||||| Sbjct: 101942 gagtttgacatcccctgcagccttt 101966
>dbj|AP007293.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34C12, TM0361, complete sequence Length = 108947 Score = 42.1 bits (21), Expect = 6.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 233 tgtgatgatgcatgtagcatttgcctggaggctttctgtgagagtgatccttc 285 ||||||||||| || ||||| ||||| |||| || ||||| ||||||||||| Sbjct: 108027 tgtgatgatgcttgcagcatatgccttgaggagttttgtgaaagtgatccttc 108079
>gb|AC026437.5|AC026437 Homo sapiens chromosome 5 clone CTD-2251O21, complete sequence Length = 91770 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1191 catctgcttctgaagtttgtc 1211 ||||||||||||||||||||| Sbjct: 91738 catctgcttctgaagtttgtc 91718
>ref|NM_214452.1| Sus scrofa sex determining region Y (SRY), mRNA Length = 627 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1151 gaaactagaggaagtggtaga 1171 ||||||||||||||||||||| Sbjct: 145 gaaactagaggaagtggtaga 165
>emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chromosome 2, complete sequence Length = 170342 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 682 ttctggctctgtttcatcatcttcc 706 |||||||||| |||||||||||||| Sbjct: 32592 ttctggctctctttcatcatcttcc 32616
>emb|AL935202.7| Zebrafish DNA sequence from clone CH211-197E11, complete sequence Length = 189096 Score = 42.1 bits (21), Expect = 6.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1253 tctactactactattacgagtacta 1277 ||||||||||||||||||| ||||| Sbjct: 122051 tctactactactattacgattacta 122075
>emb|AL935279.5| Zebrafish DNA sequence from clone CH211-195M9 in linkage group 24, complete sequence Length = 193366 Score = 42.1 bits (21), Expect = 6.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1535 tttcatctctgtaattaaaaa 1555 ||||||||||||||||||||| Sbjct: 15653 tttcatctctgtaattaaaaa 15673 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 315,545,619 Number of extensions: 16966302 Number of successful extensions: 344166 Number of sequences better than 10.0: 96 Number of HSP's gapped: 344144 Number of HSP's successfully gapped: 157 Length of query: 1721 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1698 Effective length of database: 18,503,978,556 Effective search space: 31419755588088 Effective search space used: 31419755588088 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
