ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf77p17 |
|---|---|
| Clone Library Name | barley_pub |
>Q8GXF0:RA51C_ARATH DNA repair protein RAD51 homolog 3 - Arabidopsis thaliana| (Mouse-ear cress) Length = 363 Score = 378 bits (970), Expect = e-104 Identities = 186/305 (60%), Positives = 236/305 (77%) Frame = +2 Query: 38 NHTDEEAYAALRGCDMAPNKTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGG 217 N T+EEA+ L+ + + ++ L+ GA+NAWDML EE+S ITT L++ILGGG Sbjct: 61 NITEEEAFEILKLANQSCCNGSRSLI-NGAKNAWDMLHEEESLPRITTSCSDLDNILGGG 119 Query: 218 IHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAE 397 I C++VTEIGGVPG+GKTQ+GIQL++NVQIP + GGLGGKA+YIDTEGSFMVER QIAE Sbjct: 120 ISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAE 179 Query: 398 GCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKD 577 C+ D+ EY H + Q ++PE L I+YFR+CSYTEQIA++N+LEKF+ E+KD Sbjct: 180 ACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKD 239 Query: 578 VRIVIIDSVTFHFRQDFEDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF 757 V++VI+DS+TFHFRQD++DLA RTRV ++LAVVLLNQVTTKF+EGSF Sbjct: 240 VKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSF 299 Query: 758 QLTLALGDSWSHSCTNRLILYWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDAGSSSCK 937 QL LALGDSWSHSCTNR+ILYW G+ER AY+DKSPSLP AS Y VTS+G+R++ SSS K Sbjct: 300 QLALALGDSWSHSCTNRVILYWNGDERYAYIDKSPSLPSASASYTVTSRGLRNSSSSS-K 358 Query: 938 RVRVM 952 RV++M Sbjct: 359 RVKMM 363
>O43502:RA51C_HUMAN DNA repair protein RAD51 homolog 3 - Homo sapiens (Human)| Length = 376 Score = 211 bits (538), Expect = 3e-54 Identities = 114/262 (43%), Positives = 157/262 (59%), Gaps = 1/262 (0%) Frame = +2 Query: 134 AWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPV 313 A ++L +E +Q I T +L+DILGGG+ + TEI G PGVGKTQL +QLA++VQIP Sbjct: 87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPE 146 Query: 314 DYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHH-DKASSGQENLQPESFLA 490 +GG+ G+AV+IDTEGSFMV+RV +A CI + H ++ E+ ++ L+ Sbjct: 147 CFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILS 206 Query: 491 GIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFEDLALRTRVXXXXX 670 IYYFR YTE +A + L FL EH VR+VI+D + F FR D +DL+LRTR+ Sbjct: 207 HIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLA 266 Query: 671 XXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYWKGNERCAYL 850 + LAV+L NQ+TTK L ALG+SW H+ T RLI +W +R A L Sbjct: 267 QQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRLATL 326 Query: 851 DKSPSLPVASTPYAVTSKGVRD 916 KSPS + + + +G RD Sbjct: 327 YKSPSQKECTVLFQIKPQGFRD 348
>Q975Y1:RADA_SULTO DNA repair and recombination protein radA - Sulfolobus tokodaii| Length = 324 Score = 157 bits (397), Expect = 7e-38 Identities = 101/289 (34%), Positives = 157/289 (54%), Gaps = 12/289 (4%) Frame = +2 Query: 89 PNKTAQKLLLQGAQ-------NAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIG 247 P TAQ+++ + + A ++ E + K ITTGS +L+ +LGGGI + +TE+ Sbjct: 54 PLTTAQRIIKEAREALDIRFKTALEVKKERINTKKITTGSQALDGLLGGGIETRTMTELF 113 Query: 248 GVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYF 427 G G GKTQL QL++NVQ+P++ GGLGGKAVYIDTEG+F ER+ Sbjct: 114 GEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERI--------------- 158 Query: 428 PCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 +A S L+P+S + IYY R + Q+A+++ L++ + + +++VI+DSVT Sbjct: 159 -----EAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKLVIVDSVT 213 Query: 608 FHFRQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALG 778 HFR +F E+LA+R + Y+LAV++ NQV + T+A+G Sbjct: 214 SHFRAEFPGRENLAVRQQKLNKHLHQLVRLAEMYDLAVIITNQVMARPDMFYGDPTVAVG 273 Query: 779 DSWSHSCTNRLILYWK--GNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 + + K GN+R A + +P LP +A+T +GVRDA Sbjct: 274 GHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGVRDA 322
>Q9YFY1:RADA_AERPE DNA repair and recombination protein radA - Aeropyrum pernix| Length = 319 Score = 155 bits (391), Expect = 4e-37 Identities = 109/320 (34%), Positives = 169/320 (52%), Gaps = 17/320 (5%) Frame = +2 Query: 8 PQTRGSPLSMNHTDEEAYAALRGCDMA-----PNKTAQKLLLQGAQ-------NAWDMLS 151 P T + +T EA AA +++ P TAQK++ + A+D+ Sbjct: 19 PTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNIDFKTAYDLKI 78 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E + K ITTGS +L+++LGGGI K +TE+ G G GKTQ+ QL++NVQ+P D GGL Sbjct: 79 ESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLE 138 Query: 332 GKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRI 511 GKAVY+DTEG+F ER+ Q+A G L P+ + IY+ R Sbjct: 139 GKAVYVDTEGTFRWERIEQMARGV--------------------GLDPDEVMKNIYWIRA 178 Query: 512 CSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVXXXXXXXXX 682 + QIA+++ L + ++ ++++V++DSVT HFR +F E+LA+R ++ Sbjct: 179 INSHHQIAIVDKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLM 237 Query: 683 XXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLIL-YWKGNERCAYLDK 856 +N+AVV+ NQV + T A+G H+ R+ L +GN+R A + Sbjct: 238 RLADIFNVAVVITNQVMARPDVFYGDPTQAVGGHVLGHAPGVRVYLKKSRGNKRIARVVD 297 Query: 857 SPSLPVASTPYAVTSKGVRD 916 +P LP T +A+T G+RD Sbjct: 298 APHLPEGETVFAITEWGIRD 317
>Q4JAT5:RADA_SULAC DNA repair and recombination protein radA - Sulfolobus| acidocaldarius Length = 321 Score = 146 bits (368), Expect = 2e-34 Identities = 93/289 (32%), Positives = 152/289 (52%), Gaps = 12/289 (4%) Frame = +2 Query: 89 PNKTAQKLLLQGAQ-------NAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIG 247 P TAQ+++ + + A ++ E + K ITTGS +L+ +LGGGI + +TE Sbjct: 51 PQTTAQRIIKEAREALDIRFKTALEVKKERMNTKKITTGSQALDGLLGGGIETRTMTEFF 110 Query: 248 GVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYF 427 G G GKTQL Q++I+VQ+P + GGL GKAVYIDTEG+F ER+ +A+G Sbjct: 111 GEFGSGKTQLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGA-------- 162 Query: 428 PCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 L+ + + IYY R + Q+A+++ L++ + + ++++I+DS+T Sbjct: 163 ------------GLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKLIIVDSIT 210 Query: 608 FHFRQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALG 778 HFR ++ E+LA+R + Y++AV++ NQV + T A+G Sbjct: 211 SHFRAEYPGRENLAVRQQKLNKHLHQLVRLAEMYDIAVIITNQVMARPDMFYGDPTTAVG 270 Query: 779 DSWSHSCTNRLILYWK--GNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 + + K GN+R A + +P LP +A+T +GVRDA Sbjct: 271 GHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGVRDA 319
>Q55075:RADA_SULSO DNA repair and recombination protein radA - Sulfolobus solfataricus| Length = 324 Score = 145 bits (365), Expect = 4e-34 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 12/289 (4%) Frame = +2 Query: 89 PNKTAQKLLLQGA-------QNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIG 247 P TAQK++ + + A ++ E + K I+TGS +L+ +L GGI + +TE Sbjct: 54 PLSTAQKIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFF 113 Query: 248 GVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYF 427 G G GKTQL QL++NVQ+P + GGL GKAVYIDTEG+F ER+ +A+ DI Sbjct: 114 GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI---- 169 Query: 428 PCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 ++ + IYY R + QIA+++ L++ + + ++++++DSVT Sbjct: 170 ----------------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 Query: 608 FHFRQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALG 778 HFR ++ E+LA+R + Y++AV++ NQV + T+A+G Sbjct: 214 SHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVG 273 Query: 779 DSWSHSCTNRLILYWK--GNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 + I K GN R A + +P LP +A+T +G+RDA Sbjct: 274 GHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGIRDA 322
>Q9Y8J4:RADA_DESAM DNA repair and recombination protein radA - Desulfurococcus| amylolyticus Length = 328 Score = 145 bits (365), Expect = 4e-34 Identities = 100/280 (35%), Positives = 150/280 (53%), Gaps = 5/280 (1%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A+K+L + A ++ E + ITTGS SL+++LGGG+ K +TE G G GKTQ Sbjct: 67 ENARKMLGITFKTAREVKQERSNIGKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQ 126 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 + QL++NVQ+ + GGL G+AVYIDTEG+F ER+ +A Sbjct: 127 ICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARAL----------------- 169 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF-- 628 L P+ + IYY R + QIA+++ L F+ ++ DVR+VI+DSVT HFR ++ Sbjct: 170 ---GLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVRLVILDSVTSHFRAEYPG 225 Query: 629 -EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCT 802 E LA R + AYN+AVV+ NQV + T A+G +H+ Sbjct: 226 REHLAERQQKLNSHLHQLMRLAEAYNVAVVVTNQVMARPDVFYGDPTTAVGGHVLAHTPG 285 Query: 803 NRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 R+ L KGN+R A + +P LP + +T +G+RD+ Sbjct: 286 VRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGIRDS 325
>Q74MX9:RADA_NANEQ DNA repair and recombination protein radA - Nanoarchaeum equitans| Length = 325 Score = 137 bits (345), Expect = 8e-32 Identities = 92/279 (32%), Positives = 142/279 (50%), Gaps = 8/279 (2%) Frame = +2 Query: 104 QKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGI 283 ++L L + A ++L E Q ITT S +L+ +LGGGI +TE G G GKTQ+G Sbjct: 66 ERLGLLEFKTAEEVLEERQKTARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGH 125 Query: 284 QLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQE 463 QLA++VQ+P + GGL GKAVYIDTEG+F ER+ Q+AE Sbjct: 126 QLAVDVQLPPEQGGLEGKAVYIDTEGTFRPERIKQMAEAL-------------------- 165 Query: 464 NLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE---D 634 +L P+ L +Y+ ++ + Q+ E+ + + + ++++++DS+T FR ++ Sbjct: 166 DLDPKKALKNVYHMKVFNTDHQMLAARKAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQ 225 Query: 635 LALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTK---FTEGSFQLTLALGDSWSHSCTN 805 LA R YN+A+ + NQV K F G + G +H+ T Sbjct: 226 LAERQHKLGRHVHDLLRIAELYNVAIYVTNQVMAKPDSFIPGLDSVQAVGGHVLAHASTY 285 Query: 806 RLILYWKGNE--RCAYLDKSPSLPVASTPYAVTSKGVRD 916 R+ L KG + R A L SP LP T + +T +G+RD Sbjct: 286 RVFLR-KGKKGIRIARLVDSPHLPERETTFVITEEGIRD 323
>Q9UWR5:RADA_PYRIL DNA repair and recombination protein radA - Pyrobaculum islandicum| (strain DSM 4184 / JCM 9189) Length = 330 Score = 130 bits (328), Expect = 7e-30 Identities = 96/281 (34%), Positives = 146/281 (51%), Gaps = 7/281 (2%) Frame = +2 Query: 95 KTAQKLL-LQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKT 271 + A+K+L L +A ++ + + I+TG +L+++LGGGI + VTE+ G G GKT Sbjct: 72 EAARKMLGLHSFVSALEVYERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKT 131 Query: 272 QLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKAS 451 QL QLA+ VQ+P + GGLG KA+YIDTE +F ER+ QIA+ Sbjct: 132 QLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA----------------- 174 Query: 452 SGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF- 628 L P+ L I+Y R S Q+ +++ + + +H +V ++I+DSV HFR +F Sbjct: 175 ---RGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQH-NVALLIVDSVIAHFRSEFP 230 Query: 629 --EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF--QLTLALGDSWSHS 796 E+LA R + AY++AVV+ NQV + + F L A G+ +H Sbjct: 231 GRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQ-PDVFFGNPLRPAGGNILAHG 289 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 T RL L K N R A + SP P + +T +G+ D Sbjct: 290 ATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGLVD 330
>Q8ZYR9:RADA_PYRAE DNA repair and recombination protein radA - Pyrobaculum aerophilum| Length = 333 Score = 127 bits (318), Expect = 1e-28 Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 7/281 (2%) Frame = +2 Query: 95 KTAQKLL-LQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKT 271 + A+K+L L +A ++ + + I+TG SL+++LGGGI + VTEI G G GKT Sbjct: 75 EAARKMLGLHSFISALEVYERRKKIRRISTGVRSLDELLGGGIETRAVTEIVGEFGSGKT 134 Query: 272 QLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKAS 451 QL QLA+ VQ+P + GGLG KA+YIDTE +F ER+ QIA+ Sbjct: 135 QLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKA----------------- 177 Query: 452 SGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF- 628 L + L I+Y R S Q+ ++ + + +H +V ++++DSV HFR +F Sbjct: 178 ---RGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQH-NVALLVVDSVIAHFRSEFP 233 Query: 629 --EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF--QLTLALGDSWSHS 796 E+LA R + AY++AVV+ NQV + + F L A G+ +H Sbjct: 234 GRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQ-PDVFFGNPLRPAGGNILAHG 292 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 T RL L K N R A + SP P + +T +G+ D Sbjct: 293 ATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGLVD 333
>O27436:RADA_METTH DNA repair and recombination protein radA - Methanobacterium| thermoautotrophicum Length = 311 Score = 125 bits (313), Expect = 4e-28 Identities = 88/269 (32%), Positives = 136/269 (50%), Gaps = 6/269 (2%) Frame = +2 Query: 128 QNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 + A+D++ + ITTGS +L++++GGGI + +TE+ G G GK+QL +LA+ VQ+ Sbjct: 64 ETAFDVMERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVTVQL 123 Query: 308 PVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL 487 P + GGL +AV+IDTE +F ER+ QIA D+ E L Sbjct: 124 PEERGGLDAEAVFIDTENTFRPERIEQIANAFELDL--------------------EEVL 163 Query: 488 AGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVX 658 I+ R + + QI + + + + E K++R+VI+DS+T HFR ++ E LA R + Sbjct: 164 NKIHIARAFNSSHQILMAEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKL 223 Query: 659 XXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLILYWKG-- 829 YN AV + NQV + T A+G H+ T R+ L KG Sbjct: 224 NQHLHTLQNIANTYNAAVFVTNQVQARPDAFFGSPTKAIGGHVLGHAATYRIWLK-KGLA 282 Query: 830 NERCAYLDKSPSLPVASTPYAVTSKGVRD 916 +R A L SP LP + +T+ G+ D Sbjct: 283 GKRIARLVDSPHLPEGECVFKITTAGIVD 311
>O29269:RADA_ARCFU DNA repair and recombination protein radA - Archaeoglobus fulgidus| Length = 337 Score = 121 bits (303), Expect = 6e-27 Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 10/292 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWD-MLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKT 271 + A+KL G + D +L +S K ITTGS L+++LGGG+ + +TE G G GKT Sbjct: 63 QAARKLANIGGFESGDKVLERRRSVKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKT 122 Query: 272 QLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKAS 451 Q+ QLA+NVQ+P D GGL G + IDTE +F ER+ Q+AE Sbjct: 123 QICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEA----------------- 165 Query: 452 SGQENLQPESFLAGIYYFRICSYTEQIAVIN----YLEKFLGEHKDVRIVIIDSVTFHFR 619 + L L IY + + Q+ +++ EK E + VR++I+DS+ HFR Sbjct: 166 ---KGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFR 222 Query: 620 QDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-W 787 ++ LA R + YN A+V+ NQV + T +G Sbjct: 223 AEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTNQVMARPDVLFGDPTKPVGGHIV 282 Query: 788 SHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDAGSSSCKR 940 +H+ T R+ L K + R A L SP LP + VT +G+ DA K+ Sbjct: 283 AHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAIFRVTERGIEDAEEKDKKK 334
>Q9V233:RADA_PYRAB DNA repair and recombination protein radA - Pyrococcus abyssi| Length = 356 Score = 120 bits (300), Expect = 1e-26 Identities = 86/268 (32%), Positives = 129/268 (48%), Gaps = 9/268 (3%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 + L + +S I+TGS SL+ +LGGGI + +TE+ G G GKTQL LA+ VQ+P + Sbjct: 109 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 168 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GGL G ++IDTE +F ER+ +IA+ L P+ L IY Sbjct: 169 GGLNGSVIWIDTENTFRPERIREIAK--------------------NRGLDPDEVLKHIY 208 Query: 500 YFRICSYTEQIAVINYLE----KFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVX 658 R + Q+ ++ E + L K V+++I+DS+T HFR ++ LA R + Sbjct: 209 VARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 268 Query: 659 XXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLIL-YWKGN 832 Y +AV + NQV + T +G +HS T R+ L KG Sbjct: 269 AKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGG 328 Query: 833 ERCAYLDKSPSLPVASTPYAVTSKGVRD 916 +R A L +P LP + +T KG+ D Sbjct: 329 KRVARLIDAPHLPEGEAVFRITEKGIED 356
>O74036:RADA_PYRFU DNA repair and recombination protein radA - Pyrococcus furiosus| Length = 349 Score = 118 bits (295), Expect = 5e-26 Identities = 84/268 (31%), Positives = 130/268 (48%), Gaps = 9/268 (3%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 + L + + I+TGS SL+ +LGGGI + +TE+ G G GKTQL LA+ VQ+P + Sbjct: 102 EYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GGL G ++IDTE +F ER+ +IA+ L P+ L IY Sbjct: 162 GGLNGSVIWIDTENTFRPERIREIAQ--------------------NRGLDPDEVLKHIY 201 Query: 500 YFRICSYTEQIAVINYLE----KFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVX 658 R + Q+ ++ E + L + V+++I+DS+T HFR ++ LA R + Sbjct: 202 VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 261 Query: 659 XXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLIL-YWKGN 832 Y++AV + NQV + T +G +HS T R+ L KG Sbjct: 262 AKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGG 321 Query: 833 ERCAYLDKSPSLPVASTPYAVTSKGVRD 916 +R A L +P LP +++T KG+ D Sbjct: 322 KRIARLIDAPHLPEGEAVFSITEKGIED 349
>P25453:DMC1_YEAST Meiotic recombination protein DMC1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 334 Score = 118 bits (295), Expect = 5e-26 Identities = 88/285 (30%), Positives = 133/285 (46%), Gaps = 10/285 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A K++ G A L Q ++TGS L+ ILGGGI +TE+ G GKTQ Sbjct: 70 EAAGKIIQVGFIPATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQ 129 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 + L + Q+P + GG GK YIDTEG+F ER+ QIAEG Sbjct: 130 MSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEG------------------ 171 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF-- 628 L PES LA + Y R + Q+ ++ L + L D R++++DS+ +FR D+ Sbjct: 172 --YELDPESCLANVSYARALNSEHQMELVEQLGEELSS-GDYRLIVVDSIMANFRVDYCG 228 Query: 629 -EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQV------TTKFTEGSFQLTLALGDSW 787 +L+ R + +N+AV L NQV + F + + G Sbjct: 229 RGELSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIG-GHVL 287 Query: 788 SHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 +H+ R++L +G+ER A L SP +P Y + KG+ D+ Sbjct: 288 AHASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITDS 332
>Q8PZN5:RADA_METMA DNA repair and recombination protein radA - Methanosarcina mazei| (Methanosarcina frisia) Length = 325 Score = 115 bits (288), Expect = 3e-25 Identities = 87/257 (33%), Positives = 124/257 (48%), Gaps = 9/257 (3%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 +TTG ++++GGGI + +TE+ G G GKTQ+ QLA+NVQ+ ++GGLGG + ID Sbjct: 82 LTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVIIID 141 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQI 532 TE +F ER+ Q+ G G E L PE FL I+ R + QI Sbjct: 142 TENTFRPERITQMVNGL-------------SEKYGME-LNPEEFLQNIHVARAYNSNHQI 187 Query: 533 AVINYLEKFLGEHKD----VRIVIIDSVTFHFRQDF---EDLALRTRVXXXXXXXXXXXX 691 +++ E K+ VR++I+DS+ HFR ++ LA R + Sbjct: 188 LLVDSAVDLANELKEMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFG 247 Query: 692 XAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLIL-YWKGNERCAYLDKSPS 865 +N VV+ NQV K T +G H+ T RL L KG +R L SPS Sbjct: 248 DLFNACVVVTNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRKSKGEKRIIRLVDSPS 307 Query: 866 LPVASTPYAVTSKGVRD 916 LP AVT+ G+ D Sbjct: 308 LPEGEAVVAVTTAGLTD 324
>Q8TK71:RADA_METAC DNA repair and recombination protein radA - Methanosarcina| acetivorans Length = 325 Score = 114 bits (284), Expect = 9e-25 Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 9/284 (3%) Frame = +2 Query: 92 NKTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKT 271 N Q + G + +L + +TTG ++++GGGI + +TE+ G G GKT Sbjct: 55 NSARQAADIGGFETGDLVLERRKLVGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKT 114 Query: 272 QLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKAS 451 Q+ QLA+NVQ+ ++GGL G + IDTE +F ER+ Q+ +G Sbjct: 115 QVAHQLAVNVQMDKEHGGLDGSVIIIDTENTFRPERITQMVKGL-------------SEK 161 Query: 452 SGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKD----VRIVIIDSVTFHFR 619 G E L PE FL I+ R + QI +++ E K+ VR++I+DS+ HFR Sbjct: 162 YGME-LDPEEFLQNIHVARAYNSNHQILLVDSATDLANELKEMGKPVRLLIVDSLMAHFR 220 Query: 620 QDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-W 787 ++ LA R + +N VV+ NQV K T +G Sbjct: 221 AEYVGRGTLADRQQKLNKHMHGLLRFGDLFNACVVVTNQVMAKPDAFFGDPTRPVGGHIV 280 Query: 788 SHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T RL L KG +R L SPSLP AVT+ G+ D Sbjct: 281 GHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLTD 324
>O15315:RA51B_HUMAN DNA repair protein RAD51 homolog 2 - Homo sapiens (Human)| Length = 384 Score = 112 bits (281), Expect = 2e-24 Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 28/282 (9%) Frame = +2 Query: 149 SEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 S + S ++T +L++ L GG+ C +TEI G PG GKTQ I ++I +P + GGL Sbjct: 75 SADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGL 134 Query: 329 GGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFR 508 G VYIDTE +F ER+ +IAE S YF + +E L S + ++ +R Sbjct: 135 EGAVVYIDTESAFSAERLVEIAE---SRFPRYF--------NTEEKLLLTS--SKVHLYR 181 Query: 509 ICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE-----DLALRTRVXXXXXX 673 + E + I LE+ + K +++VI+DSV R++F+ +L R + Sbjct: 182 ELTCDEVLQRIESLEEEI-ISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 240 Query: 674 XXXXXXXAYNLAVVLLNQVTTKF----------------------TEGSFQLTLALGDSW 787 +++ V+L NQ+TT T GS + ALG++W Sbjct: 241 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 300 Query: 788 SHSCTNRLILYWKGNERCAYL-DKSPSLPVASTPYAVTSKGV 910 SHS RLIL + +ER L KSP P S Y + +G+ Sbjct: 301 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGL 342
>P37384:DMC1_LILLO Meiotic recombination protein DMC1 homolog - Lilium longiflorum| (Trumpet lily) Length = 349 Score = 112 bits (281), Expect = 2e-24 Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 7/282 (2%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A+KL+ G D+L + +S ITTGS +L+++LGGGI ++TE G GKTQ Sbjct: 87 EAAEKLVNVGYITGSDVLLKRKSVIRITTGSQALDELLGGGIETLQITEAFGEFRSGKTQ 146 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 + L ++ Q+PV G GK YIDTEG+F +R+ IAE Sbjct: 147 IAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAE------------------- 187 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + + + L I Y R +Y Q ++ L + E + R++I+DSV FR DF Sbjct: 188 -RFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSE-EPFRLLIVDSVIALFRVDFSG 245 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF---QLTLALGDSWSHS 796 +LA R + +N+AV + NQV G F A G +H+ Sbjct: 246 RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA 305 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL+L KG +R + +P+LP + + +T GV DA Sbjct: 306 ATVRLMLRKGKGEQRVCKIFDAPNLPESEAVFQITPGGVADA 347
>Q96449:DMC1_SOYBN Meiotic recombination protein DMC1 homolog - Glycine max (Soybean)| Length = 345 Score = 111 bits (278), Expect = 5e-24 Identities = 88/282 (31%), Positives = 134/282 (47%), Gaps = 7/282 (2%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A+KL+ G D L + +S ITTGS +L+++LGGG+ +TE G GKTQ Sbjct: 83 EAAEKLVNFGYITGSDALLKRKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQ 142 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L ++ Q+P + G GK YIDTEG+F +R+ IAE Sbjct: 143 LAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAE------------------- 183 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + + P + L I Y R +Y Q ++ L + E + R++I+DSV FR DF Sbjct: 184 -RFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFSG 241 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF---QLTLALGDSWSHS 796 +LA R + +N+AV + NQV + G F A G +H+ Sbjct: 242 RGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFVTDPKKPAGGHVLAHA 301 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL+ KG +R + +P+LP A + +T+ G+ DA Sbjct: 302 ATVRLMFRKGKGEQRICKVFDAPNLPEAEAVFQITAGGIADA 343
>Q39009:DMC1_ARATH Meiotic recombination protein DMC1 homolog - Arabidopsis thaliana| (Mouse-ear cress) Length = 344 Score = 108 bits (269), Expect = 5e-23 Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 7/282 (2%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A+K++ G D L + +S ITTG +L+D+LGGGI +TE G GKTQ Sbjct: 82 EAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQ 141 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P + G GK YIDTEG+F +R+ IAE Sbjct: 142 LAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAE------------------- 182 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + + P + L I Y R +Y Q ++ L + E + RI+I+DS+ FR DF Sbjct: 183 -RFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRILIVDSIIALFRVDFTG 240 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF---QLTLALGDSWSHS 796 +LA R + +N+AV + NQV G F A G +H+ Sbjct: 241 RGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHA 300 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL+ KG+ R + +P+L A + +T G+ DA Sbjct: 301 ATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADA 342
>Q49593:RADA_METJA DNA repair and recombination protein radA - Methanococcus| jannaschii Length = 352 Score = 107 bits (268), Expect = 7e-23 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 15/289 (5%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A++L G ++ ++LS+ ++ ++TGS +L++ILGGG+ + VTE G+ G GKTQ Sbjct: 85 EAARELCNLGFKSGTEVLSQRKNIWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQ 144 Query: 275 LGIQLAINVQIP---------VDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYF 427 + Q +N+Q P D KAVYIDTEG+F ER+ Q+AE Sbjct: 145 IAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEAL-------- 196 Query: 428 PCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 L L I+ R + Q+ +E + E ++++VI+DS+T Sbjct: 197 ------------GLDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIKLVIVDSLT 244 Query: 608 FHFRQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTK--FTEGSFQLTLA 772 FR ++ LA R + YN V++ NQV + G + + Sbjct: 245 STFRTEYIGRGKLAERQQKLGRHMATLNKLADIYNCVVIVTNQVAARPDALFGPSEQAIG 304 Query: 773 LGDSWSHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 G H+ T R+ L KG++R A L SP LP A + +T KG+ D Sbjct: 305 -GHIVGHAATFRIFLRKAKGDKRVAKLYDSPHLPDAEAMFRITEKGIHD 352
>Q9HMM4:RADA_HALSA DNA repair and recombination protein radA - Halobacterium| salinarium (Halobacterium halobium) Length = 343 Score = 106 bits (265), Expect = 1e-22 Identities = 78/277 (28%), Positives = 136/277 (49%), Gaps = 13/277 (4%) Frame = +2 Query: 122 GAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINV 301 G + +L + +T ++D+LGGG+ + +TE+ G G GK+Q+ QLA+NV Sbjct: 65 GFETGATVLERREQIGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNV 124 Query: 302 QIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIME-YFPCHHDKASSGQENLQPE 478 Q+P +YGGL G+AV+ID+E +F ER+ + G + ++ H + S+ E+ E Sbjct: 125 QLPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTE 184 Query: 479 ---SFLAGIYYFRICSYTEQIAVINYLEKFLGEHKD----VRIVIIDSVTFHFRQDF--- 628 +FL I+ + + Q+ + ++ EH+D VR++ +DS+T HFR ++ Sbjct: 185 LVDAFLDKIHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGR 244 Query: 629 EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTN 805 +LA R + YN AV++ NQV + T +G + H T Sbjct: 245 GELADRQQKLNKHLHDLEKVGNLYNAAVLVTNQVQSNPDAFFGDPTKPIGGNILGHKSTF 304 Query: 806 RLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVR 913 R+ L K ++R L +P+L V +G++ Sbjct: 305 RMYLRKSKNDKRIVKLVDAPNLADGEAVMRVQDEGLK 341
>O42634:DMC1_SCHPO Meiotic recombination protein dmc1 - Schizosaccharomyces pombe| (Fission yeast) Length = 332 Score = 106 bits (264), Expect = 2e-22 Identities = 84/282 (29%), Positives = 122/282 (43%), Gaps = 8/282 (2%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A K+ A ++ + I+TGS +LN ILGGGI +TE+ G GKTQ Sbjct: 69 EAASKMCPANFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQ 128 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 + L + Q+P D GG GK +IDTEG+F +R+ IAE D A Sbjct: 129 MSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVD-----------ADQ 177 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 EN I R + +Q+ I L E R++I+DS+ FR D+ Sbjct: 178 AMEN---------IIVSRAYNSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSG 228 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVT----TKFTEGSFQLTLALGDSWSH 793 +L+ R + +N+AV + NQV S G +H Sbjct: 229 RGELSERQQKLNIMLARLNHISEEFNVAVFVTNQVQADPGAAMMFASNDRKPVGGHVMAH 288 Query: 794 SCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 + RL+L +G ER A L+ SP +P A Y +T G+ D Sbjct: 289 ASATRLLLRKGRGEERVAKLNDSPDMPEAECSYVITPGGIAD 330
>Q97BJ9:RADA_THEVO DNA repair and recombination protein radA - Thermoplasma volcanium| Length = 323 Score = 105 bits (263), Expect = 3e-22 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 6/265 (2%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 ++L ++ + +TTGS +L+D+LGGG+ + +TE G G GKTQ+ QLA+N +P + Sbjct: 79 EILERRKTIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTMPKEK 138 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GG + IDTE +F ER+ Q+A+ + L P+ L I+ Sbjct: 139 GGFDSDVMMIDTENTFRPERIIQMAK--------------------SKGLDPDETLKRIH 178 Query: 500 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVXXXXX 670 R + QI + ++ E ++R++I+DS+T HFR ++ LA R ++ Sbjct: 179 VARAYNSHHQILLAEKAQETAKEF-NIRLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHM 237 Query: 671 XXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLAL--GDSWSHSCTNRLIL-YWKGNERC 841 YN + + NQV+ + + F +A G+ H+ T R+ L KG +R Sbjct: 238 HDLLRFGTIYNAVIAVTNQVSAR-PDVFFGDPMAPIGGNIVGHTATFRVYLRKSKGGKRI 296 Query: 842 AYLDKSPSLPVASTPYAVTSKGVRD 916 A L SP LP T ++ +GV D Sbjct: 297 ARLIDSPYLPEGETVIQISEEGVND 321
>Q6L126:RADA_PICTO DNA repair and recombination protein radA - Picrophilus torridus| Length = 323 Score = 105 bits (263), Expect = 3e-22 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 5/264 (1%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 ++L++ + K +TTGS +L+++LGGG+ + +TE G G GKTQ+ QLA+N +PV+ Sbjct: 78 EILNKRKEIKKLTTGSSNLDNLLGGGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEK 137 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 G + IDTE +F ER+ Q+A ++L P+ L I+ Sbjct: 138 NGFDSDVLIIDTENTFRPERIIQMARA--------------------KDLDPDQTLERIH 177 Query: 500 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVXXXXX 670 R + QI + E+K +R++I+DS+T HFR ++ LA R ++ Sbjct: 178 VARAYNSHHQILLAEKAADMAREYK-IRLLIVDSLTSHFRSEYVGRGSLAERQQLLNRHM 236 Query: 671 XXXXXXXXAYNLAVVLLNQVTTK-FTEGSFQLTLALGDSWSHSCTNRLIL-YWKGNERCA 844 YN + + NQV+ + G+ H+ T R+ L K +R A Sbjct: 237 HDLLKFGTIYNAVIAVTNQVSANPAVFFGDPMNPIGGNIVGHTATFRIYLRKAKAGKRIA 296 Query: 845 YLDKSPSLPVASTPYAVTSKGVRD 916 L SP LP T +T G+ D Sbjct: 297 RLIDSPYLPEGETVITITESGITD 320
>Q977P5:RADA_METMP DNA repair and recombination protein radA - Methanococcus| maripaludis Length = 322 Score = 105 bits (263), Expect = 3e-22 Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 15/287 (5%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A+ L G ++ ++L + QS ++TGS L+ +L GGI + VTE G+ G GKTQ+ Sbjct: 56 ARDLCDLGFKSGVELLKQRQSVWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIM 115 Query: 281 IQLAINVQIP----VDYGGL------GGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFP 430 Q +N+QI D G+ KAVYIDTEG+F ERV Q+AEG Sbjct: 116 HQTCVNLQIREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGA--------- 166 Query: 431 CHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTF 610 + ++ L + R + Q+ +E + ++++VIIDS+T Sbjct: 167 -----------GIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIKGGNNIKLVIIDSLTS 215 Query: 611 HFRQDFE---DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGD 781 FR +F LA R + YN V++ NQV K A+G Sbjct: 216 TFRNEFTGRGKLAERQQKLGRHMATLNKLADLYNCIVLVTNQVAAKPDAYFGVAEQAIGG 275 Query: 782 S-WSHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T R L KG++R A L SP LP + + +T KG++D Sbjct: 276 HVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPDSEAVFRITEKGIQD 322
>P50265:DLH1_CANAL Meiotic recombination protein DLH1 - Candida albicans (Yeast)| Length = 324 Score = 105 bits (262), Expect = 3e-22 Identities = 82/260 (31%), Positives = 118/260 (45%), Gaps = 11/260 (4%) Frame = +2 Query: 170 HITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 HITTGS ++ILGGGI +TE+ G GKTQL L + Q+P D GG G+ YI Sbjct: 86 HITTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYI 145 Query: 350 DTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQ 529 DTEG+F +R+ IAE + + + L I Y R + Q Sbjct: 146 DTEGTFRPDRIRSIAE--------------------RYGVDADICLENISYARALNSEHQ 185 Query: 530 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE---DLALRTRVXXXXXXXXXXXXXAY 700 I ++ L L E R++I+DS+ FR D+ +L R + Y Sbjct: 186 IELVEQLGNELAE-GTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAEDY 244 Query: 701 NLAVVLLNQVTTKFTEGSFQLTLAL-------GDSWSHSCTNRLIL-YWKGNERCAYLDK 856 N+AV L NQV + G+ L A G +H+ R++L +G ER A L Sbjct: 245 NIAVFLTNQVQS--DPGASALFAAADGRKPVGGHVLAHASATRILLRKGRGEERVAKLQD 302 Query: 857 SPSLPVASTPYAVTSKGVRD 916 SP++P Y + G++D Sbjct: 303 SPNMPEKECVYVIGEGGIKD 322
>Q9HJ68:RADA_THEAC DNA repair and recombination protein radA - Thermoplasma| acidophilum Length = 323 Score = 104 bits (260), Expect = 6e-22 Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 6/265 (2%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 ++L +S + +TTGS +L+D+LGGG+ + +TE G G GKTQ+ QLA+N +P + Sbjct: 79 EILERRKSIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEK 138 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GG + IDTE +F ER+ Q+A+ + P+ L I+ Sbjct: 139 GGFDSDVMMIDTENTFRPERIIQMAK--------------------SKGADPDETLKRIH 178 Query: 500 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVXXXXX 670 R + QI + + E+ +++++I+DS+T HFR ++ LA R ++ Sbjct: 179 VARAYNSHHQILLAEKAQDTAKEY-NIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHM 237 Query: 671 XXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLAL--GDSWSHSCTNRLIL-YWKGNERC 841 YN + + NQV+ + + F +A G+ H+ T R+ L KG +R Sbjct: 238 HDLLRFGTIYNAVIAVTNQVSAR-PDVFFGDPMAPIGGNIVGHTATFRIYLRKSKGGKRI 296 Query: 842 AYLDKSPSLPVASTPYAVTSKGVRD 916 A L SP LP T ++ +GV D Sbjct: 297 ARLIDSPYLPEGETVIQISEEGVSD 321
>O93748:RADA_CENSY DNA repair and recombination protein radA - Cenarchaeum symbiosum| Length = 398 Score = 104 bits (260), Expect = 6e-22 Identities = 78/264 (29%), Positives = 123/264 (46%), Gaps = 5/264 (1%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 ++ QS ITTG+ +L+ +LGGGI + +TE+ G G GKTQ + + Q P + Sbjct: 78 EIYKRRQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEE 137 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GGLGG +YIDTEG+F ERV IA+ N+ P L GI Sbjct: 138 GGLGGGVMYIDTEGTFRPERVVTIAKA--------------------NNMDPAKLLDGII 177 Query: 500 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---EDLALRTRVXXXXX 670 R + + Q+ ++ K + E ++++++I DS T FR ++ LA R + Sbjct: 178 VARAYNSSHQVLILEEAGKTIQE-ENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYI 236 Query: 671 XXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYWKG--NERCA 844 YN AV+ NQV++ T +G + + I + KG N+R A Sbjct: 237 RLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNKRVA 296 Query: 845 YLDKSPSLPVASTPYAVTSKGVRD 916 + SP P + + + +GV+D Sbjct: 297 KIIDSPHHPASEAVFELGERGVQD 320
>O35719:RA51B_MOUSE DNA repair protein RAD51 homolog 2 - Mus musculus (Mouse)| Length = 350 Score = 103 bits (258), Expect = 1e-21 Identities = 87/303 (28%), Positives = 134/303 (44%), Gaps = 32/303 (10%) Frame = +2 Query: 98 TAQKLLLQGAQNAWDMLSEEQ---SQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGK 268 T K Q A+++ + S ++T +L++ L GG+ C +TEI G PG GK Sbjct: 55 TVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGK 114 Query: 269 TQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHD-K 445 TQ I +++ +P GGL G VYIDTE +F ER+ +IAE S +YF Sbjct: 115 TQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAE---SRFPQYFNTEEKLL 171 Query: 446 ASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQD 625 +S + +L E G+ R+ S E+I K V++VI+DS+ R++ Sbjct: 172 LTSSRVHLCRELTCEGLLQ-RLESLEEEII-----------SKGVKLVIVDSIASVVRKE 219 Query: 626 FE-----DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKF---------------- 742 F+ ++ R + +++ V+L NQ+TT Sbjct: 220 FDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSGALPSQADLVSPADD 279 Query: 743 ------TEGSFQLTLALGDSWSHSCTNRLILYWKGNERCAYL-DKSPSLPVASTPYAVTS 901 T GS L ALG++W H RLIL + +ER L KSP S Y + Sbjct: 280 LSLSEGTSGSSCLVAALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIKG 339 Query: 902 KGV 910 +G+ Sbjct: 340 EGL 342
>Q61880:DMC1_MOUSE Meiotic recombination protein DMC1/LIM15 homolog - Mus musculus| (Mouse) Length = 340 Score = 103 bits (258), Expect = 1e-21 Identities = 84/284 (29%), Positives = 129/284 (45%), Gaps = 9/284 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A KL+ G A+ + HITTGS + +LGGGI +TE G GKTQ Sbjct: 75 EAANKLIEPGFLTAFQYSERRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 134 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P G GGK ++IDTE +F +R+ IA+ Sbjct: 135 LSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDIAD------------------- 175 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYL-EKFLGEHKDVRIVIIDSVTFHFRQDFE 631 + N+ E+ L + Y R + Q+ +++Y+ KF E +++IIDS+ FR DF Sbjct: 176 -RFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 234 Query: 632 ---DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVT----TKFTEGSFQLTLALGDSWS 790 +LA R + YN+AV + NQ+T T + G + Sbjct: 235 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILA 294 Query: 791 HSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 H+ T R+ L +G R A + SP +P +A+T+ G+ DA Sbjct: 295 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDA 338
>Q14565:DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog - Homo sapiens| (Human) Length = 340 Score = 103 bits (257), Expect = 1e-21 Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 9/284 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A KL+ G A++ + + HITTGS + +LGGGI +TE G GKTQ Sbjct: 75 EAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQ 134 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P G GGK ++IDTE +F +R + DI + F HD Sbjct: 135 LSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR--------LRDIADRFNVDHD---- 182 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYL-EKFLGEHKDVRIVIIDSVTFHFRQDFE 631 + L + Y R + Q+ +++Y+ KF E +++IIDS+ FR DF Sbjct: 183 --------AVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 234 Query: 632 ---DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVT----TKFTEGSFQLTLALGDSWS 790 +LA R + YN+AV + NQ+T T + G + Sbjct: 235 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILA 294 Query: 791 HSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 H+ T R+ L +G R A + SP +P +A+T+ G+ DA Sbjct: 295 HASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDA 338
>O73948:RADA_METVO DNA repair and recombination protein radA - Methanococcus voltae| Length = 322 Score = 102 bits (255), Expect = 2e-21 Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 15/287 (5%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A+ L G ++ D+L + + ++T S L+ +LGGG+ + VTE GV G GKTQ+ Sbjct: 56 ARDLCDLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 Query: 281 IQLAINVQIP---------VDYGGLG-GKAVYIDTEGSFMVERVYQIAEGCISDIMEYFP 430 Q +N+Q P V G + KAVYIDTEG+F ER+ Q+AE Sbjct: 116 HQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE----------- 164 Query: 431 CHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTF 610 + ++ L + R + Q+ +E + E ++++V+IDS+T Sbjct: 165 ---------HAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 Query: 611 HFRQDFE---DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGD 781 FR ++ LA R + +N V++ NQV+ K A+G Sbjct: 216 TFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGG 275 Query: 782 S-WSHSCTNR-LILYWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T R + KG++R A L SP LP A + +T KG++D Sbjct: 276 HIVGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD 322
>Q99133:RAD51_USTMA DNA repair protein RAD51 - Ustilago maydis (Smut fungus)| Length = 339 Score = 102 bits (255), Expect = 2e-21 Identities = 82/281 (29%), Positives = 129/281 (45%), Gaps = 9/281 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A +L+ G A + + ITTGS +L+ ILGGG+ +TE+ G GK+QL Sbjct: 78 AARLVPMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+PVD GG GK +YIDTE +F R+ +AE + Sbjct: 138 HTLAVTCQLPVDMGGGEGKCLYIDTENTFRPTRLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L E L + Y R + Q+ ++ + E + ++I+DS+T +R DF Sbjct: 178 FGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESR-FSLLIVDSLTSLYRTDFSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLAL-----GDSWSHS 796 +L+ R + +AVV+ NQV + +G+ T G+ +H+ Sbjct: 237 ELSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQ-VDGATAFTADAKKPIGGNIVAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 T RL L +GN+R + SP LP A +A+ +G+ D Sbjct: 296 STTRLSLRKGRGNQRICRIADSPCLPEADAVFAIGPEGIID 336
>Q48328:RADA_HALVO DNA repair and recombination protein radA - Halobacterium volcanii| (Haloferax volcanii) Length = 343 Score = 100 bits (248), Expect = 1e-20 Identities = 71/253 (28%), Positives = 128/253 (50%), Gaps = 13/253 (5%) Frame = +2 Query: 194 LNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMV 373 ++++LGGG+ + +TE+ G G GK+Q+ QLA+NVQ+P + GGLGG ++ID+E +F Sbjct: 89 VDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCIFIDSEDTFRP 148 Query: 374 ERVYQIAEGCISDIMEYFPCHHDKASS--GQENLQP--ESFLAGIYYFRICSYTEQIAVI 541 ER+ + G + +E + S +E ++ + FL I+ + + QI + Sbjct: 149 ERIDDMVRGLEDEALEATLDDREMEGSIDDEETIKALVDDFLDKIHVAKAFNSNHQILLA 208 Query: 542 NYLEKFLGEHKD----VRIVIIDSVTFHFRQDF---EDLALRTRVXXXXXXXXXXXXXAY 700 ++ GEH+D VR++ +DS+T HFR ++ +LA R + + Sbjct: 209 EKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHLHDLMRIGDLF 268 Query: 701 NLAVVLLNQVTTKFTEGSFQLTLALGDS-WSHSCTNRLIL-YWKGNERCAYLDKSPSLPV 874 N +++ NQV++ T +G + H+ T R+ L KG++R L +P+L Sbjct: 269 NTGILVTNQVSSNPDSYFGDPTQPIGGNILGHTSTFRIYLRKSKGDKRIVRLVDAPNLAD 328 Query: 875 ASTPYAVTSKGVR 913 V G++ Sbjct: 329 GEAIMRVQDAGLK 341
>P25454:RAD51_YEAST DNA repair protein RAD51 - Saccharomyces cerevisiae (Baker's yeast)| Length = 400 Score = 99.8 bits (247), Expect = 2e-20 Identities = 82/280 (29%), Positives = 127/280 (45%), Gaps = 8/280 (2%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A +L+ G A D +TTGS +L+ +LGGG+ +TE+ G GK+QL Sbjct: 136 AARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC 195 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ QIP+D GG GK +YIDTEG+F R+ IA+ + Sbjct: 196 HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ--------------------R 235 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L P+ L + Y R + Q+ +++ + + E + ++++DSV +R DF Sbjct: 236 FGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESR-FSLIVVDSVMALYRTDFSGRG 294 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEG-SFQLTLAL---GDSWSHSC 799 +L+ R + +AVV+ NQV + G +F G+ +HS Sbjct: 295 ELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAHSS 354 Query: 800 TNRL-ILYWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 T RL KG +R + SP LP A +A+ GV D Sbjct: 355 TTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYEDGVGD 394
>P37383:RAD51_CHICK DNA repair protein RAD51 homolog 1 - Gallus gallus (Chicken)| Length = 339 Score = 99.8 bits (247), Expect = 2e-20 Identities = 83/282 (29%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQL Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>P36601:RAD51_SCHPO DNA repair protein rhp51 - Schizosaccharomyces pombe (Fission| yeast) Length = 365 Score = 99.0 bits (245), Expect = 3e-20 Identities = 79/279 (28%), Positives = 123/279 (44%), Gaps = 7/279 (2%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GG+ +TE+ G GK+Q+ Sbjct: 100 ASKLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQIC 159 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GK +YIDTEG+F R+ +A+ + Sbjct: 160 HTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVAD--------------------R 199 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L E L + Y R + Q+ ++ + E + ++++DS T +R DF Sbjct: 200 YGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESR-FSLLVVDSCTALYRTDFSGRG 258 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLAL---GDSWSHSCT 802 +L+ R + +AVV+ NQV + SF G+ +HS T Sbjct: 259 ELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQVDGISFNPDPKKPIGGNILAHSST 318 Query: 803 NRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 RL L +G +R + SP LP + +A+ S GV D Sbjct: 319 TRLSLRKGRGEQRICKIYDSPCLPESEAIFAINSDGVGD 357
>P70099:RAD51_CRIGR DNA repair protein RAD51 homolog 1 - Cricetulus griseus (Chinese| hamster) Length = 339 Score = 99.0 bits (245), Expect = 3e-20 Identities = 83/282 (29%), Positives = 125/282 (44%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ T G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFTADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKVYDSPCLPEAEAMFAINADGVGDA 337
>Q06609:RAD51_HUMAN DNA repair protein RAD51 homolog 1 - Homo sapiens (Human)| Length = 339 Score = 98.6 bits (244), Expect = 4e-20 Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>Q91918:RA51A_XENLA DNA repair protein RAD51 homolog A - Xenopus laevis (African clawed| frog) Length = 336 Score = 98.6 bits (244), Expect = 4e-20 Identities = 81/282 (28%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + I+TGS L+ +L GG+ +TE+ G GKTQL Sbjct: 75 AAKLVPMGFTTATEFHQRRSEIIQISTGSKELDKLLQGGVETGSITEMFGEFRTGKTQLC 134 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 135 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 174 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 175 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESR-YALLIVDSATALYRTDYSGRG 233 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 234 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 292 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 293 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 334
>Q9XED7:R51A2_MAIZE DNA repair protein RAD51 homolog B - Zea mays (Maize)| Length = 340 Score = 98.2 bits (243), Expect = 5e-20 Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 8/282 (2%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A KL+ G +A + ++ +TTGS L+ IL GGI +TE+ G GKTQ Sbjct: 77 EAASKLVPLGFTSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITEMYGEFRSGKTQ 136 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P+D GG GKA+YID EG+F +R+ QIA+ Sbjct: 137 LCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRILQIAD------------------- 177 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + L L + Y R + Q ++ + E + ++++DS T +R DF Sbjct: 178 -RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETR-FALMVVDSATALYRTDFSG 235 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF----QLTLALGDSWSH 793 +L+ R + +AVV+ NQV + + Q+ G+ +H Sbjct: 236 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFAGPQIKPIGGNIMAH 295 Query: 794 SCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 + T RL L +G ER + SP L A + ++S+GV D Sbjct: 296 ASTTRLFLRKGRGEERICKVISSPCLAEAEARFQISSEGVTD 337
>Q91917:RA51B_XENLA DNA repair protein RAD51 homolog B - Xenopus laevis (African clawed| frog) Length = 336 Score = 97.8 bits (242), Expect = 7e-20 Identities = 82/282 (29%), Positives = 123/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + I TGS L+ +L GGI +TE+ G GKTQL Sbjct: 75 AAKLVPMGFTTATEFHQRRSEIIQIGTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLC 134 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 135 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 174 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 175 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESR-YALLIVDSATALYRTDYSGRG 233 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 234 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 292 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 293 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 334
>Q08297:RAD51_MOUSE DNA repair protein RAD51 homolog 1 - Mus musculus (Mouse)| Length = 339 Score = 97.4 bits (241), Expect = 9e-20 Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>Q8MKI8:RAD51_CANFA DNA repair protein RAD51 homolog 1 - Canis familiaris (Dog)| Length = 339 Score = 97.4 bits (241), Expect = 9e-20 Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>Q2KJ94:RAD51_BOVIN DNA repair protein RAD51 homolog 1 - Bos taurus (Bovine)| Length = 339 Score = 97.4 bits (241), Expect = 9e-20 Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + +AVV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>P94102:RAD51_ARATH DNA repair protein RAD51 homolog 1 - Arabidopsis thaliana| (Mouse-ear cress) Length = 342 Score = 97.1 bits (240), Expect = 1e-19 Identities = 82/283 (28%), Positives = 129/283 (45%), Gaps = 9/283 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A KL+ G +A + ++ Q IT+GS L+ +L GGI +TE+ G GKTQ Sbjct: 79 EAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKVLEGGIETGSITELYGEFRSGKTQ 138 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P+D GG GKA+YID EG+F +R+ QIA+ Sbjct: 139 LCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIAD------------------- 179 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + L L + Y R + Q ++ + E + ++I+DS T +R DF Sbjct: 180 -RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETR-FALLIVDSATALYRTDFSG 237 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF-----QLTLALGDSWS 790 +L+ R + +AVV+ NQV + +GS Q G+ + Sbjct: 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ-VDGSALFAGPQFKPIGGNIMA 296 Query: 791 HSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T RL L + ER + SP LP A + ++++GV D Sbjct: 297 HATTTRLALRKGRAEERICKVISSPCLPEAEARFQISTEGVTD 339
>Q9SK02:RA51B_ARATH DNA repair protein RAD51 homolog 2 - Arabidopsis thaliana| (Mouse-ear cress) Length = 370 Score = 96.3 bits (238), Expect = 2e-19 Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 22/296 (7%) Frame = +2 Query: 89 PNKTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGK 268 P ++A+ LL + +N E H+ T L+D L GGI +TE+ G PG+GK Sbjct: 63 PCQSARSLLEKKVEN-------EHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGK 115 Query: 269 TQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKA 448 +Q ++LA++ PV YGGL G+ +YID E F RV ++ +E FP Sbjct: 116 SQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMG-------LESFPEVFHLK 168 Query: 449 SSGQENLQPESFLAG-IYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQD 625 QE +AG I R S I L+ + +++ V++++IDS+T + Sbjct: 169 GMAQE-------MAGRILVLRPTSLANFTESIQELKNSILQNQ-VKLLVIDSMTALLSGE 220 Query: 626 FEDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTT----KFTEGSFQ----------- 760 + A R + +V+ NQV + + ++ SFQ Sbjct: 221 NKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNT 280 Query: 761 ------LTLALGDSWSHSCTNRLILYWKGNERCAYLDKSPSLPVASTPYAVTSKGV 910 L ALG +W+H+ T RL+L K +R + KSP P + P+ +TS G+ Sbjct: 281 KTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGI 336
>O77507:RAD51_RABIT DNA repair protein RAD51 homolog 1 - Oryctolagus cuniculus (Rabbit)| Length = 339 Score = 95.9 bits (237), Expect = 3e-19 Identities = 81/282 (28%), Positives = 123/282 (43%), Gaps = 9/282 (3%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G A + ITTGS L+ +L GGI +TE+ G GKTQ+ Sbjct: 78 AAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 137 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+D GG GKA+YIDTEG+F ER+ +AE + Sbjct: 138 HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE--------------------R 177 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE--- 631 L L + Y R + Q ++ + E + ++I+DS T +R D+ Sbjct: 178 YGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDYSGRG 236 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTL-----ALGDSWSHS 796 +L+ R + + VV+ NQV + +G+ G+ +H+ Sbjct: 237 ELSARQMHLARFLRMLLRLADEFGVTVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHA 295 Query: 797 CTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDA 919 T RL L +G R + SP LP A +A+ + GV DA Sbjct: 296 STTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 337
>Q27297:RAD51_DROME DNA repair protein Rad51 homolog - Drosophila melanogaster (Fruit| fly) Length = 336 Score = 94.7 bits (234), Expect = 6e-19 Identities = 83/283 (29%), Positives = 120/283 (42%), Gaps = 7/283 (2%) Frame = +2 Query: 101 AQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLG 280 A KL+ G +A ++TGS L+ +LGGGI +TEI G GKTQL Sbjct: 75 ANKLVPLGFLSARTFYQMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLC 134 Query: 281 IQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQ 460 LA+ Q+P+ G GK +YIDTE +F ER+ IA+ + Sbjct: 135 HTLAVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQ--------------------R 174 Query: 461 ENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF---E 631 L L + + R + +Q +I L E + ++I+DS +R D+ Sbjct: 175 YKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESR-YALLIVDSAMALYRSDYIGRG 233 Query: 632 DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKF--TEGSFQLTLALGDS-WSHSCT 802 +LA R + +AVV+ NQVT G F +G +HS T Sbjct: 234 ELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSST 293 Query: 803 NRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRDAGSS 928 RL L KG R + SP LP + +A+ G+ DA S Sbjct: 294 TRLYLRKGKGETRICKIYDSPCLPESEAMFAILPDGIGDARES 336
>Q40134:RAD51_SOLLC DNA repair protein RAD51 homolog - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 342 Score = 93.2 bits (230), Expect = 2e-18 Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 9/283 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A KL+ G +A + ++ IT+GS L+ IL GGI +TEI G GKTQ Sbjct: 79 EAASKLVPLGFTSASQLHAQRLEIIQITSGSKELDKILEGGIETGSITEIYGEFRCGKTQ 138 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L L + Q+P+D GG GKA+YID EG+F +R+ QIA+ Sbjct: 139 LCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIAD------------------- 179 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + L L + Y R + Q ++ + E + ++I+DS T +R DF Sbjct: 180 -RYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETR-FALMIVDSATALYRTDFSG 237 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF-----QLTLALGDSWS 790 +L+ R + +AVV+ NQV + +GS Q+ G+ + Sbjct: 238 RGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ-VDGSAVFAGPQIKPIGGNIMA 296 Query: 791 HSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T RL L + ER + SP L A + ++ +GV D Sbjct: 297 HASTTRLALRKGRAEERICKVVSSPCLAEAEARFQISVEGVTD 339
>Q67EU8:R51A1_MAIZE DNA repair protein RAD51 homolog A - Zea mays (Maize)| Length = 340 Score = 91.7 bits (226), Expect = 5e-18 Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 9/283 (3%) Frame = +2 Query: 95 KTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + A K++ G +A + ++ +TTGS L+ IL GGI +TEI G GKTQ Sbjct: 77 EAASKIVPLGFTSASQLHAQRLEIIQVTTGSRELDKILEGGIETGSITEIYGEFRSGKTQ 136 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASS 454 L + Q+P+D GG GKA+YID EG+F +R+ QIA+ Sbjct: 137 LCHTPCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIAD------------------- 177 Query: 455 GQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFE- 631 + L L + Y R + Q ++ + E + ++++DS T +R DF Sbjct: 178 -RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETR-FALMVVDSATALYRTDFSG 235 Query: 632 --DLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSF-----QLTLALGDSWS 790 +L+ R + +AVV+ NQV + +GS Q G+ + Sbjct: 236 RGELSARQMHMAKFLRSLQKLADEFGVAVVITNQVVAQ-VDGSAMFAGPQFKPIGGNIMA 294 Query: 791 HSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 H+ T RL L +G ER + SP L A + + S+G+ D Sbjct: 295 HASTTRLALRKGRGEERICKVISSPCLAEAEARFQLASEGIAD 337
>Q5JET4:RADA_PYRKO DNA repair and recombination protein radA [Contains: Pko radA intein]| - Pyrococcus kodakaraensis (Thermococcus kodakaraensis) Length = 836 Score = 87.8 bits (216), Expect = 7e-17 Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Frame = +2 Query: 269 TQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKA 448 TQL LA+ VQ P + GGLGG ++IDTE +F ER+ QIAE Sbjct: 632 TQLAHTLAVMVQKPPEEGGLGGSVIWIDTENTFRPERIKQIAE----------------- 674 Query: 449 SSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGE----HKDVRIVIIDSVTFHF 616 L PE L IY R + Q+ ++ E+ + E + V+++++DS+ HF Sbjct: 675 ---NRGLDPEETLKNIYVARAFNSNHQMLLVEKAEEIIKEKAESDRPVKLLVVDSLMAHF 731 Query: 617 RQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS- 784 R ++ LA R + Y++AV + NQV K T +G Sbjct: 732 RAEYVGRGTLAERQQKLAKHLADLHRLADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHI 791 Query: 785 WSHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 +HS T R+ L K +R A L SP LP + +T KGV D Sbjct: 792 LAHSATLRVYLRKGKAGKRVARLIDSPHLPEGEAVFRITEKGVED 836 Score = 34.7 bits (78), Expect = 0.72 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGK 268 I+TGS +L+ +LGGGI + +TE+ G G GK Sbjct: 118 ISTGSKALDKLLGGGIETQAITEVFGEFGSGK 149
>O58001:RADA_PYRHO DNA repair and recombination protein radA [Contains: Pho radA| intein] - Pyrococcus horikoshii Length = 529 Score = 86.3 bits (212), Expect = 2e-16 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Frame = +2 Query: 269 TQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKA 448 TQL LA+ VQ+P + GGL G ++IDTE +F ER+ +IA+ Sbjct: 325 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAK----------------- 367 Query: 449 SSGQENLQPESFLAGIYYFRICSYTEQIAVINYLE----KFLGEHKDVRIVIIDSVTFHF 616 L P+ L IY R + Q+ ++ E + L K V+++I+DS+T HF Sbjct: 368 ---NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHF 424 Query: 617 RQDF---EDLALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDS- 784 R ++ LA R + Y +AV + NQV + T +G Sbjct: 425 RSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHI 484 Query: 785 WSHSCTNRLIL-YWKGNERCAYLDKSPSLPVASTPYAVTSKGVRD 916 +HS T R+ L KG +R A L +P LP + +T KG+ D Sbjct: 485 LAHSATLRVYLRKGKGGKRVARLIDAPHLPEGEAVFRITEKGIED 529 Score = 38.5 bits (88), Expect = 0.050 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGK 268 + L + +S I+TGS SL+ +LGGGI + +TE+ G G GK Sbjct: 110 EYLKKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 152
>Q08DH8:XRCC3_BOVIN DNA-repair protein XRCC3 - Bos taurus (Bovine)| Length = 341 Score = 84.7 bits (208), Expect = 6e-16 Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 28/307 (9%) Frame = +2 Query: 98 TAQKLLLQGAQNAWDMLSEE----QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVG 265 +A L G A +L +E + + ++ G L+ +L GG+ +TE+ G G Sbjct: 53 SASLLRGHGVCTALHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAG 112 Query: 266 KTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDK 445 KTQL +QL + VQ+P +GGLG AVY+ TE +F R+ Q+ Sbjct: 113 KTQLALQLCLAVQLPPRHGGLGAGAVYVCTEDAFPSRRLQQLI----------------- 155 Query: 446 ASSGQENLQPE--SFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDV-------RIVIID 598 + Q+ L+ + + F + E A ++ L + + E V R+V+ID Sbjct: 156 --AQQQRLRADVPGHVISKIRFGHQIFIEHAADVDTLLQCVREKVPVLLARGMARLVVID 213 Query: 599 SVTFHFRQDFED--LALRTRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTE-----GSF 757 SV FR +F+ LALR + A+ V+ +NQVT E G Sbjct: 214 SVAAPFRCEFDGAALALRAQRLLALGAELRRLSCAFRSPVLCVNQVTEAVEEQDLVAGPP 273 Query: 758 QLTLALGDSWSHSCTNRLILYWKGNE--------RCAYLDKSPSLPVASTPYAVTSKGVR 913 ++ ALG +W++ RL+ + E R + +P LP +S Y + ++GVR Sbjct: 274 GMSPALGITWANQLLVRLLADRQRPEEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVR 333 Query: 914 DAGSSSC 934 ++C Sbjct: 334 GMPGTAC 340
>Q9FKM5:XRCC3_ARATH DNA-repair protein XRCC3 homolog - Arabidopsis thaliana (Mouse-ear| cress) Length = 304 Score = 84.0 bits (206), Expect = 1e-15 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 ++L + + +TTG L+ L GGI C +TEI G GKTQL +QL++ Q+P+ + Sbjct: 10 NLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISH 69 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 GGL G ++Y+ +E F R++Q++ + ++D ++ Sbjct: 70 GGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCD------------HVF 117 Query: 500 YFRICSYTEQIAVINYLEKFLGEHK---DVRIVIIDSVTFHFRQDFE----DLALRTRVX 658 + S ++ ++ F+G K ++++++DSV FR +F+ DL R+ + Sbjct: 118 VQNVHSVDHLFDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLF 177 Query: 659 XXXXXXXXXXXXAYNLAVVLLNQVT 733 ++LA+V+ NQVT Sbjct: 178 FKISGKLKQLASKFDLAIVITNQVT 202
>O43542:XRCC3_HUMAN DNA-repair protein XRCC3 - Homo sapiens (Human)| Length = 346 Score = 80.5 bits (197), Expect = 1e-14 Identities = 74/269 (27%), Positives = 116/269 (43%), Gaps = 20/269 (7%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVY 346 + ++ G L+ +L GG+ +TE+ G GKTQL +QL + VQ P +GGL AVY Sbjct: 80 QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139 Query: 347 IDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTE 526 I TE +F +R+ Q +M P + E LQ F + I+ + Sbjct: 140 ICTEDAFPHKRLQQ--------LMAQQP--RLRTDVPGELLQKLRFGSQIFIEHVADVDT 189 Query: 527 QIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFEDLAL--RTRVXXXXXXXXXXXXXAY 700 + +N L R+V+IDSV FR +F+ A R R A+ Sbjct: 190 LLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAF 249 Query: 701 NLAVVLLNQVTTKFTEGSF----------QLTLALGDSWSHSCTNRLILYWKGNERCAY- 847 V+ +NQVT E +++ ALG +W++ RL+ E A Sbjct: 250 QSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALG 309 Query: 848 -------LDKSPSLPVASTPYAVTSKGVR 913 + +P LP +S Y ++++GVR Sbjct: 310 CPARTLRVLSAPHLPPSSCSYTISAEGVR 338
>Q9CXE6:XRCC3_MOUSE DNA-repair protein XRCC3 - Mus musculus (Mouse)| Length = 349 Score = 79.3 bits (194), Expect = 3e-14 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 23/276 (8%) Frame = +2 Query: 155 EQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGG 334 EQ Q+ ++ G L+ LGGG+ + +T + G GKTQL +QL + VQ P YGGL Sbjct: 77 EQHQR-LSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQFPRQYGGLEA 135 Query: 335 KAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRIC 514 AVYI TE +F +R++Q+ + + +E ++ F I+ Sbjct: 136 GAVYICTEDAFPSKRLWQLIA----------QQRRLRTDAPEELIEKIRFSNHIFIEHAA 185 Query: 515 SYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDF--EDLALRTRVXXXXXXXXXXX 688 + ++ L R+V++DS+ FR +F + A+R ++ Sbjct: 186 DVDTLLECVSKKVPILLSRGMARLVVVDSIAAPFRCEFHLQASAIRAKLLLSLGATLRRL 245 Query: 689 XXAYNLAVVLLNQVTTKFTE----------GSFQLTLALGDSWSHSCTNRLIL------- 817 + V+ +NQVT + +L+ ALG +W++ RL++ Sbjct: 246 SSTFRSPVLCINQVTDMVEDQQSVSRSLGASEERLSPALGITWANQLLMRLMVDRTHEDD 305 Query: 818 ----YWKGNERCAYLDKSPSLPVASTPYAVTSKGVR 913 + R + +P LP++S Y V+ +G+R Sbjct: 306 VTTGLPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIR 341
>P25301:RAD57_YEAST DNA repair protein RAD57 - Saccharomyces cerevisiae (Baker's yeast)| Length = 460 Score = 77.8 bits (190), Expect = 7e-14 Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 7/205 (3%) Frame = +2 Query: 146 LSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGG 325 +S + + TT +++++LGGGI +TEI G GK+QL +QLA++VQ+ GG Sbjct: 91 ISPDNGPECFTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGG 150 Query: 326 LGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYF 505 LGGK VYI TEG +R+ E +S Y +K Q N I+ Sbjct: 151 LGGKCVYITTEGDLPTQRL----ESMLSSRPAY-----EKLGITQSN---------IFTV 192 Query: 506 RICSYTEQIAVINYLEKFLGEHK--DVRIVIIDSVTFHFRQDFEDLALR-----TRVXXX 664 Q +IN L E +++VIIDS++ H R + ++ + R Sbjct: 193 SCNDLINQEHIINVQLPILLERSKGSIKLVIIDSISHHLRVELQNKSFRESQENKNYLDR 252 Query: 665 XXXXXXXXXXAYNLAVVLLNQVTTK 739 Y+L+VV+ NQV K Sbjct: 253 MAEKLQILAHDYSLSVVVANQVGDK 277
>Q9UUL2:RAD57_SCHPO DNA repair protein rhp57 - Schizosaccharomyces pombe (Fission| yeast) Length = 354 Score = 76.3 bits (186), Expect = 2e-13 Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 44/282 (15%) Frame = +2 Query: 161 SQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKA 340 + K++TTG L++ L GGI ++TEI G G GK+Q +QL + VQ+P+ GG+ A Sbjct: 71 TSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAA 130 Query: 341 VYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSY 520 V+I TE +R++++A Y P + KA ++++ ++ +Y Sbjct: 131 VFISTESGLETKRLFELA--------RYLPERYPKAD--KKDIIIKNPGDRVYTILCPDL 180 Query: 521 TEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFR------------QDFEDLALRTRVXXX 664 Q +I Y L + +VI+DSV ++R +D +++A R Sbjct: 181 ESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGK 240 Query: 665 XXXXXXXXXXAYNLAVVLLNQVTTKFTE-----GSFQLTL------------------AL 775 + AVV+ NQV+ + G F L +L Sbjct: 241 LAMTLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSL 300 Query: 776 GDSWSHSCTNRLILYWKGNE---------RCAYLDKSPSLPV 874 G W+++ + RL L K + R Y SP L V Sbjct: 301 GLVWTNNISTRLALIKKTDSATNNSGRIFRVVYSPNSPRLDV 342
>O75771:RA51D_HUMAN DNA repair protein RAD51 homolog 4 - Homo sapiens (Human)| Length = 328 Score = 69.3 bits (168), Expect = 3e-11 Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 14/261 (5%) Frame = +2 Query: 131 NAWDMLSE-EQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 N D+ E + S ++TG GSL+ +L G++ EVTEI G PG GKTQ+ + +A NV Sbjct: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125 Query: 308 PVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL 487 GL +Y+D+ G R+ Q+ + K +E + + Sbjct: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQA--------------KTQDEEEQAEALRRI 167 Query: 488 AGIYYFRICSYTEQIAVI--NYLEKFLGEHKDVRIVIIDSVTFHFR-----QDFEDLALR 646 ++ F I + + + ++ G V++V++DSVT Q E LAL Sbjct: 168 QVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALM 227 Query: 647 TRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYW- 823 ++ +AVV+ N +T G +L ALG SWS + R++L Sbjct: 228 MQLARELKTLARD----LGMAVVVTNHITRDRDSG--RLKPALGRSWSFVPSTRILLDTI 281 Query: 824 -----KGNERCAYLDKSPSLP 871 G R A L KS P Sbjct: 282 EGAGASGGRRMACLAKSSRQP 302
>P95547:RADB_PYRKO DNA repair and recombination protein radB - Pyrococcus| kodakaraensis (Thermococcus kodakaraensis) Length = 220 Score = 67.4 bits (163), Expect = 1e-10 Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 8/256 (3%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAV-YI 349 ++TG+ SL+ +LGGG +T++ G GKT L +Q G L GK V Y+ Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQT----------GLLSGKKVAYV 51 Query: 350 DTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQ 529 DTEG F ER+ Q+AE L PE L+ F + EQ Sbjct: 52 DTEGGFSPERLVQMAE--------------------TRGLNPEEALSRFILFTPSDFKEQ 91 Query: 530 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFEDLALRTRVXXXXXXXXXXXXXAYNLA 709 VI L+K + + +V++DS+T H+R + L + +N+ Sbjct: 92 RRVIGSLKKTV--DSNFALVVVDSITAHYRAEENRSGLIAEL-SRQLQVLLWIARKHNIP 148 Query: 710 VVLLNQV----TTKFTEGSFQLTLALGDSWSHSCTN--RLILYWKGNERCAYLDKSPSLP 871 V+++NQV T+ T+ + TL + C + RL K R A L++ P Sbjct: 149 VIVINQVHFDSRTEMTKPVAEQTL------GYRCKDILRLDKLPKPGLRVAVLERHRFRP 202 Query: 872 VASTPY-AVTSKGVRD 916 Y +T +G+ D Sbjct: 203 EGLMAYFRITERGIED 218
>Q2HJ51:RA51D_BOVIN DNA repair protein RAD51 homolog 4 - Bos taurus (Bovine)| Length = 326 Score = 66.2 bits (160), Expect = 2e-10 Identities = 74/261 (28%), Positives = 115/261 (44%), Gaps = 14/261 (5%) Frame = +2 Query: 131 NAWDMLSE-EQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 N D+ E + S ++TG GSL+ +L G++ EVTEI G PG GKTQ+ + +A +V Sbjct: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGAPGSGKTQVCLCVAAHVA- 125 Query: 308 PVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL 487 GL +YID+ G R+ Q+ + D ++A + LQ + Sbjct: 126 ----HGLQQNVLYIDSNGGLTASRILQLLQARTPD-------EEEQAGA----LQRIQVV 170 Query: 488 AGIYYFRICSYTEQI--AVINYLEKFLGEHKDVRIVIIDSVTFHFR-----QDFEDLALR 646 F++ + + AV + G +++V++DSV Q E LAL Sbjct: 171 RAFDIFQMLDVLQDLRGAVSQQVSSSSG---TLKVVVVDSVAAVVAPLLGGQQREGLALM 227 Query: 647 TRVXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYWK 826 ++ ++AV++ N +T G QL ALG SWS + RL+L Sbjct: 228 MQLARELKTLARD----LSVAVLVTNHMTRDRDSG--QLKPALGRSWSFVPSTRLLLDST 281 Query: 827 ------GNERCAYLDKSPSLP 871 G+ R L KSP LP Sbjct: 282 QSSGSLGSWRVVCLTKSPRLP 302
>Q9HPF2:RADB_HALSA DNA repair and recombination protein radB - Halobacterium| salinarium (Halobacterium halobium) Length = 236 Score = 65.1 bits (157), Expect = 5e-10 Identities = 69/264 (26%), Positives = 108/264 (40%), Gaps = 7/264 (2%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGK 337 + H+ TG G+L+++LGGG+ VT++ G P GKT + + A+ GG Sbjct: 3 EDDTHLPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTT------AAAGGL 56 Query: 338 AVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICS 517 AVY+DTEG + R Q+ E +D PE+ A + Sbjct: 57 AVYVDTEG-LSLARFQQLLEARATD--------------------PEAASANVIVSDAHD 95 Query: 518 YTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFR-----QDFEDLALRTRVXXXXXXXXX 682 + EQ + F ++++DSVT +R D ALR Sbjct: 96 FDEQAQAVRDTADFADR---ADLIVVDSVTGFYRLARGGDDTTGDALRQ--VADQITHLL 150 Query: 683 XXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLIL-YWKGNERCAYLDKS 859 ++LAVV+ NQV T S + G + +H L L ++G R A L+K Sbjct: 151 SLARKHDLAVVVTNQVFTDVDNDSDRARPLGGHTLAHWTGTVLRLDRFRGGTRRATLEKH 210 Query: 860 PSLPVAS-TPYAVTSKGVRDAGSS 928 + P + +T G+ DA S+ Sbjct: 211 RAKPDGEHAQFQITDGGI-DAASA 233
>O57859:RADB_PYRHO DNA repair and recombination protein radB - Pyrococcus horikoshii| Length = 228 Score = 64.7 bits (156), Expect = 6e-10 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 +TTG L+++LGGG+ + + ++ G GKT +Q+ + + GK Y+D Sbjct: 13 LTTGVKGLDELLGGGVARRVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQI 532 TEG F ER+ Q+A L PE L+ F EQ Sbjct: 64 TEGGFSPERLAQMAR--------------------SRGLDPEKALSKFIIFEPMDLNEQR 103 Query: 533 AVINYLEKFLGEHKDVRIVIIDSVTFHFR----QDFEDLALRTRVXXXXXXXXXXXXXAY 700 VI+ L+ + E +V++DS+T H+R +++ +LA + +V Sbjct: 104 RVISKLKTIVDE--KFSLVVVDSLTAHYRAEGSKNYGELAKQLQVLQWLARRK------- 154 Query: 701 NLAVVLLNQV 730 N+AV+++NQV Sbjct: 155 NVAVIVINQV 164
>Q9V2F6:RADB_PYRAB DNA repair and recombination protein radB - Pyrococcus abyssi| Length = 239 Score = 63.5 bits (153), Expect = 1e-09 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 4/190 (2%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 +TTG L+++LGGG+ + ++ G GKT +Q+ + + GK Y+D Sbjct: 13 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 63 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQI 532 TEG F ER+ Q+AE L PE L+ F EQ Sbjct: 64 TEGGFSPERLKQMAE--------------------SRGLDPEKALSKFIIFEPMDLNEQR 103 Query: 533 AVINYLEKFLGEHKDVRIVIIDSVTFHFR----QDFEDLALRTRVXXXXXXXXXXXXXAY 700 +I+ L+ + + +V++DS+T H+R +D +LA + +V Sbjct: 104 RIISKLKTVVSD--KFSLVVVDSLTAHYRAEGSRDHVELAKQLQVLQWLARKK------- 154 Query: 701 NLAVVLLNQV 730 N+AV+++NQV Sbjct: 155 NVAVIVVNQV 164
>O55230:RA51D_MOUSE DNA repair protein RAD51 homolog 4 - Mus musculus (Mouse)| Length = 329 Score = 63.2 bits (152), Expect = 2e-09 Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 13/260 (5%) Frame = +2 Query: 131 NAWDMLSE-EQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 N D+ E + S ++TG GSL+ +L G++ EVTEI G PG GKTQ+ + +A NV Sbjct: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVA- 125 Query: 308 PVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL 487 L +Y+D+ G R+ Q+ + D +K +S + +Q + Sbjct: 126 ----HSLQQNVLYVDSNGGMTASRLLQLLQARTQD--------EEKQASALQRIQ---VV 170 Query: 488 AGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFR-----QDFEDLALRTR 652 FR+ + + ++ V++VI+DSVT Q E LAL + Sbjct: 171 RSFDIFRMLDMLQDLRG-TIAQQEATSSGAVKVVIVDSVTAVVAPLLGGQQREGLALMMQ 229 Query: 653 VXXXXXXXXXXXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLIL----- 817 + +AVV+ N +T + F+ ALG SWS + R++L Sbjct: 230 LARELKILARD----LGVAVVVTNHLTRDWDGRRFK--PALGRSWSFVPSTRILLDVTEG 283 Query: 818 --YWKGNERCAYLDKSPSLP 871 ++R L KSP P Sbjct: 284 AGTLGSSQRTVCLTKSPRQP 303
>O28184:RADB_ARCFU DNA repair and recombination protein radB - Archaeoglobus fulgidus| Length = 221 Score = 61.2 bits (147), Expect = 7e-09 Identities = 60/196 (30%), Positives = 81/196 (41%), Gaps = 3/196 (1%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I TGS ++ +LGGG+ VT+I G G GKT L + LA N K YID Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQF-------KVAYID 58 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQI 532 TEG ERV QI G E L F+ +Y FR +Q Sbjct: 59 TEG-LSGERVRQI--------------------FGDERLFSNVFVYEVYRFR-----QQG 92 Query: 533 AVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFEDLALRTRV---XXXXXXXXXXXXXAYN 703 I EK K V++VI+D T +R + ED + ++ Y+ Sbjct: 93 VAIQEAEKLCRSEK-VKLVIVDCFTSLYRSELEDDRKQIKIKRELTSQLTFLLGMARKYD 151 Query: 704 LAVVLLNQVTTKFTEG 751 +AVV+ NQ+ T G Sbjct: 152 VAVVITNQMFTDVGSG 167
>P81415:RADB_PYRFU DNA repair and recombination protein radB - Pyrococcus furiosus| Length = 225 Score = 60.8 bits (146), Expect = 9e-09 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 4/190 (2%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 +TTG L+++LGGG+ + ++ G GKT +Q+ + + GK Y+D Sbjct: 7 LTTGVKGLDELLGGGVAKGVILQVYGPFATGKTTFAMQVGLLNE---------GKVAYVD 57 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQI 532 TEG F ER+ Q+AE NL E L F EQ Sbjct: 58 TEGGFSPERLAQMAE--------------------SRNLDVEKALEKFVIFEPMDLNEQR 97 Query: 533 AVINYLEKFLGEHKDVRIVIIDSVTFHFR----QDFEDLALRTRVXXXXXXXXXXXXXAY 700 VI L+ + E +V++DS T H+R +++ +L+ + +V Sbjct: 98 QVIARLKNIVNE--KFSLVVVDSFTAHYRAEGSREYGELSKQLQVLQWIARRK------- 148 Query: 701 NLAVVLLNQV 730 N+AV+++NQV Sbjct: 149 NVAVIVVNQV 158
>O27728:RADB_METTH DNA repair and recombination protein radB - Methanobacterium| thermoautotrophicum Length = 234 Score = 57.8 bits (138), Expect = 8e-08 Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 1/227 (0%) Frame = +2 Query: 146 LSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGG 325 L + + I T S S++ ILGGG+ + +T+ G PG GKT + I+LA V+ Sbjct: 4 LRDMGENRRIPTES-SIDRILGGGVERRTITQFYGPPGSGKTNITIKLA------VETAR 56 Query: 326 LGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYF 505 G V+IDTEG VER+ Q++ + + I F Sbjct: 57 RGKNTVFIDTEGGLSVERIRQVSGDIFDRVAD-----------------------SIIVF 93 Query: 506 RICSYTEQIAVINYLEKFLGEHKD-VRIVIIDSVTFHFRQDFEDLALRTRVXXXXXXXXX 682 S+TEQ + FL H D +V++DS +R + + Sbjct: 94 EPSSFTEQGEALQRTFSFLKTHGDSTDLVVLDSAVALYRLKEGNASSFNLDLGRQMFLLL 153 Query: 683 XXXXAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYW 823 ++LA V+ NQ+ + +T G + L+ YW Sbjct: 154 QMARRFDLAAVITNQI--------YSITGDDGREYVSPVGGTLLRYW 192
>O50248:RADB_METMP DNA repair and recombination protein radB - Methanococcus| maripaludis Length = 216 Score = 52.0 bits (123), Expect = 4e-06 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%) Frame = +2 Query: 194 LNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMV 373 L ++L G I K +T+I G PGVGKT + I I++ ++ G VYIDTEGS + Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICI---ISMLKAIEN---GKNVVYIDTEGSLSI 55 Query: 374 ERVYQIA----EGCISDIMEYFPCHHDKASSGQENL 469 ER+ Q++ + + +I+ Y P ++ S E + Sbjct: 56 ERIKQLSGKDCDELLKNIIIYEPSSFEEQSEALEKI 91
>Q57702:RADB_METJA DNA repair and recombination protein radB - Methanococcus| jannaschii Length = 212 Score = 51.2 bits (121), Expect = 7e-06 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 5/244 (2%) Frame = +2 Query: 194 LNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMV 373 L +IL G +T+I G PGVGKT + I +IN GK +YIDTEG + Sbjct: 2 LKEILLGNAEKGIITQIYGPPGVGKTNICIINSINAVN-------SGKVIYIDTEGGLSI 54 Query: 374 ERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLE 553 ER+ QIA ++E + + + EQ +I Sbjct: 55 ERIKQIASNNYKIVLE-----------------------NMIIYNAFDFYEQDKIIQKEL 91 Query: 554 KFLGEHKDVRIVIIDSVTFHFRQDFEDLA----LRTRVXXXXXXXXXXXXXAYNLAVVLL 721 + + ++++D++T +R + D A + ++ NLAV++ Sbjct: 92 PLI--TNNASLIVVDNITSLYRLELSDEANKNIMLNKMLGNQVKTLLKLAKTNNLAVIIT 149 Query: 722 NQVTTKFTEGSFQLTLA-LGDSWSHSCTNRLILYWKGNERCAYLDKSPSLPVASTPYAVT 898 NQV + T F+ + L + WS C RL +R A L+K + + Sbjct: 150 NQV--RETVNGFEASGGRLLEYWS-KCIVRLEKL--NGDRLAILEKHLHAGEERVKFRIV 204 Query: 899 SKGV 910 +G+ Sbjct: 205 ERGI 208
>Q9HJD3:RADB_THEAC DNA repair and recombination protein radB - Thermoplasma| acidophilum Length = 229 Score = 47.4 bits (111), Expect = 1e-04 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 1/206 (0%) Frame = +2 Query: 140 DMLSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDY 319 D +S +Q + I TG G ++ +L GG+ +TEI G G GKT + + + + Sbjct: 2 DEISLQQGVRRIQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAM----- 56 Query: 320 GGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIY 499 G K +YID+EG ER + C SDI + Sbjct: 57 -SQGLKVIYIDSEG-LSPERFLAV---CRSDISMF------------------------K 87 Query: 500 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFR-QDFEDLALRTRVXXXXXXX 676 FR+ S +Q I K + + ++++DS + FR + +D R Sbjct: 88 LFRVYSLDDQEVAIMKASKMADRDQKIGMIVLDSFSEFFRLEKSDDRQARIAEFQRQLSL 147 Query: 677 XXXXXXAYNLAVVLLNQVTTKFTEGS 754 N+ V++ NQ+ G+ Sbjct: 148 LSSVAAKKNIPVLITNQIYQDIDNGT 173
>Q68WI9:RADA_RICTY DNA repair protein radA homolog - Rickettsia typhi| Length = 445 Score = 43.5 bits (101), Expect = 0.002 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Frame = +2 Query: 98 TAQKLLLQGAQNAWDMLSEEQSQK-HITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 + K ++ G++ +D LS + S+ I+T LN +LGGG+ IGG PG+GK+ Sbjct: 39 STNKSIITGSKQTFDKLSCDVSEPLRISTPISELNRVLGGGLVLGSAILIGGEPGIGKST 98 Query: 275 LGIQL 289 L +QL Sbjct: 99 LLLQL 103
>Q4UL56:RADA_RICFE DNA repair protein radA homolog - Rickettsia felis (Rickettsia| azadi) Length = 446 Score = 43.5 bits (101), Expect = 0.002 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +2 Query: 98 TAQKLLLQGAQNAWDMLSEEQSQK-HITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 T + ++ G++ +D LS +++ I T G LN +LGGG+ IGG PG+GK+ Sbjct: 40 TNKAIVKTGSKQDFDKLSGHVAEQLRIPTPIGELNRVLGGGLVLGSAILIGGDPGIGKST 99 Query: 275 LGIQLA 292 L +QLA Sbjct: 100 LLLQLA 105
>Q9KGG1:RADA_BACHD DNA repair protein radA homolog - Bacillus halodurans| Length = 457 Score = 43.1 bits (100), Expect = 0.002 Identities = 27/87 (31%), Positives = 42/87 (48%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E + + I T LN +LGGGI + +GG PG+GK+ L +QL+ + L Sbjct: 65 EREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARL------ADLK 118 Query: 332 GKAVYIDTEGSFMVERVYQIAEGCISD 412 + +YI E S ++ G +SD Sbjct: 119 QRVLYISGEESVKQTKIRSDRLGVLSD 145
>P38953:RAD55_YEAST DNA repair protein RAD55 - Saccharomyces cerevisiae (Baker's yeast)| Length = 406 Score = 43.1 bits (100), Expect = 0.002 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 +S K +++G L++IL G + + EI G PG+GKT GIQL N Sbjct: 13 ESPKPLSSGITGLDEILNLGFQARSIYEIFGPPGIGKTNFGIQLVCN 59
>Q9LQQ2:RA51D_ARATH DNA repair protein RAD51 homolog 4 - Arabidopsis thaliana| (Mouse-ear cress) Length = 322 Score = 43.1 bits (100), Expect = 0.002 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 1/160 (0%) Frame = +2 Query: 131 NAWDMLSEEQSQKH-ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 N +L + KH ++TG + +L GG ++TE+ G GKTQ +Q A +V Sbjct: 74 NGLKLLEDLHRNKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVA- 132 Query: 308 PVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL 487 G+ +Y+DT SF R+ Q F C A+ GQ+ + Sbjct: 133 ----ENHLGRVLYLDTGNSFSARRIAQ------------FICSSSDATLGQKVMSRILCH 176 Query: 488 AGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 + + + + + L+ + E + +R++++DS++ Sbjct: 177 TVYDIYTLFDTLQDLEITLRLQMNVNESR-LRLLVVDSIS 215
>Q92HG1:RADA_RICCN DNA repair protein radA homolog - Rickettsia conorii| Length = 444 Score = 42.7 bits (99), Expect = 0.003 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +2 Query: 98 TAQKLLLQGAQNAWDMLSEEQSQK-HITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQ 274 T Q ++ G++ +D LS +++ I T G N +LGGG+ IGG PG+GK+ Sbjct: 38 TNQVIVKVGSKQDFDKLSGHVTEQLRIPTPIGEFNRVLGGGLVLGSAILIGGDPGIGKST 97 Query: 275 LGIQLA 292 L +QLA Sbjct: 98 LLLQLA 103
>O43543:XRCC2_HUMAN DNA-repair protein XRCC2 - Homo sapiens (Human)| Length = 280 Score = 42.0 bits (97), Expect = 0.005 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 1/127 (0%) Frame = +2 Query: 230 EVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCIS 409 ++ E G G GKT++ L +P GGL + ++IDT+ F + R+ I E Sbjct: 42 DILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE---- 97 Query: 410 DIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINY-LEKFLGEHKDVRI 586 H + S +E ++ + G ++ CS + + + Y LE H + + Sbjct: 98 ---------HRLSQSSEEIIK---YCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCL 145 Query: 587 VIIDSVT 607 +I+DS++ Sbjct: 146 LILDSLS 152
>Q9ZD04:RADA_RICPR DNA repair protein radA homolog - Rickettsia prowazekii| Length = 445 Score = 42.0 bits (97), Expect = 0.005 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = +2 Query: 107 KLLLQGAQNAWDMLSEEQSQK-HITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGI 283 K +++G++ +D LS S++ I T LN +LGGG+ IGG PG+GK+ L + Sbjct: 42 KSIIKGSKQTFDKLSCNVSEQLRIPTPICELNRVLGGGLVLGSAILIGGEPGIGKSTLLL 101 Query: 284 QL 289 QL Sbjct: 102 QL 103
>Q9PK96:RADA_CHLMU DNA repair protein radA homolog - Chlamydia muridarum| Length = 455 Score = 41.6 bits (96), Expect = 0.006 Identities = 25/69 (36%), Positives = 36/69 (52%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGK 337 Q + I+T S N +LGGG C +T +GG PG+GK+ L +QI + G K Sbjct: 65 QEEIRISTRSKGWNRLLGGGTVCGSLTLLGGEPGIGKSTL------LLQISSQFAEQGYK 118 Query: 338 AVYIDTEGS 364 +Y+ E S Sbjct: 119 VLYVCGEES 127
>O66827:RADA_AQUAE DNA repair protein radA homolog - Aquifex aeolicus| Length = 444 Score = 41.2 bits (95), Expect = 0.008 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E++ + TTG SL++ LGGG+ +V I G PG+GK+ L +Q++ D G Sbjct: 59 EKEEHERETTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQIS-------DRVANG 111 Query: 332 GKAVYIDTEGS 364 K +Y+ E S Sbjct: 112 KKVLYVSGEES 122
>Q1RJR7:RADA_RICBR DNA repair protein radA homolog - Rickettsia bellii (strain| RML369-C) Length = 448 Score = 40.0 bits (92), Expect = 0.017 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +2 Query: 92 NKTAQKLLLQGAQNAWDMLSEEQS-QKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGK 268 NK K+ G++ ++ LS + Q I+T G L+ +LGGG+ IGG PG+GK Sbjct: 41 NKNIAKI---GSKQDFEQLSSNVTDQVRISTPIGELDRVLGGGLVLGSAILIGGDPGIGK 97 Query: 269 TQLGIQL 289 + L +QL Sbjct: 98 STLLLQL 104
>P96963:RADA_PSEAE DNA repair protein radA homolog - Pseudomonas aeruginosa| Length = 453 Score = 40.0 bits (92), Expect = 0.017 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINV--QIPVDY 319 + TTGS L+ +LGGG+ V IGG PG+GK+ + +Q N+ ++P Y Sbjct: 66 EEMPRFTTGSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALY 121
>P65953:RADA_MYCTU DNA repair protein radA homolog - Mycobacterium tuberculosis| Length = 480 Score = 40.0 bits (92), Expect = 0.017 Identities = 27/83 (32%), Positives = 43/83 (51%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTE 358 TG L+ +LGGGI VT + G PGVGK+ L +++A + G +A+Y+ E Sbjct: 72 TGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHR------WAQSGRRALYVSGE 125 Query: 359 GSFMVERVYQIAEGCISDIMEYF 427 S R+ GC +++ E + Sbjct: 126 ESAGQIRLRADRIGCGTEVEEIY 148
>P65954:RADA_MYCBO DNA repair protein radA homolog - Mycobacterium bovis| Length = 480 Score = 40.0 bits (92), Expect = 0.017 Identities = 27/83 (32%), Positives = 43/83 (51%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTE 358 TG L+ +LGGGI VT + G PGVGK+ L +++A + G +A+Y+ E Sbjct: 72 TGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHR------WAQSGRRALYVSGE 125 Query: 359 GSFMVERVYQIAEGCISDIMEYF 427 S R+ GC +++ E + Sbjct: 126 ESAGQIRLRADRIGCGTEVEEIY 148
>P74391:RADA_SYNY3 DNA repair protein radA homolog - Synechocystis sp. (strain PCC| 6803) Length = 505 Score = 39.7 bits (91), Expect = 0.022 Identities = 19/49 (38%), Positives = 31/49 (63%) Frame = +2 Query: 155 EQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINV 301 +++Q +G G L+ +LGGGI + IGG PG+GK+ L +Q+A + Sbjct: 76 QENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQVAFQL 124
>Q48761:RADA_LISMO DNA repair protein radA homolog - Listeria monocytogenes| Length = 457 Score = 39.7 bits (91), Expect = 0.022 Identities = 21/69 (30%), Positives = 37/69 (53%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGK 337 +++K + T LN +LGGG+ + +GG PG+GK+ L +Q++ + + K Sbjct: 67 ETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTL------TNKK 120 Query: 338 AVYIDTEGS 364 +YI E S Sbjct: 121 VLYISGEES 129
>P37572:RADA_BACSU DNA repair protein radA homolog - Bacillus subtilis| Length = 458 Score = 38.9 bits (89), Expect = 0.038 Identities = 22/71 (30%), Positives = 34/71 (47%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E + + T G N +LGGG+ + IGG PG+GK+ L +Q++ + G Sbjct: 66 ETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQL------SGSS 119 Query: 332 GKAVYIDTEGS 364 +YI E S Sbjct: 120 NSVLYISGEES 130
>O14129:RAD55_SCHPO DNA repair protein rhp55 - Schizosaccharomyces pombe (Fission| yeast) Length = 350 Score = 38.1 bits (87), Expect = 0.065 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +2 Query: 194 LNDILGG-GIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFM 370 L+D GG G+ ++E+ G PG+GKT L +Q+ N + G + ++++T Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLS------GSRVIWVETCQPIP 85 Query: 371 VERVYQIAE 397 +ER+ Q+ + Sbjct: 86 MERLRQLLD 94
>Q92F42:RADA_LISIN DNA repair protein radA homolog - Listeria innocua| Length = 457 Score = 37.7 bits (86), Expect = 0.085 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = +2 Query: 149 SEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 SEE+++ + T LN +LGGG+ + +GG PG+GK+ L +Q++ + + Sbjct: 66 SEEEAR--VETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTL------T 117 Query: 329 GGKAVYIDTEGS 364 K +YI E S Sbjct: 118 NKKVLYISGEES 129
>Q9CX47:XRCC2_MOUSE DNA-repair protein XRCC2 - Mus musculus (Mouse)| Length = 278 Score = 37.4 bits (85), Expect = 0.11 Identities = 29/126 (23%), Positives = 57/126 (45%) Frame = +2 Query: 230 EVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCIS 409 ++ E G G GKT++ L +P GGL + ++IDT+ F + R+ + E Sbjct: 42 DIFEFHGPEGTGKTEMLYHLTARCILPKSEGGLQIEVLFIDTDYHFDMLRLVTVLE---- 97 Query: 410 DIMEYFPCHHDKASSGQENLQPESFLAGIYYFRICSYTEQIAVINYLEKFLGEHKDVRIV 589 H + S +E + + LA ++ S + + ++ LE L + ++ Sbjct: 98 ---------HRLSQSSEEAM--KLCLARLFLAYCSSSMQLLLTLHSLEALLCSRPSLCLL 146 Query: 590 IIDSVT 607 I+DS++ Sbjct: 147 IVDSLS 152
>Q8G4G9:RECA_BIFLO Protein recA - Bifidobacterium longum| Length = 397 Score = 37.4 bits (85), Expect = 0.11 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 155 EQSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 EQ+ + I TGS +L+ LG GG+ + EI G GKT L + + N Q G Sbjct: 51 EQNVEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQ------KKG 104 Query: 332 GKAVYIDTE 358 G A YID E Sbjct: 105 GVAAYIDAE 113
>Q9PN90:RADA_CAMJE DNA repair protein radA homolog - Campylobacter jejuni| Length = 446 Score = 37.0 bits (84), Expect = 0.14 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +2 Query: 152 EEQSQKHIT---TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYG 322 E+ +H T T L+ +LGGG+ + IGG PGVGK+ L +++A N+ Sbjct: 61 EDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNL------A 114 Query: 323 GLGGKAVYIDTEGS 364 G K +Y+ E S Sbjct: 115 KQGKKVLYVSGEES 128
>Q9APB2:RECA_RALEU Protein recA - Ralstonia eutropha (Alcaligenes eutrophus)| Length = 353 Score = 36.6 bits (83), Expect = 0.19 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +2 Query: 155 EQSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 EQ + ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q LG Sbjct: 43 EQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ------KLG 96 Query: 332 GKAVYIDTEGSFMVE 376 G +ID E + V+ Sbjct: 97 GTCAFIDAEHALDVQ 111
>O83985:RADA_TREPA DNA repair protein radA homolog - Treponema pallidum| Length = 455 Score = 36.6 bits (83), Expect = 0.19 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 Q + I+ G + +LGGG + IGG PG+GK+ L +Q+A Sbjct: 67 QDAQRISCGIAEFDRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIA 111
>P33542:RECA_AQUPY Protein recA - Aquifex pyrophilus| Length = 348 Score = 36.2 bits (82), Expect = 0.25 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS SL+ G GGI +TEI GV GKT L + + Q GG AV+I Sbjct: 45 IPTGSISLDIATGVGGIPKGRITEIFGVESSGKTTLALHVIAEAQ------KRGGVAVFI 98 Query: 350 DTE 358 D E Sbjct: 99 DAE 101
>Q682D3:XRCC2_ARATH DNA-repair protein XRCC2 homolog - Arabidopsis thaliana (Mouse-ear| cress) Length = 372 Score = 35.8 bits (81), Expect = 0.32 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 233 VTEIGGVPGVGKTQLGIQLAINVQIP-----VDYGGLGGKAVYIDTEGSFMVERVYQI 391 V EI G KTQ+ IQ AI+ +P + YGGLG +++D + F V R+ Q+ Sbjct: 45 VVEITGASTSAKTQILIQAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQM 102
>Q66X92:RECA_BURPS Protein recA - Burkholderia pseudomallei (Pseudomonas pseudomallei)| Length = 356 Score = 35.8 bits (81), Expect = 0.32 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q LGG A +I Sbjct: 49 VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQ------KLGGTAAFI 102 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 103 DAEHALDVQ 111
>Q62MH0:RECA_BURMA Protein recA - Burkholderia mallei (Pseudomonas mallei)| Length = 356 Score = 35.8 bits (81), Expect = 0.32 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q LGG A +I Sbjct: 49 VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQ------KLGGTAAFI 102 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 103 DAEHALDVQ 111
>P19690:RECA_BURCE Protein recA - Burkholderia cepacia (Pseudomonas cepacia)| Length = 347 Score = 35.8 bits (81), Expect = 0.32 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q LGG A +I Sbjct: 40 VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ------KLGGTAAFI 93 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 94 DAEHALDVQ 102
>Q5P3R8:RECA_AZOSE Protein recA - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum| (strain EbN1)) Length = 346 Score = 35.8 bits (81), Expect = 0.32 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +2 Query: 155 EQSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E+ + ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q LG Sbjct: 34 ERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQ------KLG 87 Query: 332 GKAVYIDTE 358 G A +ID E Sbjct: 88 GTAAFIDAE 96
>Q39199:RECAC_ARATH DNA repair protein recA homolog 1, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 439 Score = 35.8 bits (81), Expect = 0.32 Identities = 30/96 (31%), Positives = 41/96 (42%) Frame = +2 Query: 176 TTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYIDT 355 ++G +L+ LGGG+ V EI G GKT L + VQ LGG A+ +D Sbjct: 118 SSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQ------KLGGNAMLVDA 171 Query: 356 EGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQE 463 E +F + Y A G D+ C D E Sbjct: 172 EHAF--DPAYSKALGV--DVENLIVCQPDNGEMALE 203
>P48287:RECA_CHLTR Protein recA - Chlamydia trachomatis| Length = 352 Score = 35.4 bits (80), Expect = 0.42 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TG+ SL+ LG GG+ + EI G GKT L + N Q +GG A YI Sbjct: 41 IKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQ------KMGGVAAYI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>Q821E6:RECA_CHLCV Protein recA - Chlamydophila caviae| Length = 350 Score = 35.4 bits (80), Expect = 0.42 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TG+ SL+ LG GG+ + EI G GKT L + N Q +GG A YI Sbjct: 41 IKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQ------KMGGVAAYI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>Q5L4P3:RECA_CHLAB Protein recA - Chlamydophila abortus| Length = 349 Score = 35.4 bits (80), Expect = 0.42 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TG+ SL+ LG GG+ + EI G GKT L + N Q +GG A YI Sbjct: 41 IKTGALSLDLALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQ------KMGGVAAYI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>Q9S660:RECA_BIFBR Protein recA - Bifidobacterium breve| Length = 392 Score = 35.4 bits (80), Expect = 0.42 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGG 334 Q+ + I TGS +L+ LG GG+ + EI G GKT L + + N Q GG Sbjct: 52 QNVEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQ------KKGG 105 Query: 335 KAVYIDTE 358 A YID E Sbjct: 106 VAAYIDAE 113
>O67905:RECA_AQUAE Protein recA - Aquifex aeolicus| Length = 345 Score = 35.4 bits (80), Expect = 0.42 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 E+ + I TGS +L+ G GGI +TEI GV GKT L + + Q Sbjct: 35 EKVQVETIPTGSLALDIATGVGGIPKGRITEIFGVESSGKTTLALHVIAEAQ------KR 88 Query: 329 GGKAVYIDTE 358 GG AV+ID E Sbjct: 89 GGVAVFIDAE 98
>P42443:RECA_DEIRA Protein recA - Deinococcus radiodurans| Length = 363 Score = 35.0 bits (79), Expect = 0.55 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS SL+ LG GGI +TEI G GKT L + + Q GG +I Sbjct: 52 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ------KAGGTCAFI 105 Query: 350 DTEGSFMVERVYQIAEGCISD 412 D E + ++ VY A G +D Sbjct: 106 DAEHA--LDPVYARALGVNTD 124
>Q9PLS6:RECA_CHLMU Protein recA - Chlamydia muridarum| Length = 354 Score = 35.0 bits (79), Expect = 0.55 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TG+ SL+ LG GG+ + EI G GKT L + N Q +GG A YI Sbjct: 41 IKTGALSLDLALGIGGVPKGRIIEIFGPESSGKTTLATHIVANAQ------KMGGVAAYI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>O84300:RADA_CHLTR DNA repair protein radA homolog - Chlamydia trachomatis| Length = 454 Score = 35.0 bits (79), Expect = 0.55 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG 331 E Q + I T + N +LGGG + +GG PG+GK+ L +QI + G Sbjct: 62 EFQEEIRIHTQAQGWNRLLGGGTVRGSLALLGGEPGIGKSTL------LLQISSQFAAAG 115 Query: 332 GKAVYIDTEGS 364 K +Y+ E S Sbjct: 116 HKVLYVCGEES 126
>Q6AIZ3:RECA_DESPS Protein recA - Desulfotalea psychrophila| Length = 355 Score = 34.7 bits (78), Expect = 0.72 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TG+ SL+ LG GG+ +TEI G GKT L + + Q LGG A +I Sbjct: 43 ISTGALSLDIALGVGGLPKGRMTEIYGPESSGKTTLALHVVAEAQ------KLGGIAAFI 96 Query: 350 DTE 358 D E Sbjct: 97 DAE 99
>Q7NXL9:RECA_CHRVO Protein recA - Chromobacterium violaceum| Length = 350 Score = 34.7 bits (78), Expect = 0.72 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS +L+ LG GG+ V EI G GKT L +Q Q LGG YI Sbjct: 41 ISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQAVAEAQ------KLGGTCAYI 94 Query: 350 DTEGS 364 D E + Sbjct: 95 DAENA 99
>P74737:RECA_SYNY3 Protein recA - Synechocystis sp. (strain PCC 6803)| Length = 354 Score = 34.3 bits (77), Expect = 0.94 Identities = 30/97 (30%), Positives = 42/97 (43%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG+ + EI G GKT L + Q GG A ++D Sbjct: 43 ISTGALTLDLALGGGLPKGRIVEIYGPESSGKTTLALHAVAATQ------QAGGVAAFVD 96 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQE 463 E + ++ VY A G DI D S E Sbjct: 97 AEHA--LDPVYSKALGV--DIDNLLVAQPDNGESALE 129
>Q8Y1Y6:RECA_RALSO Protein recA - Ralstonia solanacearum (Pseudomonas solanacearum)| Length = 352 Score = 34.3 bits (77), Expect = 0.94 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +2 Query: 149 SEEQSQKHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGG 325 +E + + ++TGS L+ LG GG+ V EI G GKT L +Q+ +Q Sbjct: 40 AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ------K 93 Query: 326 LGGKAVYIDTE 358 LGG +ID E Sbjct: 94 LGGTCAFIDAE 104
>P62215:RECA_GEOSL Protein recA - Geobacter sulfurreducens| Length = 338 Score = 34.3 bits (77), Expect = 0.94 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS SL+ LG GG+ + EI G GKT L + +A Q +GG A ++ Sbjct: 40 IPTGSLSLDLALGVGGVPRGRIIEIYGPESSGKTTLALHIAAEAQ------KMGGIAAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q97B99:RADB_THEVO DNA repair and recombination protein radB - Thermoplasma volcanium| Length = 234 Score = 34.3 bits (77), Expect = 0.94 Identities = 36/158 (22%), Positives = 61/158 (38%) Frame = +2 Query: 146 LSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGG 325 +S ++ + + G ++ + GG+ +TEI G G GK+ + + A + Sbjct: 5 ISLQEKIEKLPLGVACIDGLTNGGLEAGIITEIFGEGGSGKSNVCMLAACSAL------R 58 Query: 326 LGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLAGIYYF 505 LG K V+ID+EG F ER I C D + + Sbjct: 59 LGKKVVFIDSEG-FSSERFLSI-------------CKADNSK--------------LKVI 90 Query: 506 RICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFR 619 R+ S +Q I K + + + I+DS + FR Sbjct: 91 RVFSLDDQEVAITKFSKIIEKDASYGLFILDSFSEFFR 128
>P56148:RADA_HELPY DNA repair protein radA homolog - Helicobacter pylori| (Campylobacter pylori) Length = 448 Score = 34.3 bits (77), Expect = 0.94 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 13/198 (6%) Frame = +2 Query: 53 EAYAALRGCDMAPNKTAQKLLLQGAQNAWDMLSEEQSQKHITTGSGSLNDILGGGIHCKE 232 E++ L T +K + Q ++ E + ++ L+ +LGGGI Sbjct: 31 ESFIELNQAQKEVLNTLKKPIPQAQKSVSIAAIEHEEVIKFSSTQSELDIVLGGGIAKGG 90 Query: 233 VTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLG---GKAVYIDTEGSFMVERVYQIAEGC 403 + +GG PGVGK+ L +++A GL K +Y+ E S ++ I C Sbjct: 91 LYLVGGSPGVGKSTLLLKVA---------SGLAKNQQKVLYVSGEESLSQIKMRAIRLDC 141 Query: 404 ISDIMEYFPCHHDKASSGQENLQPESFLA-------GIYYFRICS---YTEQIAVINYLE 553 I E + + + N++ E++ A +Y I S Q+ I + Sbjct: 142 IE--KELYLLNEINWPVIKANIESENYFACVIDSIQTLYSPEISSAPGSISQVREITFEL 199 Query: 554 KFLGEHKDVRIVIIDSVT 607 L + +D+ I II +T Sbjct: 200 MRLAKTRDIAIFIIGHIT 217
>P94190:RECA_AERS4 Protein recA - Aeromonas salmonicida (strain A449)| Length = 353 Score = 33.9 bits (76), Expect = 1.2 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQ 304 I+TGS SL+ LG GG+ C + EI G GKT L +Q+ Q Sbjct: 39 ISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQ 83
>Q9V216:Y258_PYRAB UPF0273 protein PYRAB02580 - Pyrococcus abyssi| Length = 247 Score = 33.5 bits (75), Expect = 1.6 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 + I TG ++DIL GGI + V + G PG GKT Q N Sbjct: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46
>Q67NU3:RECA_SYMTH Protein recA - Symbiobacterium thermophilum| Length = 350 Score = 33.5 bits (75), Expect = 1.6 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Frame = +2 Query: 146 LSEEQSQKH---ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPV 313 L E+ S+ + I TGS +L+ LG GG+ +TEI G GKT + + + Q Sbjct: 30 LGEQMSRLNVEVIPTGSVALDVALGVGGLPRGRITEIYGPESSGKTTVALHVIAEAQ--- 86 Query: 314 DYGGLGGKAVYIDTEGSFMVERVYQIAEG 400 +GG A ++D E + ++ VY A G Sbjct: 87 ---KMGGVAAFVDAEHA--LDPVYAQALG 110
>Q82TF6:RECA_NITEU Protein recA - Nitrosomonas europaea| Length = 343 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ + EI G GKT L +Q +Q LGG A +I Sbjct: 40 VSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQAIAEMQ------KLGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q05358:RECA_LEGPN Protein recA - Legionella pneumophila| Length = 348 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS L+ LG GG+ + EI G GKT L +Q+ Q +GG A +I Sbjct: 40 ISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ------KMGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q5WVQ0:RECA_LEGPL Protein recA - Legionella pneumophila (strain Lens)| Length = 348 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS L+ LG GG+ + EI G GKT L +Q+ Q +GG A +I Sbjct: 40 ISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ------KMGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q5ZUJ7:RECA_LEGPH Protein recA - Legionella pneumophila subsp. pneumophila (strain| Philadelphia 1 / ATCC 33152 / DSM 7513) Length = 348 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS L+ LG GG+ + EI G GKT L +Q+ Q +GG A +I Sbjct: 40 ISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ------KMGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q5X4B5:RECA_LEGPA Protein recA - Legionella pneumophila (strain Paris)| Length = 348 Score = 33.5 bits (75), Expect = 1.6 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS L+ LG GG+ + EI G GKT L +Q+ Q +GG A +I Sbjct: 40 ISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ------KMGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>O52393:RECA_CHLTE Protein recA - Chlorobium tepidum| Length = 346 Score = 33.5 bits (75), Expect = 1.6 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Frame = +2 Query: 92 NKTAQKLLLQGAQNAWDMLSEEQSQKH---ITTGSGSLNDILG-GGIHCKEVTEIGGVPG 259 N + L Q + A L ++ + H I+TGS +L+ LG GG+ VTEI G Sbjct: 23 NLAIETLEKQFGKGAIMRLGDDSAVMHVQVISTGSMALDYALGVGGLPRGRVTEIYGPES 82 Query: 260 VGKTQLGIQLAINVQIPVDYGGLGGKAVYIDTEGSF 367 GKT L + Q GG A +D E +F Sbjct: 83 SGKTTLALHAIAEAQ------KNGGIAALVDAEHAF 112
>Q9Z9C8:RADA_CHLPN DNA repair protein radA homolog - Chlamydia pneumoniae| (Chlamydophila pneumoniae) Length = 453 Score = 33.5 bits (75), Expect = 1.6 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +2 Query: 152 EEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 E +++ I + ILGGG+ +T +GG PG+GK+ L +Q A Sbjct: 61 ELENESRIFIDHAGWDRILGGGVVRGSLTLLGGDPGIGKSTLLLQTA 107
>Q8YT40:KAIC_ANASP Circadian clock protein kinase kaiC - Anabaena sp. (strain PCC| 7120) Length = 519 Score = 33.5 bits (75), Expect = 1.6 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +2 Query: 143 MLSEEQSQKHITTGSG---------SLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAI 295 M +EQ ++ T+G+G +DI GG+ T + G G GKT L +Q Sbjct: 1 MSEKEQQEQQNTSGNGVEKIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLLSLQFLF 60 Query: 296 N 298 N Sbjct: 61 N 61
>Q9WYK4:Y370_THEMA UPF0273 protein TM_0370 - Thermotoga maritima| Length = 242 Score = 33.1 bits (74), Expect = 2.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 K + TG +++IL GGI + + I G PG GKT Q N Sbjct: 3 KRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWN 46
>Q7U4K5:RECA_SYNPX Protein recA - Synechococcus sp. (strain WH8102)| Length = 375 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/62 (37%), Positives = 30/62 (48%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG V EI G GKT L + VQ GG A ++D Sbjct: 54 ISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLHAIAEVQ------KRGGVAAFVD 107 Query: 353 TE 358 E Sbjct: 108 AE 109
>Q5N2W5:RECA_SYNP6 Protein recA - Synechococcus sp. (strain ATCC 27144 / PCC 6301 /| SAUG 1402/1) (Anacystis nidulans) Length = 356 Score = 33.1 bits (74), Expect = 2.1 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG+ + E+ G GKT L + VQ GG A ++D Sbjct: 46 ISTGALTLDLALGGGLPKGRIIEVYGPESSGKTTLTLHAIAEVQ------KQGGIAAFVD 99 Query: 353 TEGSFMVERVYQIAEG 400 E + ++ VY + G Sbjct: 100 AEHA--LDPVYATSVG 113
>Q8DH70:RECA_SYNEL Protein recA - Synechococcus elongatus (Thermosynechococcus| elongatus) Length = 355 Score = 33.1 bits (74), Expect = 2.1 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I++G+ +L+ LGGG+ + EI G GKT L + VQ GG A ++D Sbjct: 47 ISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLALHAIAEVQ------KAGGVAAFVD 100 Query: 353 TE 358 E Sbjct: 101 AE 102
>P48295:RECA_STRVL Protein recA - Streptomyces violaceus (Streptomyces venezuelae)| Length = 377 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS +L+ LG GG+ V EI G GKT L + N Q GG+ ++ Sbjct: 40 ISTGSTALDIALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQ------KAGGQVAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q59560:RECA_MYCS2 Protein recA - Mycobacterium smegmatis (strain ATCC 700084 /| mc(2)155) Length = 349 Score = 33.1 bits (74), Expect = 2.1 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS SL+ LG GG+ V EI G GKT + + N Q GG A +I Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGIAAFI 95 Query: 350 DTE 358 D E Sbjct: 96 DAE 98
>P35901:RECA_MYCLE Protein recA - Mycobacterium leprae| Length = 711 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ + EI G GKT + + N Q +GG A +I Sbjct: 41 IPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTVALHAVANAQ------AVGGVAAFI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>Q83CQ4:RECA_COXBU Protein recA - Coxiella burnetii| Length = 343 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS L+ LG GG+ + EI G GKT L +Q + Q +GG A ++ Sbjct: 39 ISTGSLGLDIALGVGGLPRGRIIEIYGPEASGKTTLALQTIASCQ------RMGGTAAFV 92 Query: 350 DTE 358 D E Sbjct: 93 DAE 95
>Q9A9A7:RECA_CAUCR Protein recA - Caulobacter crescentus (Caulobacter vibrioides)| Length = 356 Score = 33.1 bits (74), Expect = 2.1 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ + E+ G GKT L + + VQ GG A ++ Sbjct: 51 VSTGSLGLDIALGIGGLPKGRIVEVYGPESSGKTTLALHVVAEVQ------KAGGTAAFV 104 Query: 350 DTEGSFMVERVYQI 391 D E + Y++ Sbjct: 105 DAEHALDPSYAYKL 118
>P0A448:RECA_BORPE Protein recA - Bordetella pertussis| Length = 353 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V E+ G GKT L +Q+ +Q LGG ++ Sbjct: 48 VSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQ------KLGGTCAFV 101 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 102 DAEHALDVQ 110
>P0A450:RECA_BORPA Protein recA - Bordetella parapertussis| Length = 353 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V E+ G GKT L +Q+ +Q LGG ++ Sbjct: 48 VSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQ------KLGGTCAFV 101 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 102 DAEHALDVQ 110
>P0A449:RECA_BORBR Protein recA - Bordetella bronchiseptica (Alcaligenes| bronchisepticus) Length = 353 Score = 33.1 bits (74), Expect = 2.1 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V E+ G GKT L +Q+ +Q LGG ++ Sbjct: 48 VSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQ------KLGGTCAFV 101 Query: 350 DTEGSFMVE 376 D E + V+ Sbjct: 102 DAEHALDVQ 110
>P14167:RECA_ANAVT Protein recA - Anabaena variabilis (strain ATCC 29413 / PCC 7937)| Length = 358 Score = 33.1 bits (74), Expect = 2.1 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG+ V EI G GKT + + VQ GG A ++D Sbjct: 44 ISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVALHAIAEVQKE------GGIAAFVD 97 Query: 353 TE 358 E Sbjct: 98 AE 99
>P58552:RECA_ANASP Protein recA - Anabaena sp. (strain PCC 7120)| Length = 357 Score = 33.1 bits (74), Expect = 2.1 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG+ V EI G GKT + + VQ GG A ++D Sbjct: 44 ISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVALHAIAEVQKE------GGIAAFVD 97 Query: 353 TE 358 E Sbjct: 98 AE 99
>P45266:RADA_HAEIN DNA repair protein radA homolog - Haemophilus influenzae| Length = 458 Score = 33.1 bits (74), Expect = 2.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 158 QSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQL 289 Q ++G L+ +LGGGI IGG PG GK+ L +Q+ Sbjct: 70 QETPRFSSGFSELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQV 113
>Q97X93:Y1861_SULSO UPF0273 protein SSO1861 - Sulfolobus solfataricus| Length = 280 Score = 32.7 bits (73), Expect = 2.7 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 K + T L++IL GGI + + + G PG GK+ LG Q N Sbjct: 2 KRVKTYIPGLDEILYGGIPERHIVLVSGGPGTGKSILGKQFLYN 45
>O30633:RECA_XANOR Protein recA - Xanthomonas oryzae pv. oryzae| Length = 344 Score = 32.7 bits (73), Expect = 2.7 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS L+ LG GG+ V EI G GKT L +Q Q LGG A +I Sbjct: 39 IPTGSLMLDIALGTGGLPKGRVVEIYGPESSGKTTLTLQAIAQCQ------KLGGTAAFI 92 Query: 350 DTE 358 D E Sbjct: 93 DAE 95
>Q60101:RECA_XANCP Protein recA - Xanthomonas campestris pv. campestris| Length = 343 Score = 32.7 bits (73), Expect = 2.7 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS L+ LG GG+ V EI G GKT L +Q Q LGG A +I Sbjct: 39 IPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQ------KLGGTAAFI 92 Query: 350 DTE 358 D E Sbjct: 93 DAE 95
>Q4UTR4:RECA_XANC8 Protein recA - Xanthomonas campestris pv. campestris (strain 8004)| Length = 343 Score = 32.7 bits (73), Expect = 2.7 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS L+ LG GG+ V EI G GKT L +Q Q LGG A +I Sbjct: 39 IPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQ------KLGGTAAFI 92 Query: 350 DTE 358 D E Sbjct: 93 DAE 95
>Q9PR61:RECA_UREPA Protein recA - Ureaplasma parvum (Ureaplasma urealyticum biotype 1)| Length = 334 Score = 32.7 bits (73), Expect = 2.7 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Frame = +2 Query: 194 LNDILGGGIHCKEVTEIGGVPGVGK------TQLGIQLAINVQIPVDYGGLGGKAVYIDT 355 +N I G IH ++T I G+P VGK + + I +Q + GG V +D Sbjct: 36 INAISTGSIHIDQITGINGIP-VGKITEIYGNESSGKTTIALQTIAECQKTGGTVVLLDL 94 Query: 356 EGSF 367 EGSF Sbjct: 95 EGSF 98
>P14582:RECA_SYNP2 Protein recA - Synechococcus sp. (strain PCC 7002) (Agmenellum| quadruplicatum) Length = 348 Score = 32.7 bits (73), Expect = 2.7 Identities = 28/97 (28%), Positives = 40/97 (41%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I +G+ +L+ +GGG + EI G GKT + + VQ GG A +ID Sbjct: 44 IPSGALTLDQAMGGGFPRGRIVEIYGPESSGKTTVALHAIAEVQ------KAGGVAAFID 97 Query: 353 TEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQE 463 E + ++ Y A G DI D S E Sbjct: 98 AEHA--LDPTYSAALGV--DIENLLVAQPDNGESALE 130
>P48294:RECA_STRLI Protein recA - Streptomyces lividans| Length = 374 Score = 32.7 bits (73), Expect = 2.7 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GGI V E+ G GKT L + N Q GG+ ++ Sbjct: 40 IPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQ------KAGGQVAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>O50487:RECA_STRCO Protein recA - Streptomyces coelicolor| Length = 374 Score = 32.7 bits (73), Expect = 2.7 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GGI V E+ G GKT L + N Q GG+ ++ Sbjct: 40 IPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQ------KAGGQVAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>P48293:RECA_SPIPL Protein recA - Spirulina platensis| Length = 365 Score = 32.7 bits (73), Expect = 2.7 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I++G+ +L+ LGGG+ V EI G GKT L + +Q GG A ++D Sbjct: 44 ISSGALTLDLALGGGLPRGRVIEIYGPESSGKTTLALHAIAEIQ------KTGGIAAFVD 97 Query: 353 TE 358 E Sbjct: 98 AE 99
>Q7V9V8:RECA_PROMA Protein recA - Prochlorococcus marinus| Length = 379 Score = 32.7 bits (73), Expect = 2.7 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG V E+ G GKT L + VQ GG A ++D Sbjct: 59 ISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQ------KRGGVAAFVD 112 Query: 353 TE 358 E Sbjct: 113 AE 114
>Q5YT00:RECA_NOCFA Protein recA - Nocardia farcinica| Length = 347 Score = 32.7 bits (73), Expect = 2.7 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = +2 Query: 146 LSEEQSQ--KHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVD 316 L EE Q I TGS +L+ LG GG+ + EI G GKT + + N Q Sbjct: 31 LGEEARQPISVIPTGSIALDVALGIGGLPRGRIVEIYGPESSGKTTVALHAVANAQ---- 86 Query: 317 YGGLGGKAVYIDTE 358 GG A +ID E Sbjct: 87 --AAGGVAAFIDAE 98
>P62219:RECA_MYCPA Protein recA - Mycobacterium paratuberculosis| Length = 350 Score = 32.7 bits (73), Expect = 2.7 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ V EI G GKT + + N Q GG A +I Sbjct: 41 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ------AAGGVAAFI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>P18076:RECA_METFL Protein recA - Methylobacillus flagellatum| Length = 344 Score = 32.7 bits (73), Expect = 2.7 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ + EI G GKT L + + +Q LGG A +I Sbjct: 40 VSTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVIAQMQ------KLGGTAAFI 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q8P2Q5:RADA_STRP8 DNA repair protein radA homolog - Streptococcus pyogenes serotype| M18 Length = 453 Score = 32.7 bits (73), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 T N +LGGG+ + IGG PG+GK+ L +Q++ Sbjct: 72 TDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVS 109
>Q5XDZ7:RADA_STRP6 DNA repair protein radA homolog - Streptococcus pyogenes serotype| M6 Length = 453 Score = 32.7 bits (73), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 T N +LGGG+ + IGG PG+GK+ L +Q++ Sbjct: 72 TDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVS 109
>Q8K8Q1:RADA_STRP3 DNA repair protein radA homolog - Streptococcus pyogenes serotype| M3 Length = 453 Score = 32.7 bits (73), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 T N +LGGG+ + IGG PG+GK+ L +Q++ Sbjct: 72 TDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVS 109
>Q9A1K1:RADA_STRP1 DNA repair protein radA homolog - Streptococcus pyogenes serotype| M1 Length = 453 Score = 32.7 bits (73), Expect = 2.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +2 Query: 179 TGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLA 292 T N +LGGG+ + IGG PG+GK+ L +Q++ Sbjct: 72 TDMSEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVS 109
>P0A5U4:RECA_MYCTU Protein recA - Mycobacterium tuberculosis| Length = 790 Score = 32.3 bits (72), Expect = 3.6 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ V EI G GKT + + N Q GG A +I Sbjct: 41 IPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGVAAFI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>P0A5U5:RECA_MYCBO Protein recA - Mycobacterium bovis| Length = 790 Score = 32.3 bits (72), Expect = 3.6 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ V EI G GKT + + N Q GG A +I Sbjct: 41 IPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGVAAFI 94 Query: 350 DTE 358 D E Sbjct: 95 DAE 97
>P62214:RECA_DESVH Protein recA - Desulfovibrio vulgaris (strain Hildenborough / ATCC| 29579 / NCIMB 8303) Length = 357 Score = 32.3 bits (72), Expect = 3.6 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS L+ LG GG+ VTEI G GKT L + + Q GG A +I Sbjct: 47 IPTGSIGLDLALGVGGVPRGRVTEIYGPESSGKTTLTLHIIAEAQ------KRGGTAAFI 100 Query: 350 DTE 358 D E Sbjct: 101 DAE 103
>Q9ZMK9:RADA_HELPJ DNA repair protein radA homolog - Helicobacter pylori J99| (Campylobacter pylori J99) Length = 448 Score = 32.3 bits (72), Expect = 3.6 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 13/167 (7%) Frame = +2 Query: 146 LSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGG 325 + E+ K +T S L+ +LGGGI + +GG PGVGK+ L +++A G Sbjct: 63 IEHEEVIKFSSTQS-ELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVA---------SG 112 Query: 326 LG---GKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFLA-- 490 L K +Y+ E S ++ CI + E + + + N++ E++ A Sbjct: 113 LAKNQQKVLYVSGEESLSQIKMRATRLDCIEE--ELYLLNEINWPVIKANMESENYFACV 170 Query: 491 -----GIYYFRICS---YTEQIAVINYLEKFLGEHKDVRIVIIDSVT 607 +Y I S Q+ I + L + +D+ I II +T Sbjct: 171 IDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHIT 217
>P13485:TAGF_BACSU CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase -| Bacillus subtilis Length = 746 Score = 32.0 bits (71), Expect = 4.7 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +2 Query: 299 VQIPVDYGGLGGKAVYIDTEGSFMVERVYQIAE-GCISDIMEYFPCHHDKASSGQENLQP 475 ++I + + G A Y+ +E + ++ + I + G + I E FP ++ + G EN++ Sbjct: 177 IEISSEEISITGYAGYLSSENQYRIKNLNLILKKGGETPIEEKFPIKLERKTHGLENMRA 236 Query: 476 ESFLAGIYYFRI 511 + F+ +Y F + Sbjct: 237 DGFVPELYDFEV 248
>Q82KB1:RECA_STRAW Protein recA - Streptomyces avermitilis| Length = 377 Score = 32.0 bits (71), Expect = 4.7 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ V E+ G GKT L + N Q GG+ ++ Sbjct: 40 IPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQ------KAGGQVAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q9ZFF6:RECA_SHISO Protein recA - Shigella sonnei| Length = 353 Score = 32.0 bits (71), Expect = 4.7 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = +2 Query: 146 LSEEQSQ--KHITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVD 316 L E++S + I+TGS SL+ LG GG+ + EI G GKT L +Q+ Q+ Sbjct: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQLE-- 87 Query: 317 YGGLGGKAVYIDTE 358 G +ID E Sbjct: 88 ----GKTCAFIDAE 97
>Q7UZU3:RECA_PROMP Protein recA - Prochlorococcus marinus subsp. pastoris (strain CCMP| 1378 / MED4) Length = 370 Score = 32.0 bits (71), Expect = 4.7 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 I+TG+ +L+ LGGG V E+ G GKT L + VQ GG A ++D Sbjct: 53 ISTGALTLDLALGGGYPKGRVVEVYGPESSGKTTLTLHAIAEVQ------KNGGIAAFVD 106 Query: 353 TE 358 E Sbjct: 107 AE 108
>Q9F672:RECA_HERSE Protein recA - Herbaspirillum seropedicae| Length = 351 Score = 32.0 bits (71), Expect = 4.7 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TGS L+ LG GG+ V EI G GKT L +Q +Q LGG +I Sbjct: 47 VSTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTLQSIAEMQ------KLGGTCAFI 100 Query: 350 DTE 358 D E Sbjct: 101 DAE 103
>Q7VIH2:RECA_HELHP Protein recA - Helicobacter hepaticus| Length = 345 Score = 32.0 bits (71), Expect = 4.7 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 146 LSEEQSQK--HITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVD 316 L ++Q +K I+TGS L+ LG GG+ + EI G GKT L +Q+ Q Sbjct: 29 LGDKQVEKIDSISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQIVAECQ---- 84 Query: 317 YGGLGGKAVYIDTE 358 GG +ID E Sbjct: 85 --RNGGICAFIDAE 96
>Q7NFV8:RECA_GLOVI Protein recA - Gloeobacter violaceus| Length = 369 Score = 32.0 bits (71), Expect = 4.7 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYID 352 + +G+ +L+ LGGG+ V EI G GKT L + +Q GG A ++D Sbjct: 57 VPSGAITLDLALGGGLPRGRVIEIYGPESSGKTTLALHAIAEIQ------KTGGVAAFVD 110 Query: 353 TE 358 E Sbjct: 111 AE 112
>P94666:RECA_CLOPE Protein recA - Clostridium perfringens| Length = 352 Score = 32.0 bits (71), Expect = 4.7 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 ++TG L+ LG GG+ + EI G GKT + + + Q LGG A YI Sbjct: 42 VSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALHVVAEAQ------KLGGAAAYI 95 Query: 350 DTE 358 D E Sbjct: 96 DAE 98
>O83097:DNAB_TREPA Replicative DNA helicase - Treponema pallidum| Length = 438 Score = 32.0 bits (71), Expect = 4.7 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQI 307 I TG +L D L GG E+ IG P +GKT L + +A N+ I Sbjct: 192 IATGLTAL-DNLTGGFQNSELIVIGARPSMGKTALAMTMASNIAI 235
>O74851:ADG3_SCHPO Protein adg3 precursor - Schizosaccharomyces pombe (Fission yeast)| Length = 1131 Score = 32.0 bits (71), Expect = 4.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Frame = +2 Query: 311 VDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKASSGQENLQPESFL- 487 + Y LG +Y+D V+ Y +A C D PC+ D +G + S + Sbjct: 253 ITYVKLGANPIYLDDSYWSTVKPTYGLALECEGDTCSGLPCYVDPRENGVQGCPEGSPIG 312 Query: 488 AGIYYFRICSY----TEQIAVINYLEK 556 AG F + + T +I V++Y E+ Sbjct: 313 AGGACFCVVGFQQGTTAKIVVVDYSEE 339
>Q96ZK5:Y1830_SULTO UPF0273 protein ST1830 - Sulfolobus tokodaii| Length = 283 Score = 31.6 bits (70), Expect = 6.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 197 NDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 ++IL GGI + + I G PG GK+ LG Q N + D G+ Sbjct: 14 DEILYGGIPERNIVLISGGPGTGKSILGKQFLYNGLVKKDEPGI 57
>P48296:RECA_THEAQ Protein recA - Thermus aquaticus| Length = 340 Score = 31.6 bits (70), Expect = 6.1 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS L+ LG GGI VTEI G GKT L + + Q GG A ++ Sbjct: 39 IPTGSLGLDLALGIGGIPRGRVTEIFGPESGGKTTLALTIIAQAQKG------GGVAAFV 92 Query: 350 DTE 358 D E Sbjct: 93 DAE 95
>P41054:RECA_STRAM Protein recA - Streptomyces ambofaciens| Length = 372 Score = 31.6 bits (70), Expect = 6.1 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I TGS +L+ LG GG+ V E+ G GKT L + N Q GG+ ++ Sbjct: 40 IPTGSTALDVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQ------KAGGQVAFV 93 Query: 350 DTE 358 D E Sbjct: 94 DAE 96
>Q08096:RCL1_YEAST RNA 3'-terminal phosphate cyclase-like protein - Saccharomyces| cerevisiae (Baker's yeast) Length = 367 Score = 31.6 bits (70), Expect = 6.1 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 15/141 (10%) Frame = +2 Query: 14 TRGSPLSMNHTDEEAYAALRGCDMAPNKTAQ---------------KLLLQGAQNAWDML 148 TR SP +N + A L+ N TA L+ Q Q W Sbjct: 198 TRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQKGWSYF 257 Query: 149 SEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 +E+ +GS+ + LG + C+ + EI VG+ QL + + V D G L Sbjct: 258 AEDIGD------AGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGRL 311 Query: 329 GGKAVYIDTEGSFMVERVYQI 391 ID ++ + +I Sbjct: 312 RINKEQIDERFIILLRDIKKI 332
>Q79PF4:KAIC_SYNP7 Circadian clock protein kinase kaiC - Synechococcus sp. (strain PCC| 7942) (Anacystis nidulans R2) Length = 519 Score = 31.6 bits (70), Expect = 6.1 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = +2 Query: 149 SEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGL 328 SE Q+ + T +DI GG+ T + G G GKT IQ N I D G+ Sbjct: 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72
>O58022:Y284_PYRHO UPF0273 protein PH0284 - Pyrococcus horikoshii| Length = 247 Score = 31.2 bits (69), Expect = 8.0 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 + + TG +++IL GGI + V + G PG GKT Q N Sbjct: 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46
>Q5JDS9:Y1590_PYRKO UPF0273 protein TK1590 - Pyrococcus kodakaraensis (Thermococcus| kodakaraensis) Length = 248 Score = 31.2 bits (69), Expect = 8.0 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 167 KHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 K + TG +++IL GGI + V + G PG GK+ Q N Sbjct: 3 KRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN 46
>Q9YBU4:Y1505_AERPE UPF0273 protein APE_1505.1 - Aeropyrum pernix| Length = 248 Score = 31.2 bits (69), Expect = 8.0 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 173 ITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 298 + TG ++DIL GGI + V + G PG GK+ Q N Sbjct: 5 VKTGIPGMDDILYGGIPRRNVVLLSGGPGTGKSIFSYQYLWN 46
>P62222:RECA_WOLPM Protein recA - Wolbachia pipientis wMel| Length = 355 Score = 31.2 bits (69), Expect = 8.0 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 173 ITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVDYGGLGGKAVYI 349 I+TGS +L+ LG GG+ + EI G GKT L + + Q GG +I Sbjct: 46 ISTGSIALDSALGVGGLPKGRIIEIFGPESSGKTTLALHVIAEAQ------KKGGSCAFI 99 Query: 350 DTE 358 D E Sbjct: 100 DAE 102
>Q6A902:RECA_PROAC Protein recA - Propionibacterium acnes| Length = 348 Score = 31.2 bits (69), Expect = 8.0 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Frame = +2 Query: 104 QKLLLQGAQNAWDMLSEEQSQK--HITTGSGSLNDILG-GGIHCKEVTEIGGVPGVGKTQ 274 Q++ Q + + L E+++ K I TGS +L+ LG GG+ + EI G GKT Sbjct: 16 QQIEKQHGKGSIMRLGEQETVKIAAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTT 75 Query: 275 LGIQLAINVQIPVDYGGLGGKAVYIDTE 358 + + N Q GG +ID E Sbjct: 76 VALHAIANAQAE------GGICAFIDAE 97
>Q6L8L1:KAIC_ACAMR Circadian clock protein kinase kaiC - Acaryochloris marina| Length = 522 Score = 31.2 bits (69), Expect = 8.0 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +2 Query: 146 LSEEQSQKHITTGSGSLNDILGGGIHCKEVTEIGGVPGVGKTQL 277 L++ S +++G +L+++ GGG + + G G GKT L Sbjct: 255 LTQRSSNARVSSGVQTLDEMCGGGFFIDSIILVTGATGTGKTLL 298
>Q5KYP6:ARAB_GEOKA Ribulokinase - Geobacillus kaustophilus| Length = 564 Score = 31.2 bits (69), Expect = 8.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 305 IPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIM 418 I +DYG G+AV +D EG+ + + V G I +++ Sbjct: 7 IGIDYGTESGRAVLVDLEGNEIADHVTPYPHGVIDEVL 44
>Q9S468:ARAB_BACST Ribulokinase - Bacillus stearothermophilus (Geobacillus| stearothermophilus) Length = 564 Score = 31.2 bits (69), Expect = 8.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 305 IPVDYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIM 418 I +DYG G+AV +D EG+ + + V G I +++ Sbjct: 7 IGIDYGTESGRAVLVDLEGNEIADHVTPYPHGVIDEVL 44 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 204,538,230 Number of extensions: 4655188 Number of successful extensions: 11892 Number of sequences better than 10.0: 190 Number of HSP's gapped: 11808 Number of HSP's successfully gapped: 192 Length of query: 368 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 253 Effective length of database: 69,142,514 Effective search space: 17493056042 Effective search space used: 17493056042 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
