ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf80l16 |
|---|---|
| Clone Library Name | barley_pub |
>P45406:CCMH_RHIME Cytochrome c-type biogenesis protein ccmH precursor - Rhizobium| meliloti (Sinorhizobium meliloti) Length = 151 Score = 71.6 bits (174), Expect = 6e-12 Identities = 43/134 (32%), Positives = 67/134 (50%) Frame = +1 Query: 325 EDVKQRQVVEDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYK 504 ++V +E RAR IS +RC C +QSI+DS A++A LR L+R+ +K+G SD+ + Sbjct: 24 DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83 Query: 505 KLEEDFGETVLYAPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNVHIMALNLVRGV 684 + +GE VL P+ + +T +W P I R+ V G Sbjct: 84 YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR--------VPGA 135 Query: 685 PLTPREKETMIDIL 726 PL+ EKE + +L Sbjct: 136 PLSDEEKERLDRLL 149
>P45405:CCMH_BRAJA Cytochrome c-type biogenesis protein ccmH precursor -| Bradyrhizobium japonicum Length = 160 Score = 71.6 bits (174), Expect = 6e-12 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 1/136 (0%) Frame = +1 Query: 325 EDVKQRQVVEDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYK 504 +++ E RAR++S +RC C +QSI+DS A +A LR L+R+ I +G S+ ++ Sbjct: 25 DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84 Query: 505 KLEEDFGETVLYAPKFDLQTAAIW-LSPVIXXXXXXXXXXYQKHRQRTNVHIMALNLVRG 681 L +GE VL P+F+ QT +W L P++ + R R+ + A Sbjct: 85 FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 138 Query: 682 VPLTPREKETMIDILT 729 PLTP E+ + +++ Sbjct: 139 PPLTPDEEARLAALMS 154
>P44942:NRFF_HAEIN Formate-dependent nitrite reductase complex nrfFG subunit precursor| - Haemophilus influenzae Length = 384 Score = 62.0 bits (149), Expect(2) = 3e-09 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Frame = +1 Query: 310 TMASEEDVKQRQVVEDRAR--NISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGK 483 T A D Q Q +DR R ++ ++RC +C +Q++ +S + +A LR + + GK Sbjct: 33 TQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDLRLEVYKMVDEGK 92 Query: 484 SDKEIYKKLEEDFGETVLYAPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNVHIMA 663 S+++I K+ FG+ V Y P F TA +WL PV + +++ + ++A Sbjct: 93 SNQQIIDKMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVA 152 Query: 664 LNL 672 L Sbjct: 153 QQL 155 Score = 20.4 bits (41), Expect(2) = 3e-09 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = +3 Query: 651 SHHGSEPRPRGSPDSKGEG 707 S GS PR +G P +G Sbjct: 165 STFGSSPRKQGEPSKLSKG 183
>Q9I3N0:CCMH_PSEAE Cytochrome c-type biogenesis protein ccmH precursor - Pseudomonas| aeruginosa Length = 155 Score = 60.1 bits (144), Expect = 2e-08 Identities = 28/77 (36%), Positives = 45/77 (58%) Frame = +1 Query: 355 DRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGETV 534 +R RN++ +RC +C +Q I DS A +A LR+ I +++ GKSD EI + +G+ V Sbjct: 34 ERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFV 93 Query: 535 LYAPKFDLQTAAIWLSP 585 Y P + +T +W P Sbjct: 94 RYKPPVNERTWLLWFGP 110
>Q8X5S5:NRFF_ECO57 Formate-dependent nitrite reductase complex nrfF subunit precursor| - Escherichia coli O157:H7 Length = 127 Score = 58.9 bits (141), Expect = 4e-08 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = +1 Query: 352 EDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGET 531 + +A NI+ +RC +C +Q++ +S A VAV +R + + GKS+ EI + E +G+ Sbjct: 32 QQQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDF 91 Query: 532 VLYAPKFDLQTAAIWLSPVI 591 V Y P QT +W PV+ Sbjct: 92 VRYNPPLTGQTLVLWALPVV 111
>P32711:NRFF_ECOLI Formate-dependent nitrite reductase complex nrfF subunit precursor| - Escherichia coli Length = 127 Score = 57.8 bits (138), Expect = 9e-08 Identities = 27/80 (33%), Positives = 46/80 (57%) Frame = +1 Query: 352 EDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGET 531 + +A NI+ +RC +C +Q++ +S A VAV +R + + GK++ EI + E +G+ Sbjct: 32 QQQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDF 91 Query: 532 VLYAPKFDLQTAAIWLSPVI 591 V Y P QT +W PV+ Sbjct: 92 VRYNPPLTGQTLVLWALPVV 111
>P52226:CCMH_PSEFL Cytochrome c-type biogenesis protein ccmH precursor - Pseudomonas| fluorescens Length = 156 Score = 56.2 bits (134), Expect = 3e-07 Identities = 27/77 (35%), Positives = 44/77 (57%) Frame = +1 Query: 355 DRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGETV 534 +R R+++ +RC +C +Q I DS A +A LRR I + GK D++I + + +G+ V Sbjct: 33 ERFRDLTKELRCPKCQNQDIADSNAPIATDLRREIFRMLGEGKDDQQIIDFMVDRYGDFV 92 Query: 535 LYAPKFDLQTAAIWLSP 585 Y P +TA +W P Sbjct: 93 RYKPALTGKTALLWFGP 109
>Q00501:CCMH_RHOCA Cytochrome c-type biogenesis protein ccl2 precursor - Rhodobacter| capsulatus (Rhodopseudomonas capsulata) Length = 149 Score = 55.1 bits (131), Expect = 6e-07 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Frame = +1 Query: 349 VEDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGE 528 +E RAR IS +RC C ++I++S A V+ LR +R+ + +G SD ++ +++ FGE Sbjct: 29 LEARARQISQVLRCPVCQGENIDESNAGVSRDLRLAVRERLVAGDSDAQVIDYIKDRFGE 88 Query: 529 TVLYAP-KFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNVHIMALN 669 VL+ P + W+ P + + + R+R + L+ Sbjct: 89 YVLFEPERRGANLILYWIGPAVLVVALGGIFLWLRGRRREEEPVPVLS 136
>P0ABN0:CCMH_SHIFL Cytochrome c-type biogenesis protein ccmH precursor - Shigella| flexneri Length = 350 Score = 54.7 bits (130), Expect = 7e-07 Identities = 30/100 (30%), Positives = 50/100 (50%) Frame = +1 Query: 352 EDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGET 531 E + R ++ +RC +C + SI DS + +A LR+ + + ++ GKS KEI + +G Sbjct: 31 EQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNF 90 Query: 532 VLYAPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNV 651 V Y P T +W+ PV+ Y + R+R V Sbjct: 91 VTYDPPLTPLTVLLWVLPVV-AIGIGGWVIYARSRRRVRV 129
>P0ABM9:CCMH_ECOLI Cytochrome c-type biogenesis protein ccmH precursor - Escherichia| coli Length = 350 Score = 54.7 bits (130), Expect = 7e-07 Identities = 30/100 (30%), Positives = 50/100 (50%) Frame = +1 Query: 352 EDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGET 531 E + R ++ +RC +C + SI DS + +A LR+ + + ++ GKS KEI + +G Sbjct: 31 EQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNF 90 Query: 532 VLYAPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNV 651 V Y P T +W+ PV+ Y + R+R V Sbjct: 91 VTYDPPLTPLTVLLWVLPVV-AIGIGGWVIYARSRRRVRV 129
>P46458:CCMH_HAEIN Cytochrome c-type biogenesis protein ccmH precursor - Haemophilus| influenzae Length = 459 Score = 50.4 bits (119), Expect = 1e-05 Identities = 21/80 (26%), Positives = 43/80 (53%) Frame = +1 Query: 352 EDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKSDKEIYKKLEEDFGET 531 E ++ ++RC +C + +I DS A +AV +R + + ++ GKS ++ + +G Sbjct: 32 ESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDVVDYMVARYGNF 91 Query: 532 VLYAPKFDLQTAAIWLSPVI 591 V Y P T +W++P++ Sbjct: 92 VTYDPPITASTLVLWIAPLL 111
>P47116:PTK2_YEAST Serine/threonine-protein kinase PTK2/STK2 - Saccharomyces| cerevisiae (Baker's yeast) Length = 818 Score = 34.7 bits (78), Expect = 0.80 Identities = 22/64 (34%), Positives = 35/64 (54%) Frame = +1 Query: 307 LTMASEEDVKQRQVVEDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDEIKSGKS 486 L +A +KQ+ V+D A+ +H+V E G++S + Q D L +DE+K+G Sbjct: 625 LEIAESPSLKQKSKVKDSAKTKTHDVG-DEGGNESTKPKQQDKK---ENLKKDEVKNGDK 680 Query: 487 DKEI 498 DK I Sbjct: 681 DKVI 684
>Q7TPV4:MBB1A_MOUSE Myb-binding protein 1A - Mus musculus (Mouse)| Length = 1344 Score = 34.3 bits (77), Expect = 1.0 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 9/193 (4%) Frame = +1 Query: 175 ALPQVLLRPAPRR---RICPAEIWPCAGQLLPQAPPRHSKVHTDNITLTMASEEDVKQRQ 345 A P L+R R ICP C +L P ++ DN+ +T + D KQ Q Sbjct: 658 AQPSNLMRQVVRSVFGHICPHLTPRCLQLILAVLSPVTNEDEDDNVVVT--DDADEKQLQ 715 Query: 346 VVEDRARNISHNVRC-----TECGSQSIE-DSQADVAVLLRRLIRDEIKSGKSDKEIYKK 507 ED + N +E G +S E D DV R+ + + +K+G + + + Sbjct: 716 HGEDEDSDNEDNKNSESDMDSEDGEESEEEDRDKDVDPGFRQQLMEVLKAGNALGGVDNE 775 Query: 508 LEEDFGETVLYAPKFDLQTAAIWLSPVIXXXXXXXXXXYQKHRQRTNVHIMALNLVRGVP 687 EE+ G+ + A +L + I ++ + R + I AL+L+ + Sbjct: 776 EEEELGDEAMMALDQNLASLFKEQKMRIQARNEEKNKLQKEKKLRRDFQIRALDLIEVLV 835 Query: 688 LTPREKETMIDIL 726 E ++++L Sbjct: 836 TKQPEHPLILELL 848
>P95629:PUTA_RHIME Bifunctional protein putA [Includes: Proline dehydrogenase -| Rhizobium meliloti (Sinorhizobium meliloti) Length = 1224 Score = 31.6 bits (70), Expect = 6.7 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +1 Query: 247 GQLLPQAP--PRHSKVHTDNITLTMASEEDVKQRQVVEDRARN 369 G+L+ AP P+HS VHTD + L A D K + + ARN Sbjct: 1020 GRLVTTAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEVEAARN 1062 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 169,672,753 Number of extensions: 3376545 Number of successful extensions: 9191 Number of sequences better than 10.0: 14 Number of HSP's gapped: 9163 Number of HSP's successfully gapped: 15 Length of query: 395 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 280 Effective length of database: 69,142,514 Effective search space: 19359903920 Effective search space used: 19359903920 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
