ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf75c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O46635:5HT2A_CANFA 5-hydroxytryptamine 2A receptor - Canis famil... 30 2.0
2A0RUI8:SYP_CENSY Prolyl-tRNA synthetase - Cenarchaeum symbiosum 30 2.6
3P40531:GVP36_YEAST Protein GVP36 - Saccharomyces cerevisiae (Bak... 30 2.6
4Q73FH3:Y033_BACC1 UPF0213 protein BCE_0033 - Bacillus cereus (st... 28 7.5

>O46635:5HT2A_CANFA 5-hydroxytryptamine 2A receptor - Canis familiaris (Dog)|
          Length = 470
 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
 Frame = -2

Query: 233 SYTNYLCVQRQK*NKILRSFWCNTLTRISHITVQLETVISHSQDGQKKNSKR-----RNY 69
           +++ Y+  Q ++  K L+    NT+  +++ + QL       Q GQKKNSK+      N 
Sbjct: 389 AFSRYIQCQYKENKKPLQLILVNTIPALAYKSSQL-------QMGQKKNSKKDAKSTDND 441

Query: 68  LSLRISLGSEKCQNKPVDQLSS 3
            S+ ++LG +  ++ P D +++
Sbjct: 442 YSM-VALGKQHSEDAPTDNINT 462



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>A0RUI8:SYP_CENSY Prolyl-tRNA synthetase - Cenarchaeum symbiosum|
          Length = 476

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 28  FWHFSLPSEIRSDK*FLRFEFFFWPSCECEMTVSSCTVICEIRVRVL 168
           FW+ +L +EI+S K FLR   F W       TV +C+   E  V  +
Sbjct: 135 FWNTALRAEIKSTKPFLRTSEFLWQEGH---TVHACSEEAESEVAAI 178



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>P40531:GVP36_YEAST Protein GVP36 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 326

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -2

Query: 236 YSYTNYLCVQRQK*NKILRSFWCNTLTRISHITVQLETVISHSQDGQKKNSKRRNYLSLR 57
           Y Y  Y+    +  N+  RS   + LT ++H T   E        G  K  K  NY   +
Sbjct: 85  YDYPKYI---NESVNEFSRSV-ASKLTELTHATSASEAQNILVAPGPIKEPKTLNYALSK 140

Query: 56  ISLGSEKCQNK 24
           ++L S +C NK
Sbjct: 141 VALNSSECLNK 151



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>Q73FH3:Y033_BACC1 UPF0213 protein BCE_0033 - Bacillus cereus (strain ATCC 10987)|
          Length = 96

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 RFPVAL*YVRFESEYCTRMTLEFYF 196
           R PVAL YV F  +  T M  E+YF
Sbjct: 45  RLPVALKYVEFHEDKRTAMQAEYYF 69


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 47,179,258
Number of extensions: 883062
Number of successful extensions: 1974
Number of sequences better than 10.0: 4
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 4
Length of query: 100
Length of database: 100,686,439
Length adjustment: 69
Effective length of query: 31
Effective length of database: 81,760,084
Effective search space: 2534562604
Effective search space used: 2534562604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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