Clone Information

BLAST Search Result

Clone Name	FLbaf75c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC187722.3\| Pan troglodytes BAC clone CH251-299E22 from chrom...	42	1.1
2	gb\|AC169698.1\| Rhesus Macaque BAC CH250-254N3 (Children's Hospi...	42	1.1
3	gb\|AC115751.6\| Mus musculus chromosome 1, clone RP23-16I21, comp...	42	1.1
4	dbj\|AK081980.1\| Mus musculus 16 days embryo head cDNA, RIKEN ful...	42	1.1
5	emb\|AL671862.6\| Human DNA sequence from clone RP11-810H18 on chr...	42	1.1
6	gb\|AF129108.2\|AF129108 Homo sapiens chromosome 21 clone cosmid c...	42	1.1
7	gb\|AF051934.2\|AF051934 Homo sapiens chromosome 21 clone PAC 220P...	42	1.1
8	dbj\|BS000196.1\| Pan troglodytes chromosome 22 clone:RP43-025M10,...	42	1.1
9	emb\|AJ229042.1\|HS229042 Homo sapiens 959 kb contig between AML1 ...	42	1.1
10	emb\|AL163267.2\|HS21C067 Homo sapiens chromosome 21 segment HS21C067	42	1.1
11	emb\|CT573240.6\| Zebrafish DNA sequence from clone CH73-19N18 in ...	40	4.2
12	gb\|AC185352.2\| Nasonia vitripennis BAC NV_Bb-46A5 (Clemson Univ...	40	4.2
13	gb\|AC118646.23\| Mus musculus chromosome 15, clone RP24-116A18, c...	40	4.2
14	gb\|AC091454.2\| Mus musculus chromosome X, clones RP21-438P10, RP...	40	4.2
15	gb\|AY312923.1\| Timmia megapolitana trnK-psbA intergenic spacer, ...	40	4.2
16	gb\|AC122514.4\| Mus musculus BAC clone RP24-455L10 from chromosom...	40	4.2
17	dbj\|AK143842.1\| Mus musculus 6 days neonate spleen cDNA, RIKEN f...	40	4.2
18	gb\|AC012151.14\| Homo sapiens 12 BAC RP11-677C1 (Roswell Park Can...	40	4.2
19	gb\|AC162465.3\| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cance...	40	4.2
20	gb\|AC006304.4\| Arabidopsis thaliana chromosome 2 clone T1O16 map...	40	4.2
21	gb\|AC006067.4\| Arabidopsis thaliana chromosome 2 clone T13P21 ma...	40	4.2
22	emb\|Z97205.1\|HS155D22 Human DNA sequence from clone RP1-155D22 o...	40	4.2
23	emb\|BX284668.4\| Human DNA sequence from clone RP11-108M9 on chro...	40	4.2
24	emb\|AL137851.12\| Human DNA sequence from clone RP11-6H18 on chro...	40	4.2
25	gb\|AE009951.2\| Fusobacterium nucleatum subsp. nucleatum ATCC 255...	40	4.2
26	emb\|BX548241.6\| Zebrafish DNA sequence from clone DKEY-23F5 in l...	40	4.2
27	gb\|AC158657.2\| Mus musculus 6 BAC RP23-395C12 (Roswell Park Canc...	40	4.2
28	gb\|AC126779.19\| Medicago truncatula clone mth2-34m14, complete s...	40	4.2
29	gb\|AC145211.3\| Mus musculus BAC clone RP23-419G4 from 8, complet...	40	4.2
30	emb\|AL840624.14\| Mouse DNA sequence from clone RP23-183D3 on chr...	40	4.2

>gb|AC187722.3| Pan troglodytes BAC clone CH251-299E22 from chromosome 7, complete
             sequence
          Length = 180043
 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 178   gaccttagaattttattttactttt 202
             |||||| ||||||||||||||||||
Sbjct: 64404 gacctttgaattttattttactttt 64428

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>gb|AC169698.1| Rhesus Macaque  BAC CH250-254N3 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 179377

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    ttagaattttattttactttt 202
              |||||||||||||||||||||
Sbjct: 178898 ttagaattttattttactttt 178878

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>gb|AC115751.6| Mus musculus chromosome 1, clone RP23-16I21, complete sequence
          Length = 256998

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    ttagaattttattttactttt 202
              |||||||||||||||||||||
Sbjct: 108272 ttagaattttattttactttt 108252

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>dbj|AK081980.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130091B17 product:peroxiredoxin 5,
            related sequence 3, full insert sequence
          Length = 2559

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 182  ttagaattttattttactttt 202
            |||||||||||||||||||||
Sbjct: 2387 ttagaattttattttactttt 2367

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>emb|AL671862.6| Human DNA sequence from clone RP11-810H18 on chromosome 1, complete
             sequence
          Length = 62080

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   cttagaattttattttacttt 201
             |||||||||||||||||||||
Sbjct: 23119 cttagaattttattttacttt 23139

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>gb|AF129108.2|AF129108 Homo sapiens chromosome 21 clone cosmid clone D75C1 map 21q22.2,
             complete sequence
          Length = 40874

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   gaattttattttacttttggc 205
             |||||||||||||||||||||
Sbjct: 28378 gaattttattttacttttggc 28358

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>gb|AF051934.2|AF051934 Homo sapiens chromosome 21 clone PAC 220P20 map 21q22.2, complete
             sequence
          Length = 144474

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   gaattttattttacttttggc 205
             |||||||||||||||||||||
Sbjct: 13676 gaattttattttacttttggc 13656

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>dbj|BS000196.1| Pan troglodytes chromosome 22 clone:RP43-025M10, map 22, complete
              sequences
          Length = 196989

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 185    gaattttattttacttttggc 205
              |||||||||||||||||||||
Sbjct: 113263 gaattttattttacttttggc 113243

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>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22,
              segment 2/3
          Length = 348050

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    gaattttattttacttttggc 205
              |||||||||||||||||||||
Sbjct: 216907 gaattttattttacttttggc 216927

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>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 185    gaattttattttacttttggc 205
              |||||||||||||||||||||
Sbjct: 321170 gaattttattttacttttggc 321150

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>emb|CT573240.6| Zebrafish DNA sequence from clone CH73-19N18 in linkage group 10,
             complete sequence
          Length = 65771

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tagaattttattttactttt 202
             ||||||||||||||||||||
Sbjct: 46706 tagaattttattttactttt 46725

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>gb|AC185352.2| Nasonia vitripennis  BAC NV_Bb-46A5 (Clemson University Genomics
             Nasonia vitripennis BAC Library) complete sequence
          Length = 97604

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   cttgtgaatgtgaaatgacg 123
             ||||||||||||||||||||
Sbjct: 90348 cttgtgaatgtgaaatgacg 90329

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>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    cacaggtagtttgtgtaact 233
              ||||||||||||||||||||
Sbjct: 167451 cacaggtagtttgtgtaact 167432

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>gb|AC091454.2| Mus musculus chromosome X, clones RP21-438P10, RP21-382F2, RP21-118B24,
              Map qA7.1, complete sequences
          Length = 393632

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    cttagaattttattttactt 200
              ||||||||||||||||||||
Sbjct: 311464 cttagaattttattttactt 311483

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>gb|AY312923.1| Timmia megapolitana trnK-psbA intergenic spacer, partial sequence;
            photosystem II 32 kDa protein (psbA) gene, complete cds;
            psbA-trnH intergenic spacer, complete sequence; and
            tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  agaatgaccttagaatttta 192
            ||||||||||||||||||||
Sbjct: 1407 agaatgaccttagaatttta 1388

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>gb|AC122514.4| Mus musculus BAC clone RP24-455L10 from chromosome 8, complete sequence
          Length = 171839

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttagaattttattttacttt 201
             ||||||||||||||||||||
Sbjct: 52652 ttagaattttattttacttt 52633

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>dbj|AK143842.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430204C11 product:hypothetical protein,
           full insert sequence
          Length = 2112

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 tagaattttattttactttt 202
           ||||||||||||||||||||
Sbjct: 322 tagaattttattttactttt 303

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>gb|AC012151.14| Homo sapiens 12 BAC RP11-677C1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 83945

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tggcttattttggcattttt 40
             ||||||||||||||||||||
Sbjct: 60681 tggcttattttggcattttt 60662

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>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203546

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tagaattttattttactttt 202
             ||||||||||||||||||||
Sbjct: 88984 tagaattttattttactttt 89003

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>gb|AC006304.4| Arabidopsis thaliana chromosome 2 clone T1O16 map mi398, complete
            sequence
          Length = 89281

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 180  ccttagaattttattttacttttg 203
            ||||||||||||||||| ||||||
Sbjct: 3545 ccttagaattttattttgcttttg 3522

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>gb|AC006067.4| Arabidopsis thaliana chromosome 2 clone T13P21 map mi398, complete
              sequence
          Length = 126337

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 180    ccttagaattttattttacttttg 203
              ||||||||||||||||| ||||||
Sbjct: 125961 ccttagaattttattttgcttttg 125938

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>emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 on chromosome 6q27 Contains a
              novel gene, complete sequence
          Length = 148851

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gaccttagaattttatttta 197
              ||||||||||||||||||||
Sbjct: 115730 gaccttagaattttatttta 115711

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>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four
             novel genes, a novel pseudogene, the 5' end of the CROCC
             gene for ciliary rootlet coiled-coil rootletin (KIAA0445)
             and two CpG islands, complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tagaattttattttactttt 202
             ||||||||||||||||||||
Sbjct: 83299 tagaattttattttactttt 83280

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>emb|AL137851.12| Human DNA sequence from clone RP11-6H18 on chromosome 9p23-24.3 Contains
              a novel gene and part of a variant of the PTPRD gene for
              protein tyrosine phosphatase, receptor type, D (HPTP, PTPD,
              HPTPD), complete sequence
          Length = 139182

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    aattttattttacttttggc 205
              ||||||||||||||||||||
Sbjct: 107494 aattttattttacttttggc 107475

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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     tttccagttgcactgtaata 144
               ||||||||||||||||||||
Sbjct: 1163246 tttccagttgcactgtaata 1163265

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>emb|BX548241.6| Zebrafish DNA sequence from clone DKEY-23F5 in linkage group 10,
             complete sequence
          Length = 92780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tagaattttattttactttt 202
             ||||||||||||||||||||
Sbjct: 92682 tagaattttattttactttt 92663

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>gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 202215

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tagaattttattttactttt 202
             ||||||||||||||||||||
Sbjct: 53301 tagaattttattttactttt 53282

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>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence
          Length = 128856

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ttagaattttattttacttt 201
             ||||||||||||||||||||
Sbjct: 35051 ttagaattttattttacttt 35070

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>gb|AC145211.3| Mus musculus BAC clone RP23-419G4 from 8, complete sequence
          Length = 191166

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttagaattttattttacttt 201
             ||||||||||||||||||||
Sbjct: 85362 ttagaattttattttacttt 85343

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>emb|AL840624.14| Mouse DNA sequence from clone RP23-183D3 on chromosome X, complete
              sequence
          Length = 124795

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    cttagaattttattttactt 200
              ||||||||||||||||||||
Sbjct: 111482 cttagaattttattttactt 111501


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 53,331,064
Number of extensions: 3337661
Number of successful extensions: 291776
Number of sequences better than 10.0: 30
Number of HSP's gapped: 291776
Number of HSP's successfully gapped: 30
Length of query: 300
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 278
Effective length of database: 18,508,616,841
Effective search space: 5145395481798
Effective search space used: 5145395481798
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result