ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf71n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q2YDG0:GPC5C_BOVIN G-protein coupled receptor family C group 5 m... 32 1.8
2Q645S2:T2R60_MACMU Taste receptor type 2 member 60 - Macaca mula... 32 2.3
3Q645Z0:T2R60_GORGO Taste receptor type 2 member 60 - Gorilla gor... 31 3.9
4Q646A5:T2R60_PANTR Taste receptor type 2 member 60 - Pan troglod... 31 5.1
5Q646D0:T2R60_PANPA Taste receptor type 2 member 60 - Pan paniscu... 31 5.1

>Q2YDG0:GPC5C_BOVIN G-protein coupled receptor family C group 5 member C precursor -|
           Bos taurus (Bovine)
          Length = 442
 Score = 32.3 bits (72), Expect = 1.8
 Identities = 18/82 (21%), Positives = 39/82 (47%)
 Frame = -3

Query: 256 AGGWIPVSVCSC*WIATMSMPVSLWLRRVIIISRRASMPGLWRRVCRVGDGWRRVGAWVV 77
           + GW+ VS C+   IA     ++L    ++++    +  G W  +C     WR+ G +++
Sbjct: 194 SAGWVAVSPCA---IANADFVMALIYVMLLLL---CAFSGAWSALCGRFKRWRKHGVFIL 247

Query: 76  APKPFAVCVATALLVSTSHGDR 11
                ++ V    +V  ++G+R
Sbjct: 248 LTTTASIAVWVVWIVMYTYGNR 269



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>Q645S2:T2R60_MACMU Taste receptor type 2 member 60 - Macaca mulatta (Rhesus macaque)|
          Length = 318

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 580 ISSLLWIDPLGRKLFPLVFSTKETMLPSKEAHVLAMLELAAMAITVASMLLEL 422
           I  +L I  LGR +   + +T     PS +AHV A+L L ++A+   S  L L
Sbjct: 211 ICMILLITSLGRHMEKALLTTSGFREPSVQAHVKALLALLSLAMLFISYFLSL 263



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>Q645Z0:T2R60_GORGO Taste receptor type 2 member 60 - Gorilla gorilla gorilla (Lowland|
           gorilla)
          Length = 318

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 580 ISSLLWIDPLGRKLFPLVFSTKETMLPSKEAHVLAMLELAAMAITVASMLLEL 422
           I  +L I  LGR +   + +T     PS +AH+ A+L L + A+   S  L L
Sbjct: 211 ICMILLITSLGRHMKKALLTTSGFREPSMQAHIKALLALLSFAMLFISYFLSL 263



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>Q646A5:T2R60_PANTR Taste receptor type 2 member 60 - Pan troglodytes (Chimpanzee)|
          Length = 318

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 580 ISSLLWIDPLGRKLFPLVFSTKETMLPSKEAHVLAMLELAAMAITVASMLLEL 422
           I  +L I  LGR +   + +T     PS +AH+ A+L L + A+   S  L L
Sbjct: 211 ICMILLITSLGRHMKKALLTTSGFREPSVQAHIKALLALLSFAMLFISYFLSL 263



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>Q646D0:T2R60_PANPA Taste receptor type 2 member 60 - Pan paniscus (Pygmy chimpanzee)|
           (Bonobo)
          Length = 318

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 580 ISSLLWIDPLGRKLFPLVFSTKETMLPSKEAHVLAMLELAAMAITVASMLLEL 422
           I  +L I  LGR +   + +T     PS +AH+ A+L L + A+   S  L L
Sbjct: 211 ICMILLITSLGRHMKKALLTTSGFREPSVQAHIKALLALLSFAMLFISYFLSL 263


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 90,351,506
Number of extensions: 1786873
Number of successful extensions: 5366
Number of sequences better than 10.0: 5
Number of HSP's gapped: 5363
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 122
Effective length of database: 70,513,989
Effective search space: 8602706658
Effective search space used: 8602706658
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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