ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf75b22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001070381.1| Oryza sativa (japonica cultivar-group) Os09g0547000 (Os09g0547000) mRNA, complete cds Length = 585 Score = 143 bits (72), Expect = 8e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 335 gatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagaga 394 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 339 gatcacattgccttgtgatgcctcagtgatggagtacgtgatgtgtttgattaggagaga 398 Query: 395 ggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 |||||||||||| | ||||||||| |||||||||||||||| ||||| Sbjct: 399 tgcctctgaagagattgagaaggcgctcctgagctccatagttaggcc 446 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggctt 319 |||||| || ||||||||||||||||||||||||| Sbjct: 289 gagctcttaagggtgtctcaagaggagtttggctt 323 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 198 gcagacaggggccattgtgttgtgtacaccgccgatggatcacggttcgaggt 250 ||||||| |||||||||||| |||||||| | ||||| |||| |||||||| Sbjct: 202 gcagacaagggccattgtgtgttgtacaccactgatggggcacgcttcgaggt 254
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 143 bits (72), Expect = 8e-31 Identities = 99/108 (91%) Strand = Plus / Minus Query: 335 gatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagaga 394 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 21303441 gatcacattgccttgtgatgcctcagtgatggagtacgtgatgtgtttgattaggagaga 21303382 Query: 395 ggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 |||||||||||| | ||||||||| |||||||||||||||| ||||| Sbjct: 21303381 tgcctctgaagagattgagaaggcgctcctgagctccatagttaggcc 21303334 Score = 141 bits (71), Expect = 3e-30 Identities = 189/226 (83%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 231 gatggatcacggttcgaggtcccattggcttaccttggcacaatggccttcagagagctc 290 |||||| ||||||||||||| ||| || | ||||| ||||| |||| |||| | ||||| Sbjct: 21305477 gatggagcacggttcgaggtaccactgccgtacctcggcacgatggtcttcggcgagctt 21305418 Query: 291 ctacgggtgtctcaagaggagtttggcttc--agctgt-gatggcaggatcacgttgccc 347 || | ||||||| ||||||||||||||| || || |||||||||||||||||||| Sbjct: 21305417 ctgatgatgtctcaggaggagtttggcttcgcaggtgacgatggcaggatcacgttgccg 21305358 Query: 348 tgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagag 407 || ||||| || |||||||||||||| ||||| || |||||||||| |||||||||||| Sbjct: 21305357 tgcgatgcgtcagtgatggagtatgtcttgtgtctgcttaggagagatgcctctgaagag 21305298 Query: 408 gtcgagaaggcgttcctgagctccatagtgaggccttgctacaatg 453 || |||| ||| ||| |||||||||| | |||||||||| |||||| Sbjct: 21305297 gttgagagggcattcttgagctccatggcgaggccttgccacaatg 21305252 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 330 ggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattagg 389 ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||| |||| Sbjct: 21276414 ggcaggatcacgttgccgtgcgatgcgtcggtgatggagtacgtcatgtgcttgcttagc 21276473 Query: 390 agagaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||||||||||||||||||| ||||||| |||||||||| | |||||| Sbjct: 21276474 agagatgcctctgaagaggtcgagagggcgttcttgagctccatggcgaggcc 21276526 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||| || || |||||||||||||||||||||||| | || || ||||| ||| Sbjct: 21281141 gagctcttaaggatgtctcaagaggagtttggcttcacaagcgactacaaaatcacattg 21281200 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 |||| ||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 21281201 ccctatgatgccgcagtgatggagtacgtgatgtgtttgattaggagagacgcctctgag 21281260 Query: 405 gaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||| ||| ||||||| |||||||| ||||| Sbjct: 21281261 gaggtttagagggcactcctgagttccatagttaggcc 21281298 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Minus Query: 333 aggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggaga 392 |||||||||||||| || ||||| || |||||||||||||| |||| || |||| ||| Sbjct: 21297294 aggatcacgttgccgtgcgatgcgtcggtgatggagtatgtcttgtgcctgcttagaaga 21297235 Query: 393 gaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggccttgc 446 || ||||||||||||||||||| ||||||| |||||||||| | ||||||||| Sbjct: 21297234 gatgcctctgaagaggtcgagagggcgttcttgagctccatggccaggccttgc 21297181 Score = 77.8 bits (39), Expect = 4e-11 Identities = 153/191 (80%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| |||||| | ||||| || |||| || |||| | |||||||| || || Sbjct: 21268345 cggttcaaggtgccattgccgtacctcggaacaacggtcttcggcgagctcctgaggatg 21268286 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || |||||||| || || ||| | ||||||| |||||||| ||||||||||||| | Sbjct: 21268285 tcacaagaggaattcgggttcgccggtgatgggaggatcacactgccctgtgatgcggcc 21268226 Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcg 419 |||||||||||||| ||||| ||| | |||||| | || || || || || |||| |||| Sbjct: 21268225 gtgatggagtatgtcatgtgcttgctgaggagaaatgcatcggaggatgttgagagggcg 21268166 Query: 420 ttcctgagctc 430 ||||||||||| Sbjct: 21268165 ttcctgagctc 21268155 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||| |||||||||||||| |||||||||||| ||| |||||| || ||||| || || Sbjct: 21289241 cggtttgaggtcccattggcgtaccttggcacagtggtcttcagtgaactcctgaggatg 21289300 Query: 300 tctcaagaggagtttggcttca 321 || || |||||||||||||||| Sbjct: 21289301 tcccaggaggagtttggcttca 21289322 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 tgatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgat 385 ||||||||||||||||||||| | |||| | ||||||||| |||| |||||| || | Sbjct: 21271797 tgatggcaggatcacgttgccgagctatgcttgggtgatggagcatgtcatgtgtctgct 21271856 Query: 386 taggagagaggcctctgaagaggtcgaga 414 ||||||||| | ||||||||||||||||| Sbjct: 21271857 taggagagatgtctctgaagaggtcgaga 21271885 Score = 69.9 bits (35), Expect = 1e-08 Identities = 152/191 (79%) Strand = Plus / Minus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| || |||||| |||||||| ||| |||| Sbjct: 21299999 ttcgaggtcccgttggcgtacctcggcacggcggtcttcagtgagctcctccggatgtca 21299940 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctctgtg 362 || ||||||||||| ||| ||||||||||||| | |||| |||||||| ||||| Sbjct: 21299939 caggaggagtttggtttctcgatcgatggcaggatcatgctgccttgtgatgctgctgtg 21299880 Query: 363 atggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcgttc 422 |||||||||| ||||| ||| | |||||| | || || | ||||| ||||| || || Sbjct: 21299879 atggagtatgccatgtgcttgctcaggagaaatgcttcggttgaggtggagaaagcattg 21299820 Query: 423 ctgagctccat 433 ||||||||||| Sbjct: 21299819 ctgagctccat 21299809 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Plus Query: 261 taccttggcacaatggccttcagagagctcctacgggtgtctcaagaggagtttggcttc 320 ||||| ||||| |||| |||| | |||||||| || |||| || ||||||||||||||| Sbjct: 21294994 tacctcggcacgatggtcttcggtgagctcctgaggatgtcacaggaggagtttggcttc 21295053 Query: 321 agctgtgatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgt 380 | ||||||| | |||||| || || ||||||||| ||||||||||| |||||||| Sbjct: 21295054 acgagtgatggaaagatcacattaccatgtgatgccatggtgatggagtacgtgatgtgc 21295113 Query: 381 ttgattaggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 || |||| ||| | || || | ||| || |||||||| ||| |||||||||| Sbjct: 21295114 ttacttagaagaaatgcttcagtagatgttgagaaggcattcttgagctccat 21295166 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 327 gatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgatt 386 ||||| |||||||||||| | || || | ||||| |||||||| || ||||| || || Sbjct: 21278777 gatgggaggatcacgttgacatgcgacacatctgttatggagtacgtcatgtgcttactt 21278836 Query: 387 aggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 |||||||| |||||| ||||||| |||| ||||||| || ||||||| Sbjct: 21278837 aggagagatgcctctaaagaggttgagagggcgttcttgtgctccat 21278883 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggt 409 |||||||||||||||||||| ||| |||||||| || |||| |||||||| Sbjct: 21264648 gtgatggagtatgtgatgtgcttgcttaggagaaagccctcggaagaggt 21264599 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| || |||| Sbjct: 21284974 ttcgaggtcccgttggcgtacctcggcactgcagtcttcagtgagctcctcaggatgtca 21285033 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgc 355 || ||||||||||| |||| | ||||||||||||| |||||| |||||||| Sbjct: 21285034 caggaggagtttggtttcacgagcgatggcaggatcatgttgccttgtgatgc 21285086 Score = 58.0 bits (29), Expect = 4e-05 Identities = 107/133 (80%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||||||||||||||||| |||||||||| | || ||||| || ||||| || || Sbjct: 21293098 cggttcgaggtcccattggtgtaccttggcatgagggtcttcattgaactcctgaggatg 21293157 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || || |||||||||||||||| | |||||||| |||| | |||| |||||||| | Sbjct: 21293158 tcccaggaggagtttggcttcacgagcgatggcagaatcatgctgccttgtgatgctgca 21293217 Query: 360 gtgatggagtatg 372 | ||||||||||| Sbjct: 21293218 gagatggagtatg 21293230 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 80 cagaaccatgattcatccaaagaagctggctcaactggctaagaagttgcag 131 |||||||||||| ||| |||||||||| ||||| |||||| |||||||||| Sbjct: 21278512 cagaaccatgatccatgcaaagaagcttgctcagttggctaggaagttgcag 21278563 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 80 cagaaccatgattcatccaaagaagctggctcaactggctaagaagttgcag 131 |||||||||||||||| |||||||||| ||||| |||| | |||||||||| Sbjct: 21305637 cagaaccatgattcatgcaaagaagcttgctcagttggccaggaagttgcag 21305586 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 285 gagctcctacgggtgtctcaagaggagtttggctt 319 |||||| || ||||||||||||||||||||||||| Sbjct: 21303491 gagctcttaagggtgtctcaagaggagtttggctt 21303457 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 405 gaggtcgagaaggcgttcctgagctcc 431 |||||||||| |||||||||||||||| Sbjct: 21306845 gaggtcgagagggcgttcctgagctcc 21306871 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 404 agaggtcgagaaggcgttcctgagctccatagtga 438 |||||| |||||||||||| |||||||||| |||| Sbjct: 21308317 agaggttgagaaggcgttcttgagctccatggtga 21308351 Score = 44.1 bits (22), Expect = 0.56 Identities = 79/98 (80%) Strand = Plus / Plus Query: 333 aggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggaga 392 ||||||||| ||||||| || || | | ||||||||| |||||||| ||| | ||||| Sbjct: 21298615 aggatcacgctgccctgcgacgcggcggcgatggagtacgtgatgtgcttgctgaggagg 21298674 Query: 393 gaggcctctgaagaggtcgagaaggcgttcctgagctc 430 | || || || ||||| |||| ||||||||||||||| Sbjct: 21298675 aacgcgtcggaggaggttgagagggcgttcctgagctc 21298712 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 284 agagctcctacgggtgtctcaagaggagtttggcttca 321 ||||||||| || ||||||| |||||||||||||||| Sbjct: 21301862 agagctcctcaggatgtctcaggaggagtttggcttca 21301825 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 222 tacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 ||||||||||| || | ||||||||||| |||||||| ||||| ||||| Sbjct: 21308135 tacaccgccgacggcgcgcggttcgaggtgccattggcgtacctcggcac 21308184 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| || | ||||||||||| |||||| | ||||| ||||| Sbjct: 21276300 gtgtacaccgccgacggcgcgcggttcgaggtgccattgccgtacctaggcac 21276352 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 198 gcagacaggggccattgtgttgtgtacaccgccgatggatcacggttcgaggt 250 ||||||| |||||||||||| |||||||| | ||||| |||| |||||||| Sbjct: 21303578 gcagacaagggccattgtgtgttgtacaccactgatggggcacgcttcgaggt 21303526 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 97 caaagaagctggctcaactggctaagaagttgcaga 132 |||||||||| ||||| |||| ||||||||||||| Sbjct: 21276160 caaagaagcttgctcagttggccaagaagttgcaga 21276195 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tgtacaccgccgatggatcacggttcgaggtcccattggc 259 |||||||||||||||| |||||||||||||| ||||| Sbjct: 21282837 tgtacaccgccgatgggaggcggttcgaggtcccgttggc 21282876 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 108 gctcaactggctaagaagttgcagaggctggtggca 143 ||||||||||| ||||||| ||||||| ||| |||| Sbjct: 21284833 gctcaactggccaagaagtggcagaggatggcggca 21284868 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| ||| | ||||||||||| Sbjct: 21291158 cggttcgaggtcccgttgacgtaccttggcac 21291189
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 143 bits (72), Expect = 8e-31 Identities = 99/108 (91%) Strand = Plus / Minus Query: 335 gatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagaga 394 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 35820 gatcacattgccttgtgatgcctcagtgatggagtacgtgatgtgtttgattaggagaga 35761 Query: 395 ggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 |||||||||||| | ||||||||| |||||||||||||||| ||||| Sbjct: 35760 tgcctctgaagagattgagaaggcgctcctgagctccatagttaggcc 35713 Score = 141 bits (71), Expect = 3e-30 Identities = 189/226 (83%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 231 gatggatcacggttcgaggtcccattggcttaccttggcacaatggccttcagagagctc 290 |||||| ||||||||||||| ||| || | ||||| ||||| |||| |||| | ||||| Sbjct: 37856 gatggagcacggttcgaggtaccactgccgtacctcggcacgatggtcttcggcgagctt 37797 Query: 291 ctacgggtgtctcaagaggagtttggcttc--agctgt-gatggcaggatcacgttgccc 347 || | ||||||| ||||||||||||||| || || |||||||||||||||||||| Sbjct: 37796 ctgatgatgtctcaggaggagtttggcttcgcaggtgacgatggcaggatcacgttgccg 37737 Query: 348 tgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagag 407 || ||||| || |||||||||||||| ||||| || |||||||||| |||||||||||| Sbjct: 37736 tgcgatgcgtcagtgatggagtatgtcttgtgtctgcttaggagagatgcctctgaagag 37677 Query: 408 gtcgagaaggcgttcctgagctccatagtgaggccttgctacaatg 453 || |||| ||| ||| |||||||||| | |||||||||| |||||| Sbjct: 37676 gttgagagggcattcttgagctccatggcgaggccttgccacaatg 37631 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 330 ggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattagg 389 ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||| |||| Sbjct: 8793 ggcaggatcacgttgccgtgcgatgcgtcggtgatggagtacgtcatgtgcttgcttagc 8852 Query: 390 agagaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||||||||||||||||||| ||||||| |||||||||| | |||||| Sbjct: 8853 agagatgcctctgaagaggtcgagagggcgttcttgagctccatggcgaggcc 8905 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||| || || |||||||||||||||||||||||| | || || ||||| ||| Sbjct: 13520 gagctcttaaggatgtctcaagaggagtttggcttcacaagcgactacaaaatcacattg 13579 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 |||| ||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 13580 ccctatgatgccgcagtgatggagtacgtgatgtgtttgattaggagagacgcctctgag 13639 Query: 405 gaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||| ||| ||||||| |||||||| ||||| Sbjct: 13640 gaggtttagagggcactcctgagttccatagttaggcc 13677 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Minus Query: 333 aggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggaga 392 |||||||||||||| || ||||| || |||||||||||||| |||| || |||| ||| Sbjct: 29673 aggatcacgttgccgtgcgatgcgtcggtgatggagtatgtcttgtgcctgcttagaaga 29614 Query: 393 gaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggccttgc 446 || ||||||||||||||||||| ||||||| |||||||||| | ||||||||| Sbjct: 29613 gatgcctctgaagaggtcgagagggcgttcttgagctccatggccaggccttgc 29560 Score = 77.8 bits (39), Expect = 4e-11 Identities = 153/191 (80%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| |||||| | ||||| || |||| || |||| | |||||||| || || Sbjct: 724 cggttcaaggtgccattgccgtacctcggaacaacggtcttcggcgagctcctgaggatg 665 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || |||||||| || || ||| | ||||||| |||||||| ||||||||||||| | Sbjct: 664 tcacaagaggaattcgggttcgccggtgatgggaggatcacactgccctgtgatgcggcc 605 Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcg 419 |||||||||||||| ||||| ||| | |||||| | || || || || || |||| |||| Sbjct: 604 gtgatggagtatgtcatgtgcttgctgaggagaaatgcatcggaggatgttgagagggcg 545 Query: 420 ttcctgagctc 430 ||||||||||| Sbjct: 544 ttcctgagctc 534 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||| |||||||||||||| |||||||||||| ||| |||||| || ||||| || || Sbjct: 21620 cggtttgaggtcccattggcgtaccttggcacagtggtcttcagtgaactcctgaggatg 21679 Query: 300 tctcaagaggagtttggcttca 321 || || |||||||||||||||| Sbjct: 21680 tcccaggaggagtttggcttca 21701 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 326 tgatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgat 385 ||||||||||||||||||||| | |||| | ||||||||| |||| |||||| || | Sbjct: 4176 tgatggcaggatcacgttgccgagctatgcttgggtgatggagcatgtcatgtgtctgct 4235 Query: 386 taggagagaggcctctgaagaggtcgaga 414 ||||||||| | ||||||||||||||||| Sbjct: 4236 taggagagatgtctctgaagaggtcgaga 4264 Score = 69.9 bits (35), Expect = 1e-08 Identities = 152/191 (79%) Strand = Plus / Minus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| || |||||| |||||||| ||| |||| Sbjct: 32378 ttcgaggtcccgttggcgtacctcggcacggcggtcttcagtgagctcctccggatgtca 32319 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctctgtg 362 || ||||||||||| ||| ||||||||||||| | |||| |||||||| ||||| Sbjct: 32318 caggaggagtttggtttctcgatcgatggcaggatcatgctgccttgtgatgctgctgtg 32259 Query: 363 atggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcgttc 422 |||||||||| ||||| ||| | |||||| | || || | ||||| ||||| || || Sbjct: 32258 atggagtatgccatgtgcttgctcaggagaaatgcttcggttgaggtggagaaagcattg 32199 Query: 423 ctgagctccat 433 ||||||||||| Sbjct: 32198 ctgagctccat 32188 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Plus Query: 261 taccttggcacaatggccttcagagagctcctacgggtgtctcaagaggagtttggcttc 320 ||||| ||||| |||| |||| | |||||||| || |||| || ||||||||||||||| Sbjct: 27373 tacctcggcacgatggtcttcggtgagctcctgaggatgtcacaggaggagtttggcttc 27432 Query: 321 agctgtgatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgt 380 | ||||||| | |||||| || || ||||||||| ||||||||||| |||||||| Sbjct: 27433 acgagtgatggaaagatcacattaccatgtgatgccatggtgatggagtacgtgatgtgc 27492 Query: 381 ttgattaggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 || |||| ||| | || || | ||| || |||||||| ||| |||||||||| Sbjct: 27493 ttacttagaagaaatgcttcagtagatgttgagaaggcattcttgagctccat 27545 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 327 gatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgatt 386 ||||| |||||||||||| | || || | ||||| |||||||| || ||||| || || Sbjct: 11156 gatgggaggatcacgttgacatgcgacacatctgttatggagtacgtcatgtgcttactt 11215 Query: 387 aggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 |||||||| |||||| ||||||| |||| ||||||| || ||||||| Sbjct: 11216 aggagagatgcctctaaagaggttgagagggcgttcttgtgctccat 11262 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| || |||| Sbjct: 17353 ttcgaggtcccgttggcgtacctcggcactgcagtcttcagtgagctcctcaggatgtca 17412 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgc 355 || ||||||||||| |||| | ||||||||||||| |||||| |||||||| Sbjct: 17413 caggaggagtttggtttcacgagcgatggcaggatcatgttgccttgtgatgc 17465 Score = 58.0 bits (29), Expect = 4e-05 Identities = 107/133 (80%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||||||||||||||||| |||||||||| | || ||||| || ||||| || || Sbjct: 25477 cggttcgaggtcccattggtgtaccttggcatgagggtcttcattgaactcctgaggatg 25536 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || || |||||||||||||||| | |||||||| |||| | |||| |||||||| | Sbjct: 25537 tcccaggaggagtttggcttcacgagcgatggcagaatcatgctgccttgtgatgctgca 25596 Query: 360 gtgatggagtatg 372 | ||||||||||| Sbjct: 25597 gagatggagtatg 25609 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 80 cagaaccatgattcatccaaagaagctggctcaactggctaagaagttgcag 131 |||||||||||| ||| |||||||||| ||||| |||||| |||||||||| Sbjct: 10891 cagaaccatgatccatgcaaagaagcttgctcagttggctaggaagttgcag 10942 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 80 cagaaccatgattcatccaaagaagctggctcaactggctaagaagttgcag 131 |||||||||||||||| |||||||||| ||||| |||| | |||||||||| Sbjct: 38016 cagaaccatgattcatgcaaagaagcttgctcagttggccaggaagttgcag 37965 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 285 gagctcctacgggtgtctcaagaggagtttggctt 319 |||||| || ||||||||||||||||||||||||| Sbjct: 35870 gagctcttaagggtgtctcaagaggagtttggctt 35836 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 405 gaggtcgagaaggcgttcctgagctcc 431 |||||||||| |||||||||||||||| Sbjct: 39224 gaggtcgagagggcgttcctgagctcc 39250 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 404 agaggtcgagaaggcgttcctgagctccatagtga 438 |||||| |||||||||||| |||||||||| |||| Sbjct: 40696 agaggttgagaaggcgttcttgagctccatggtga 40730 Score = 44.1 bits (22), Expect = 0.56 Identities = 79/98 (80%) Strand = Plus / Plus Query: 333 aggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggaga 392 ||||||||| ||||||| || || | | ||||||||| |||||||| ||| | ||||| Sbjct: 30994 aggatcacgctgccctgcgacgcggcggcgatggagtacgtgatgtgcttgctgaggagg 31053 Query: 393 gaggcctctgaagaggtcgagaaggcgttcctgagctc 430 | || || || ||||| |||| ||||||||||||||| Sbjct: 31054 aacgcgtcggaggaggttgagagggcgttcctgagctc 31091 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 284 agagctcctacgggtgtctcaagaggagtttggcttca 321 ||||||||| || ||||||| |||||||||||||||| Sbjct: 34241 agagctcctcaggatgtctcaggaggagtttggcttca 34204 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 222 tacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 ||||||||||| || | ||||||||||| |||||||| ||||| ||||| Sbjct: 40514 tacaccgccgacggcgcgcggttcgaggtgccattggcgtacctcggcac 40563 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| || | ||||||||||| |||||| | ||||| ||||| Sbjct: 8679 gtgtacaccgccgacggcgcgcggttcgaggtgccattgccgtacctaggcac 8731 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 198 gcagacaggggccattgtgttgtgtacaccgccgatggatcacggttcgaggt 250 ||||||| |||||||||||| |||||||| | ||||| |||| |||||||| Sbjct: 35957 gcagacaagggccattgtgtgttgtacaccactgatggggcacgcttcgaggt 35905 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 97 caaagaagctggctcaactggctaagaagttgcaga 132 |||||||||| ||||| |||| ||||||||||||| Sbjct: 8539 caaagaagcttgctcagttggccaagaagttgcaga 8574 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tgtacaccgccgatggatcacggttcgaggtcccattggc 259 |||||||||||||||| |||||||||||||| ||||| Sbjct: 15216 tgtacaccgccgatgggaggcggttcgaggtcccgttggc 15255 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 108 gctcaactggctaagaagttgcagaggctggtggca 143 ||||||||||| ||||||| ||||||| ||| |||| Sbjct: 17212 gctcaactggccaagaagtggcagaggatggcggca 17247 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| ||| | ||||||||||| Sbjct: 23537 cggttcgaggtcccgttgacgtaccttggcac 23568
>dbj|AK062728.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E02, full insert sequence Length = 585 Score = 143 bits (72), Expect = 8e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 335 gatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagaga 394 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 339 gatcacattgccttgtgatgcctcagtgatggagtacgtgatgtgtttgattaggagaga 398 Query: 395 ggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 |||||||||||| | ||||||||| |||||||||||||||| ||||| Sbjct: 399 tgcctctgaagagattgagaaggcgctcctgagctccatagttaggcc 446 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggctt 319 |||||| || ||||||||||||||||||||||||| Sbjct: 289 gagctcttaagggtgtctcaagaggagtttggctt 323 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 198 gcagacaggggccattgtgttgtgtacaccgccgatggatcacggttcgaggt 250 ||||||| |||||||||||| |||||||| | ||||| |||| |||||||| Sbjct: 202 gcagacaagggccattgtgtgttgtacaccactgatggggcacgcttcgaggt 254
>ref|NM_001070372.1| Oryza sativa (japonica cultivar-group) Os09g0545700 (Os09g0545700) mRNA, complete cds Length = 586 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 330 ggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattagg 389 ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||| |||| Sbjct: 354 ggcaggatcacgttgccgtgcgatgcgtcggtgatggagtacgtcatgtgcttgcttagc 413 Query: 390 agagaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||||||||||||||||||| ||||||| |||||||||| | |||||| Sbjct: 414 agagatgcctctgaagaggtcgagagggcgttcttgagctccatggcgaggcc 466 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| || | ||||||||||| |||||| | ||||| ||||| Sbjct: 240 gtgtacaccgccgacggcgcgcggttcgaggtgccattgccgtacctaggcac 292 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 97 caaagaagctggctcaactggctaagaagttgcaga 132 |||||||||| ||||| |||| ||||||||||||| Sbjct: 100 caaagaagcttgctcagttggccaagaagttgcaga 135
>dbj|AK062898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E11, full insert sequence Length = 586 Score = 113 bits (57), Expect = 7e-22 Identities = 99/113 (87%) Strand = Plus / Plus Query: 330 ggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattagg 389 ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||| |||| Sbjct: 354 ggcaggatcacgttgccgtgcgatgcgtcggtgatggagtacgtcatgtgcttgcttagc 413 Query: 390 agagaggcctctgaagaggtcgagaaggcgttcctgagctccatagtgaggcc 442 ||||| ||||||||||||||||||| ||||||| |||||||||| | |||||| Sbjct: 414 agagatgcctctgaagaggtcgagagggcgttcttgagctccatggcgaggcc 466 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| || | ||||||||||| |||||| | ||||| ||||| Sbjct: 240 gtgtacaccgccgacggcgcgcggttcgaggtgccattgccgtacctaggcac 292 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 97 caaagaagctggctcaactggctaagaagttgcaga 132 |||||||||| ||||| |||| ||||||||||||| Sbjct: 100 caaagaagcttgctcagttggccaagaagttgcaga 135
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| | || |||| Sbjct: 81127 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgacgtgcgatg 81186 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||| Sbjct: 81187 catcagtgatagagtacgtcatgtgcttgattagcagagatgcctctgaagaggttgaga 81246 Query: 415 aggcgttcctgagctccat 433 ||||||| |||||||||| Sbjct: 81247 gggcgttcttgagctccat 81265
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| | || |||| Sbjct: 89830 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgacgtgcgatg 89889 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||| Sbjct: 89890 catcagtgatagagtacgtcatgtgcttgattagcagagatgcctctgaagaggttgaga 89949 Query: 415 aggcgttcctgagctccat 433 ||||||| |||||||||| Sbjct: 89950 gggcgttcttgagctccat 89968
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| | || |||| Sbjct: 3333167 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgacgtgcgatg 3333108 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||| Sbjct: 3333107 catcagtgatagagtacgtcatgtgcttgattagcagagatgcctctgaagaggttgaga 3333048 Query: 415 aggcgttcctgagctccat 433 ||||||| |||||||||| Sbjct: 3333047 gggcgttcttgagctccat 3333029
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| || |||| Sbjct: 28986487 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgatgtgcgatg 28986546 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 28986547 catcagtgatggagtacgtcatgtgcttgattagcagagatgcctctgaagaggtcgaga 28986606 Query: 415 aggcgttcctgagctccat 433 || |||| |||||||||| Sbjct: 28986607 gggtgttcttgagctccat 28986625 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| | |||||| |||||||||| | || |||||| |||||||| || Sbjct: 22212233 cggttcaaggtgctattggcgtaccttggcatagcggtcttcagtgagctcctcgccatg 22212292 Query: 300 tctcaagaggagtttggcttc 320 |||||| |||||||||||||| Sbjct: 22212293 tctcaaaaggagtttggcttc 22212313
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| | || |||| Sbjct: 29772969 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgacgtgcgatg 29772910 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||| ||||| || ||||| |||||||| ||||| |||||||||||||| |||| Sbjct: 29772909 catcagtgatagagtacgtcatgtgcttgattagcagagatgcctctgaagaggttgaga 29772850 Query: 415 aggcgttcctgagctccat 433 ||||||| |||||||||| Sbjct: 29772849 gggcgttcttgagctccat 29772831 Score = 103 bits (52), Expect = 7e-19 Identities = 174/214 (81%), Gaps = 3/214 (1%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcacaatggcc 278 |||||||||||||| || | ||||||||||| ||||||| |||||||||| |||| | Sbjct: 10027881 gtgtacaccgccgacggggcgcggttcgaggtgccattggtgtaccttggcatgatggtc 10027940 Query: 279 ttcagagagctcctacgggtgtctcaagaggagtttggcttc---agctgtgatggcagg 335 ||| | |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 10027941 ttcggcgagctcctcgccatgtctcaagaggagtttggcttcgccagcgacgatggcagg 10028000 Query: 336 atcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagag 395 ||||| ||| | || ||||| | ||||||||||| || ||||| |||||||| | ||| Sbjct: 10028001 atcacattgacgtgcgatgcgttggtgatggagtacgtcatgtgcttgattagcatagat 10028060 Query: 396 gcctctgaagaggtcgagaaggcgttcctgagct 429 |||||||||||||| |||| || |||| |||||| Sbjct: 10028061 gcctctgaagaggttgagagggtgttcttgagct 10028094 Score = 85.7 bits (43), Expect = 2e-13 Identities = 159/197 (80%), Gaps = 3/197 (1%) Strand = Plus / Minus Query: 221 gtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcacaatggcctt 280 |||||||||||| || | ||||| ||||| ||||||| ||||||||||| |||| | | Sbjct: 14272419 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 14272360 Query: 281 cagagagctcctacgggtgtctcaagaggagtttggctt---cagctgtgatggcaggat 337 | | |||||||| |||||||||||||||||||||| | || ||||||||||| Sbjct: 14272359 cggcgagctcctcgtcatgtctcaagaggagtttggctttgccggcgacgatggcaggat 14272300 Query: 338 cacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggc 397 || |||| | || ||||| || ||||||||| | || ||||| |||||||| ||||| || Sbjct: 14272299 catgttgacgtgcgatgcgtcggtgatggagcaagtcatgtgcttgattagcagagatgc 14272240 Query: 398 ctctgaagaggtcgaga 414 |||||||||||| |||| Sbjct: 14272239 ctctgaagaggttgaga 14272223 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gtacatgtttttgttcagtt 531 |||||||||||||||||||| Sbjct: 21160479 gtacatgtttttgttcagtt 21160498
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| || |||| Sbjct: 1474 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgatgtgcgatg 1533 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 1534 catcagtgatggagtacgtcatgtgcttgattagcagagatgcctctgaagaggtcgaga 1593 Query: 415 aggcgttcctgagctccat 433 || |||| |||||||||| Sbjct: 1594 gggtgttcttgagctccat 1612
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 298 tgtctcaagaggagtttggcttcagctg---tgatggcaggatcacgttgccctgtgatg 354 ||||||||||||| ||||||||| | | ||||||||||||||||||| || |||| Sbjct: 136531 tgtctcaagaggaatttggcttcgccggcgatgatggcaggatcacgttgatgtgcgatg 136590 Query: 355 cctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgaga 414 | || ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 136591 catcagtgatggagtacgtcatgtgcttgattagcagagatgcctctgaagaggtcgaga 136650 Query: 415 aggcgttcctgagctccat 433 || |||| |||||||||| Sbjct: 136651 gggtgttcttgagctccat 136669
>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone OSJNBb0027B12, from chromosome 3, complete sequence Length = 127426 Score = 103 bits (52), Expect = 7e-19 Identities = 174/214 (81%), Gaps = 3/214 (1%) Strand = Plus / Plus Query: 219 gtgtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcacaatggcc 278 |||||||||||||| || | ||||||||||| ||||||| |||||||||| |||| | Sbjct: 79676 gtgtacaccgccgacggggcgcggttcgaggtgccattggtgtaccttggcatgatggtc 79735 Query: 279 ttcagagagctcctacgggtgtctcaagaggagtttggcttc---agctgtgatggcagg 335 ||| | |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 79736 ttcggcgagctcctcgccatgtctcaagaggagtttggcttcgccagcgacgatggcagg 79795 Query: 336 atcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagag 395 ||||| ||| | || ||||| | ||||||||||| || ||||| |||||||| | ||| Sbjct: 79796 atcacattgacgtgcgatgcgttggtgatggagtacgtcatgtgcttgattagcatagat 79855 Query: 396 gcctctgaagaggtcgagaaggcgttcctgagct 429 |||||||||||||| |||| || |||| |||||| Sbjct: 79856 gcctctgaagaggttgagagggtgttcttgagct 79889
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 85.7 bits (43), Expect = 2e-13 Identities = 159/197 (80%), Gaps = 3/197 (1%) Strand = Plus / Minus Query: 221 gtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcacaatggcctt 280 |||||||||||| || | ||||| ||||| ||||||| ||||||||||| |||| | | Sbjct: 88832 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 88773 Query: 281 cagagagctcctacgggtgtctcaagaggagtttggctt---cagctgtgatggcaggat 337 | | |||||||| |||||||||||||||||||||| | || ||||||||||| Sbjct: 88772 cggcgagctcctcgtcatgtctcaagaggagtttggctttgccggcgacgatggcaggat 88713 Query: 338 cacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggc 397 || |||| | || ||||| || ||||||||| | || ||||| |||||||| ||||| || Sbjct: 88712 catgttgacgtgcgatgcgtcggtgatggagcaagtcatgtgcttgattagcagagatgc 88653 Query: 398 ctctgaagaggtcgaga 414 |||||||||||| |||| Sbjct: 88652 ctctgaagaggttgaga 88636
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 85.7 bits (43), Expect = 2e-13 Identities = 159/197 (80%), Gaps = 3/197 (1%) Strand = Plus / Minus Query: 221 gtacaccgccgatggatcacggttcgaggtcccattggcttaccttggcacaatggcctt 280 |||||||||||| || | ||||| ||||| ||||||| ||||||||||| |||| | | Sbjct: 26673 gtacaccgccgacggggcgcggtttgaggtgccattggtgtaccttggcacgatggtcct 26614 Query: 281 cagagagctcctacgggtgtctcaagaggagtttggctt---cagctgtgatggcaggat 337 | | |||||||| |||||||||||||||||||||| | || ||||||||||| Sbjct: 26613 cggcgagctcctcgtcatgtctcaagaggagtttggctttgccggcgacgatggcaggat 26554 Query: 338 cacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggc 397 || |||| | || ||||| || ||||||||| | || ||||| |||||||| ||||| || Sbjct: 26553 catgttgacgtgcgatgcgtcggtgatggagcaagtcatgtgcttgattagcagagatgc 26494 Query: 398 ctctgaagaggtcgaga 414 |||||||||||| |||| Sbjct: 26493 ctctgaagaggttgaga 26477
>emb|CT835911.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA011N17, full insert sequence Length = 760 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||||| || |||| || ||||||||||| |||||| | ||||| |||||||| || Sbjct: 294 gagctcctgaggatgtcacaggaggagtttgggttcagcagcgatggtaggatcacactg 353 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 || || || ||| | |||||||||||||| ||||||||| | ||||||||||||| || Sbjct: 354 ccgtgcgacgccgcggtgatggagtatgtcatgtgtttgctcgggagagaggcctcggag 413 Query: 405 gaggtcgagaaggc 418 ||||| |||||||| Sbjct: 414 gaggttgagaaggc 427
>ref|NM_001068983.1| Oryza sativa (japonica cultivar-group) Os08g0550700 (Os08g0550700) mRNA, complete cds Length = 432 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||||| || |||| || ||||||||||| |||||| | ||||| |||||||| || Sbjct: 214 gagctcctgaggatgtcacaggaggagtttgggttcagcagcgatggtaggatcacactg 273 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 || || || ||| | |||||||||||||| ||||||||| | ||||||||||||| || Sbjct: 274 ccgtgcgacgccgcggtgatggagtatgtcatgtgtttgctcgggagagaggcctcggag 333 Query: 405 gaggtcgagaaggc 418 ||||| |||||||| Sbjct: 334 gaggttgagaaggc 347
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||||| || |||| || ||||||||||| |||||| | ||||| |||||||| || Sbjct: 27615570 gagctcctgaggatgtcacaggaggagtttgggttcagcagcgatggtaggatcacactg 27615511 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 || || || ||| | |||||||||||||| ||||||||| | ||||||||||||| || Sbjct: 27615510 ccgtgcgacgccgcggtgatggagtatgtcatgtgtttgctcgggagagaggcctcggag 27615451 Query: 405 gaggtcgagaaggc 418 ||||| |||||||| Sbjct: 27615450 gaggttgagaaggc 27615437
>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011H15 Length = 130146 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||||| || |||| || ||||||||||| |||||| | ||||| |||||||| || Sbjct: 12914 gagctcctgaggatgtcacaggaggagtttgggttcagcagcgatggtaggatcacactg 12855 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 || || || ||| | |||||||||||||| ||||||||| | ||||||||||||| || Sbjct: 12854 ccgtgcgacgccgcggtgatggagtatgtcatgtgtttgctcgggagagaggcctcggag 12795 Query: 405 gaggtcgagaaggc 418 ||||| |||||||| Sbjct: 12794 gaggttgagaaggc 12781
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 285 gagctcctacgggtgtctcaagaggagtttggcttcagctgtgatggcaggatcacgttg 344 |||||||| || |||| || ||||||||||| |||||| | ||||| |||||||| || Sbjct: 97860 gagctcctgaggatgtcacaggaggagtttgggttcagcagcgatggtaggatcacactg 97801 Query: 345 ccctgtgatgcctctgtgatggagtatgtgatgtgtttgattaggagagaggcctctgaa 404 || || || ||| | |||||||||||||| ||||||||| | ||||||||||||| || Sbjct: 97800 ccgtgcgacgccgcggtgatggagtatgtcatgtgtttgctcgggagagaggcctcggag 97741 Query: 405 gaggtcgagaaggc 418 ||||| |||||||| Sbjct: 97740 gaggttgagaaggc 97727
>ref|NM_001070371.1| Oryza sativa (japonica cultivar-group) Os09g0545400 (Os09g0545400) mRNA, complete cds Length = 1406 Score = 77.8 bits (39), Expect = 4e-11 Identities = 153/191 (80%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| |||||| | ||||| || |||| || |||| | |||||||| || || Sbjct: 475 cggttcaaggtgccattgccgtacctcggaacaacggtcttcggcgagctcctgaggatg 416 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || |||||||| || || ||| | ||||||| |||||||| ||||||||||||| | Sbjct: 415 tcacaagaggaattcgggttcgccggtgatgggaggatcacactgccctgtgatgcggcc 356 Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcg 419 |||||||||||||| ||||| ||| | |||||| | || || || || || |||| |||| Sbjct: 355 gtgatggagtatgtcatgtgcttgctgaggagaaatgcatcggaggatgttgagagggcg 296 Query: 420 ttcctgagctc 430 ||||||||||| Sbjct: 295 ttcctgagctc 285
>dbj|AK064274.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F01, full insert sequence Length = 1406 Score = 77.8 bits (39), Expect = 4e-11 Identities = 153/191 (80%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| |||||| | ||||| || |||| || |||| | |||||||| || || Sbjct: 475 cggttcaaggtgccattgccgtacctcggaacaacggtcttcggcgagctcctgaggatg 416 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || |||||||| || || ||| | ||||||| |||||||| ||||||||||||| | Sbjct: 415 tcacaagaggaattcgggttcgccggtgatgggaggatcacactgccctgtgatgcggcc 356 Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcg 419 |||||||||||||| ||||| ||| | |||||| | || || || || || |||| |||| Sbjct: 355 gtgatggagtatgtcatgtgcttgctgaggagaaatgcatcggaggatgttgagagggcg 296 Query: 420 ttcctgagctc 430 ||||||||||| Sbjct: 295 ttcctgagctc 285
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 77.8 bits (39), Expect = 4e-11 Identities = 153/191 (80%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| |||||| | ||||| || |||| || |||| | |||||||| || || Sbjct: 139102 cggttcaaggtgccattgccgtacctcggaacaacggtcttcggcgagctcctgaggatg 139043 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || |||||||| || || ||| | ||||||| |||||||| ||||||||||||| | Sbjct: 139042 tcacaagaggaattcgggttcgccggtgatgggaggatcacactgccctgtgatgcggcc 138983 Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcg 419 |||||||||||||| ||||| ||| | |||||| | || || || || || |||| |||| Sbjct: 138982 gtgatggagtatgtcatgtgcttgctgaggagaaatgcatcggaggatgttgagagggcg 138923 Query: 420 ttcctgagctc 430 ||||||||||| Sbjct: 138922 ttcctgagctc 138912 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggt 409 |||||||||||||||||||| ||| |||||||| || |||| |||||||| Sbjct: 135405 gtgatggagtatgtgatgtgcttgcttaggagaaagccctcggaagaggt 135356
>emb|CT837633.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA018K20, full insert sequence Length = 674 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||| |||||||||||||| |||||||||||| ||| |||||| || ||||| || || Sbjct: 248 cggtttgaggtcccattggcgtaccttggcacagtggtcttcagtgaactcctgaggatg 307 Query: 300 tctcaagaggagtttggcttca 321 || || |||||||||||||||| Sbjct: 308 tcccaggaggagtttggcttca 329
>ref|NM_001070379.1| Oryza sativa (japonica cultivar-group) Os09g0546800 (Os09g0546800) mRNA, complete cds Length = 426 Score = 69.9 bits (35), Expect = 1e-08 Identities = 152/191 (79%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| || |||||| |||||||| ||| |||| Sbjct: 163 ttcgaggtcccgttggcgtacctcggcacggcggtcttcagtgagctcctccggatgtca 222 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctctgtg 362 || ||||||||||| ||| ||||||||||||| | |||| |||||||| ||||| Sbjct: 223 caggaggagtttggtttctcgatcgatggcaggatcatgctgccttgtgatgctgctgtg 282 Query: 363 atggagtatgtgatgtgtttgattaggagagaggcctctgaagaggtcgagaaggcgttc 422 |||||||||| ||||| ||| | |||||| | || || | ||||| ||||| || || Sbjct: 283 atggagtatgccatgtgcttgctcaggagaaatgcttcggttgaggtggagaaagcattg 342 Query: 423 ctgagctccat 433 ||||||||||| Sbjct: 343 ctgagctccat 353
>ref|NM_001070378.1| Oryza sativa (japonica cultivar-group) Os09g0546500 (Os09g0546500) mRNA, complete cds Length = 435 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Plus Query: 261 taccttggcacaatggccttcagagagctcctacgggtgtctcaagaggagtttggcttc 320 ||||| ||||| |||| |||| | |||||||| || |||| || ||||||||||||||| Sbjct: 184 tacctcggcacgatggtcttcggtgagctcctgaggatgtcacaggaggagtttggcttc 243 Query: 321 agctgtgatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgt 380 | ||||||| | |||||| || || ||||||||| ||||||||||| |||||||| Sbjct: 244 acgagtgatggaaagatcacattaccatgtgatgccatggtgatggagtacgtgatgtgc 303 Query: 381 ttgattaggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 || |||| ||| | || || | ||| || |||||||| ||| |||||||||| Sbjct: 304 ttacttagaagaaatgcttcagtagatgttgagaaggcattcttgagctccat 356
>dbj|AK241264.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065132A09, full insert sequence Length = 695 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggt 409 |||||||||||||||||||| ||| |||||||| || |||| |||||||| Sbjct: 422 gtgatggagtatgtgatgtgcttgcttaggagaaagccctcggaagaggt 471
>ref|NM_001070370.1| Oryza sativa (japonica cultivar-group) Os09g0545300 (Os09g0545300) mRNA, complete cds Length = 438 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 360 gtgatggagtatgtgatgtgtttgattaggagagaggcctctgaagaggt 409 |||||||||||||||||||| ||| |||||||| || |||| |||||||| Sbjct: 289 gtgatggagtatgtgatgtgcttgcttaggagaaagccctcggaagaggt 338
>emb|CT836523.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA031B23, full insert sequence Length = 671 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| || |||| Sbjct: 252 ttcgaggtcccgttggcgtacctcggcactgcagtcttcagtgagctcctcaggatgtca 311 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgc 355 || ||||||||||| |||| | ||||||||||||| |||||| |||||||| Sbjct: 312 caggaggagtttggtttcacgagcgatggcaggatcatgttgccttgtgatgc 364 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 108 gctcaactggctaagaagttgcagaggctggtggca 143 ||||||||||| ||||||| ||||||| ||| |||| Sbjct: 111 gctcaactggccaagaagtggcagaggatggcggca 146
>dbj|AK240906.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065036L02, full insert sequence Length = 672 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| || |||| Sbjct: 257 ttcgaggtcccgttggcgtacctcggcactgcagtcttcagtgagctcctcaggatgtca 316 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgc 355 || ||||||||||| |||| | ||||||||||||| |||||| |||||||| Sbjct: 317 caggaggagtttggtttcacgagcgatggcaggatcatgttgccttgtgatgc 369 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 108 gctcaactggctaagaagttgcagaggctggtggca 143 ||||||||||| ||||||| ||||||| ||| |||| Sbjct: 116 gctcaactggccaagaagtggcagaggatggcggca 151
>ref|NM_001070376.1| Oryza sativa (japonica cultivar-group) Os09g0546300 (Os09g0546300) mRNA, complete cds Length = 474 Score = 58.0 bits (29), Expect = 4e-05 Identities = 107/133 (80%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 ||||||||||||||||||| |||||||||| | || ||||| || ||||| || || Sbjct: 160 cggttcgaggtcccattggtgtaccttggcatgagggtcttcattgaactcctgaggatg 219 Query: 300 tctcaagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgcctct 359 || || |||||||||||||||| | |||||||| |||| | |||| |||||||| | Sbjct: 220 tcccaggaggagtttggcttcacgagcgatggcagaatcatgctgccttgtgatgctgca 279 Query: 360 gtgatggagtatg 372 | ||||||||||| Sbjct: 280 gagatggagtatg 292
>ref|NM_001070374.1| Oryza sativa (japonica cultivar-group) Os09g0546100 (Os09g0546100) mRNA, complete cds Length = 426 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 243 ttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtgtct 302 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| || |||| Sbjct: 163 ttcgaggtcccgttggcgtacctcggcactgcagtcttcagtgagctcctcaggatgtca 222 Query: 303 caagaggagtttggcttcagctgtgatggcaggatcacgttgccctgtgatgc 355 || ||||||||||| |||| | ||||||||||||| |||||| |||||||| Sbjct: 223 caggaggagtttggtttcacgagcgatggcaggatcatgttgccttgtgatgc 275 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 108 gctcaactggctaagaagttgcagaggctggtggca 143 ||||||||||| ||||||| ||||||| ||| |||| Sbjct: 22 gctcaactggccaagaagtggcagaggatggcggca 57
>gb|AY111539.1| Zea mays CL12749_1 mRNA sequence Length = 737 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Minus Query: 360 gtgatggagtatgtgatgtgtttg 383 |||||||||||||||||||||||| Sbjct: 395 gtgatggagtatgtgatgtgtttg 372
>ref|NM_001070382.1| Oryza sativa (japonica cultivar-group) Os09g0547100 (Os09g0547100) mRNA, complete cds Length = 682 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 404 agaggtcgagaaggcgttcctgagctccatagtga 438 |||||| |||||||||||| |||||||||| |||| Sbjct: 440 agaggttgagaaggcgttcttgagctccatggtga 474 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 222 tacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 ||||||||||| || | ||||||||||| |||||||| ||||| ||||| Sbjct: 258 tacaccgccgacggcgcgcggttcgaggtgccattggcgtacctcggcac 307
>gb|AC122036.3| Mus musculus BAC clone RP24-420C18 from chromosome 8, complete sequence Length = 209062 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 45 ttcctgagagaaagagcattttaggaa 71 ||||| ||||||||||||||||||||| Sbjct: 62680 ttcctcagagaaagagcattttaggaa 62706
>ref|XM_817361.1| Trypanosoma brucei TREU927 major vault protein (Tb10.70.5840) partial mRNA Length = 2592 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 184 gcaccgcttccgttgcagacagg 206 ||||||||||||||||||||||| Sbjct: 730 gcaccgcttccgttgcagacagg 708
>dbj|AK058556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D04, full insert sequence Length = 685 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 404 agaggtcgagaaggcgttcctgagctccatagtga 438 |||||| |||||||||||| |||||||||| |||| Sbjct: 443 agaggttgagaaggcgttcttgagctccatggtga 477 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 222 tacaccgccgatggatcacggttcgaggtcccattggcttaccttggcac 271 ||||||||||| || | ||||||||||| |||||||| ||||| ||||| Sbjct: 261 tacaccgccgacggcgcgcggttcgaggtgccattggcgtacctcggcac 310
>emb|X79211.1|ZMAUX2 Z.mays (cv. Brio) aux2 mRNA Length = 625 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Plus Query: 327 gatggcaggatcacgttgccctgtgatgcctctgtgatggagtatgtgatgtgtttgatt 386 ||||||||||||||| ||||||| || || | || |||||||| | ||||||||| | Sbjct: 322 gatggcaggatcacgctgccctgcgacgcggcggtcatggagtacgccatgtgtttgctc 381 Query: 387 aggagagaggcctctgaagaggtcgagaaggcgttcctgagctccat 433 ||||||| ||||||| ||| | ||| |||||||||| ||| |||| Sbjct: 382 aggagaggagcctctgccgagctagagcaggcgttccttagcaccat 428
>ref|XM_001019090.1| Tetrahymena thermophila SB210 cation channel family protein (TTHERM_00252390) mRNA, complete cds Length = 5265 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 aacaaggtagcaatctaagcat 38 |||||||||||||||||||||| Sbjct: 704 aacaaggtagcaatctaagcat 725
>ref|XM_001019089.1| Tetrahymena thermophila SB210 cation channel family protein (TTHERM_00252380) mRNA, complete cds Length = 4101 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 17 aacaaggtagcaatctaagcat 38 |||||||||||||||||||||| Sbjct: 2615 aacaaggtagcaatctaagcat 2636
>ref|NM_001070380.1| Oryza sativa (japonica cultivar-group) Os09g0546900 (Os09g0546900) mRNA, complete cds Length = 614 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 284 agagctcctacgggtgtctcaagaggagtttggcttca 321 ||||||||| || ||||||| |||||||||||||||| Sbjct: 288 agagctcctcaggatgtctcaggaggagtttggcttca 325
>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence Length = 261249 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 350 tgatgcctctgtgatggagtatgtga 375 ||||||||||||||||||| |||||| Sbjct: 57349 tgatgcctctgtgatggaggatgtga 57324
>ref|XM_702100.1| PREDICTED: Danio rerio similar to WD repeat domain 34, transcript variant 2 (LOC561119), mRNA Length = 2112 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ctcaagaggagtttggcttcag 322 |||||||||||||||||||||| Sbjct: 1152 ctcaagaggagtttggcttcag 1131
>ref|XM_678652.1| PREDICTED: Danio rerio similar to WD repeat domain 34, transcript variant 1 (LOC561119), mRNA Length = 1914 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ctcaagaggagtttggcttcag 322 |||||||||||||||||||||| Sbjct: 1149 ctcaagaggagtttggcttcag 1128
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 ctgcagcaccgcttccgttgca 200 |||||||||||||||||||||| Sbjct: 2364286 ctgcagcaccgcttccgttgca 2364265
>gb|BC095866.1| Danio rerio cDNA clone IMAGE:7160022 Length = 2151 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ctcaagaggagtttggcttcag 322 |||||||||||||||||||||| Sbjct: 1154 ctcaagaggagtttggcttcag 1133
>dbj|AK062365.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H09, full insert sequence Length = 614 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 284 agagctcctacgggtgtctcaagaggagtttggcttca 321 ||||||||| || ||||||| |||||||||||||||| Sbjct: 288 agagctcctcaggatgtctcaggaggagtttggcttca 325
>gb|AC154121.6| Mus musculus chromosome 1, clone RP24-93A17, complete sequence Length = 228353 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 350 tgatgcctctgtgatggagtatgtga 375 ||||||||||||||||||| |||||| Sbjct: 108113 tgatgcctctgtgatggaggatgtga 108138
>gb|AC140409.3| Mus musculus BAC clone RP23-138K22 from 9, complete sequence Length = 200157 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 359 tgtgatggagtatgtgatgtgt 380 |||||||||||||||||||||| Sbjct: 102066 tgtgatggagtatgtgatgtgt 102087
>ref|XM_528586.2| PREDICTED: Pan troglodytes ubiquitin associated protein 2 (UBAP2), mRNA Length = 4283 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 1428 gctggctcaactggctaagaa 1408
>gb|BC111409.1| Homo sapiens ubiquitin associated protein 2, mRNA (cDNA clone IMAGE:40000983), with apparent retained intron Length = 1893 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 1208 gctggctcaactggctaagaa 1188
>ref|XR_012166.1| PREDICTED: Macaca mulatta similar to ubiquitin associated protein 2 (LOC702271), mRNA Length = 3986 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 1432 gctggctcaactggctaagaa 1412
>gb|AC111654.6| Rattus norvegicus Chr BAC CH230-108G17 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 231706 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 422 cctgagctccatagtgaggccttgc 446 ||||||||||| ||||||||||||| Sbjct: 71812 cctgagctccagagtgaggccttgc 71788
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 ctctgaagaggtcgagaaggcgttc 422 |||| |||||||||||||||||||| Sbjct: 11449 ctctcaagaggtcgagaaggcgttc 11425
>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and partial cds Length = 270752 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 accacagaaccatgattcatccaaa 100 ||||||| ||||||||||||||||| Sbjct: 5047 accacagtaccatgattcatccaaa 5023
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 taggagagaggcctctgaaga 406 ||||||||||||||||||||| Sbjct: 56346 taggagagaggcctctgaaga 56326
>gb|AY358682.1| Homo sapiens clone DNA60611 UBAP2 (UNQ610) mRNA, complete cds Length = 1809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 644 gctggctcaactggctaagaa 624
>ref|NM_018449.2| Homo sapiens ubiquitin associated protein 2 (UBAP2), mRNA Length = 4299 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 1434 gctggctcaactggctaagaa 1414
>emb|AL591624.6| Human DNA sequence from clone RP11-143A22 on chromosome 6 Contains a novel gene and a CpG island, complete sequence Length = 146887 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gaagctggctcaactggctaa 121 ||||||||||||||||||||| Sbjct: 44084 gaagctggctcaactggctaa 44104
>emb|AL445250.4| Human DNA sequence from clone RP11-199A24 on chromosome 6 Contains a CpG island, complete sequence Length = 178384 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gaagctggctcaactggctaa 121 ||||||||||||||||||||| Sbjct: 170820 gaagctggctcaactggctaa 170800
>emb|AL365332.9| Human DNA sequence from clone RP11-212L9 on chromosome 1 Contains part of the RYR2 gene for ryanodine receptor 2 (cardiac) and a CpG island, complete sequence Length = 166307 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 gagcattttaggaagaacaccacag 82 ||||||||||||||||| ||||||| Sbjct: 20148 gagcattttaggaagaaaaccacag 20124
>emb|AL139113.21| Human DNA sequence from clone RP11-176F3 on chromosome 9 Contains the 3' end of the PRSS3 gene for serine protease 3 (mesotrypsin) (MTG, TRY3, TRY4, PRSS4), the 5' end of a novel gene, two novel pseudogenes, a DC2 protein pseudogene, the UBC3B gene for ubiquitin-conjugating enzyme, two novel genes, the 3' end of a novel gene (KIAA1491, FLJ22435, FLJ21704, FLJ22148, FLJ33002) and a CpG island, complete sequence Length = 193280 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 147892 gctggctcaactggctaagaa 147912
>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence Length = 86973 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 gagagaggcctctgaagaggt 409 ||||||||||||||||||||| Sbjct: 71064 gagagaggcctctgaagaggt 71044
>gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, complete sequence Length = 147101 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 accacagaaccatgattcatccaaa 100 ||||||| ||||||||||||||||| Sbjct: 100996 accacagtaccatgattcatccaaa 100972
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 42.1 bits (21), Expect = 2.2 Identities = 66/81 (81%) Strand = Plus / Plus Query: 240 cggttcgaggtcccattggcttaccttggcacaatggccttcagagagctcctacgggtg 299 |||||| |||| | |||||| |||||||||| | || |||||| |||||||| || Sbjct: 129532 cggttcaaggtgctattggcgtaccttggcatagcggtcttcagtgagctcctcgccatg 129591 Query: 300 tctcaagaggagtttggcttc 320 |||||| |||||||||||||| Sbjct: 129592 tctcaaaaggagtttggcttc 129612
>dbj|AK026088.1| Homo sapiens cDNA: FLJ22435 fis, clone HRC09181 Length = 3302 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 602 gctggctcaactggctaagaa 582
>dbj|AK025801.1| Homo sapiens cDNA: FLJ22148 fis, clone HEP22268 Length = 2863 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 324 gctggctcaactggctaagaa 304
>emb|BX470224.5| Zebrafish DNA sequence from clone DKEY-13N15 in linkage group 5, complete sequence Length = 244492 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 tgtgtttgattaggagagagg 396 ||||||||||||||||||||| Sbjct: 237264 tgtgtttgattaggagagagg 237284
>gb|BC111762.1| Homo sapiens ubiquitin associated protein 2, mRNA (cDNA clone IMAGE:40011328), partial cds Length = 1489 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 804 gctggctcaactggctaagaa 784
>dbj|AP005378.3| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-320F3, complete sequence Length = 41856 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 agaaagagcattttaggaaga 73 ||||||||||||||||||||| Sbjct: 16853 agaaagagcattttaggaaga 16833
>dbj|AP005140.4| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-65A1, complete sequence Length = 112601 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 agaaagagcattttaggaaga 73 ||||||||||||||||||||| Sbjct: 101587 agaaagagcattttaggaaga 101567
>dbj|AB040924.1| Homo sapiens mRNA for KIAA1491 protein, partial cds Length = 2920 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gctggctcaactggctaagaa 124 ||||||||||||||||||||| Sbjct: 236 gctggctcaactggctaagaa 216
>emb|CR855164.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence Length = 111824 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 96 ccaaagaagctggctcaactggctaagaagttgcag 131 |||| |||||| ||||| ||||||||||||||||| Sbjct: 101933 ccaatgaagcttgctcagttggctaagaagttgcag 101898
>ref|NM_001070373.1| Oryza sativa (japonica cultivar-group) Os09g0546000 (Os09g0546000) mRNA, complete cds Length = 435 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 220 tgtacaccgccgatggatcacggttcgaggtcccattggc 259 |||||||||||||||| |||||||||||||| ||||| Sbjct: 143 tgtacaccgccgatgggaggcggttcgaggtcccgttggc 182
>gb|AC188068.1| Callithrix jacchus chromosome UNK clone CH259-97H12, complete sequence Length = 205410 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 62140 aggagagaggcctctgaaga 62121
>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence Length = 219218 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggcctctgaagaggtcgagaaggc 418 ||||||||||||||||| |||||| Sbjct: 136992 ggcctctgaagaggtcgggaaggc 136969
>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence Length = 206735 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 ggcctctgaagaggtcgagaaggc 418 ||||||||||||||||| |||||| Sbjct: 136467 ggcctctgaagaggtcgggaaggc 136490
>gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 204000 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 cctgagctccatagtgaggccttg 445 |||| ||||||||||||||||||| Sbjct: 172125 cctgggctccatagtgaggccttg 172102
>gb|AC162281.3| Mus musculus chromosome 1, clone RP24-398O5, complete sequence Length = 162097 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 agaggctggtggcagctggt 149 |||||||||||||||||||| Sbjct: 74205 agaggctggtggcagctggt 74186
>gb|AC099415.4| Mus musculus BAC clone RP23-122D8 from chromosome 8, complete sequence Length = 215488 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tgcctctgtgatggagtatg 372 |||||||||||||||||||| Sbjct: 90507 tgcctctgtgatggagtatg 90488
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence Length = 170866 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ctggtggccaggagactgca 164 |||||||||||||||||||| Sbjct: 154286 ctggtggccaggagactgca 154305
>gb|AC163021.5| Mus musculus chromosome 15, clone RP23-228E13, complete sequence Length = 215165 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 atcagcaattttctgtttgt 503 |||||||||||||||||||| Sbjct: 969 atcagcaattttctgtttgt 950
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 gtacatgtttttgttcagtt 531 |||||||||||||||||||| Sbjct: 23365 gtacatgtttttgttcagtt 23384
>gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complete sequence Length = 192026 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aggtagcaatctaagcatca 40 |||||||||||||||||||| Sbjct: 80835 aggtagcaatctaagcatca 80816
>gb|AC133899.9| Mus musculus chromosome 15, clone RP24-511H11, complete sequence Length = 185808 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 atcagcaattttctgtttgt 503 |||||||||||||||||||| Sbjct: 176578 atcagcaattttctgtttgt 176597
>gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, complete sequence Length = 204292 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 atcagcaattttctgtttgt 503 |||||||||||||||||||| Sbjct: 85081 atcagcaattttctgtttgt 85062
>gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome 13, complete sequence Length = 205903 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ctggtggccaggagactgca 164 |||||||||||||||||||| Sbjct: 142046 ctggtggccaggagactgca 142027
>gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, complete sequence Length = 172143 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aggtagcaatctaagcatca 40 |||||||||||||||||||| Sbjct: 166408 aggtagcaatctaagcatca 166427
>gb|AC136191.5| Rattus norvegicus BAC CH230-52I17 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 221923 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ctggctaagaagttgcagag 133 |||||||||||||||||||| Sbjct: 112826 ctggctaagaagttgcagag 112845
>gb|AC107462.5| Homo sapiens BAC clone RP11-338B9 from 4, complete sequence Length = 192173 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 64641 aggagagaggcctctgaaga 64622
>gb|AC074045.23| Homo sapiens Xp BAC RP11-60N3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162381 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagagaaagagcattttagg 69 |||||||||||||||||||| Sbjct: 153618 gagagaaagagcattttagg 153599
>gb|AC091784.8| Genomic sequence for Mus musculus, clone RP23-213D23, complete sequence Length = 215410 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 ctgagctccatagtgaggccttgc 446 ||||||||||||||||| |||||| Sbjct: 201314 ctgagctccatagtgagaccttgc 201291
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 96 ccaaagaagctggctcaactggctaagaagttgcag 131 |||| |||||| ||||| ||||||||||||||||| Sbjct: 22855609 ccaatgaagcttgctcagttggctaagaagttgcag 22855574
>emb|AL603766.4| Human DNA sequence from clone RP11-365H23 on chromosome 6 Contains a small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene, complete sequence Length = 80539 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 16591 aggagagaggcctctgaaga 16610
>emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chromosome 9 Contains a survival of motor neuron 1, telomeric (SMN1) pseudogene and the 3' end of the MLLT3 gene for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9), complete sequence Length = 178631 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 123409 aggagagaggcctctgaaga 123390
>emb|AL359077.10| Human DNA sequence from clone RP11-176B4 on chromosome 9 Contains part of a novel protein similar to coactivator-associated arginine methyltransferase-1 (CARM1), complete sequence Length = 182506 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 33672 aggagagaggcctctgaaga 33691
>emb|AL354984.17| Human DNA sequence from clone RP13-379L11 on chromosome 20 Contains a putative novel gene, ESTs, STSs and GSSs, complete sequence Length = 207694 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 102273 aggagagaggcctctgaaga 102292
>emb|AL354660.9| Human DNA sequence from clone RP11-365P10 on chromosome 10, complete sequence Length = 31565 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggagagaggcctctgaaga 406 |||||||||||||||||||| Sbjct: 7818 aggagagaggcctctgaaga 7799
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 96 ccaaagaagctggctcaactggctaagaagttgcag 131 |||| |||||| ||||| ||||||||||||||||| Sbjct: 64384 ccaatgaagcttgctcagttggctaagaagttgcag 64349
>gb|AC155833.10| Mus musculus 10 BAC RP24-405O10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176338 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gagtttggcttcagctgtga 328 |||||||||||||||||||| Sbjct: 144583 gagtttggcttcagctgtga 144602
>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence Length = 190341 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 agctggattttatcagcaat 492 |||||||||||||||||||| Sbjct: 83945 agctggattttatcagcaat 83964
>gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosome 14, complete sequence Length = 195391 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttttgttcagttagatgtca 539 |||||||||||||||||||| Sbjct: 34430 ttttgttcagttagatgtca 34411
>emb|BX530721.14| Zebrafish DNA sequence from clone CH211-195B13 in linkage group 19, complete sequence Length = 201156 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 attttctgtttgtagctagt 510 |||||||||||||||||||| Sbjct: 124279 attttctgtttgtagctagt 124298 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 attttctgtttgtagctagt 510 |||||||||||||||||||| Sbjct: 145285 attttctgtttgtagctagt 145304
>emb|BX890597.13| Zebrafish DNA sequence from clone DKEY-65F8, complete sequence Length = 244779 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gcagaggctggtggcagctg 147 |||||||||||||||||||| Sbjct: 151204 gcagaggctggtggcagctg 151223
>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1, complete sequence Length = 209946 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 atcagctggattttatcagc 489 |||||||||||||||||||| Sbjct: 26423 atcagctggattttatcagc 26442
>dbj|AK071560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101E08, full insert sequence Length = 1567 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 240 cggttcgaggtcccattggcttaccttggcac 271 |||||||||||||| ||| | ||||||||||| Sbjct: 582 cggttcgaggtcccgttgacgtaccttggcac 551
>gb|AF081840.1|AF081840 Clinostomus elongatus 12S ribosomal RNA gene, complete sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, complete sequence; mitochondrial genes for mitochondrial products Length = 2714 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aaatgcaacaaagataccta 576 |||||||||||||||||||| Sbjct: 865 aaatgcaacaaagataccta 884
>emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1029J19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 207774 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ccctgtgatgcctctgtgat 364 |||||||||||||||||||| Sbjct: 77570 ccctgtgatgcctctgtgat 77589
>emb|AL671299.18| Mouse DNA sequence from clone RP23-281K21 on chromosome X, complete sequence Length = 214997 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 ctgagctccatagtgaggccttgc 446 ||||||||||||||||| |||||| Sbjct: 164424 ctgagctccatagtgagaccttgc 164447
>emb|CR931938.9| Zebrafish DNA sequence from clone DKEY-115J2 in linkage group 1, complete sequence Length = 86064 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 atcagctggattttatcagc 489 |||||||||||||||||||| Sbjct: 49435 atcagctggattttatcagc 49416
>gb|AF023201.1|AF023201 Snyderichthys copei 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, complete sequence Length = 956 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aaatgcaacaaagataccta 576 |||||||||||||||||||| Sbjct: 866 aaatgcaacaaagataccta 885
>emb|AL627409.9| Mouse DNA sequence from clone RP23-430L23 on chromosome X, complete sequence Length = 189295 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 tcagctggattttatcagca 490 |||||||||||||||||||| Sbjct: 22234 tcagctggattttatcagca 22253
>emb|AL928582.5| Mouse DNA sequence from clone RP23-235B20 on chromosome X, complete sequence Length = 94729 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cctgtgatgcctctgtgatg 365 |||||||||||||||||||| Sbjct: 36938 cctgtgatgcctctgtgatg 36957 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 112,190,142 Number of extensions: 6066139 Number of successful extensions: 129325 Number of sequences better than 10.0: 114 Number of HSP's gapped: 129305 Number of HSP's successfully gapped: 198 Length of query: 598 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 576 Effective length of database: 18,508,616,841 Effective search space: 10660963300416 Effective search space used: 10660963300416 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
