ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf75a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL157771.11| Human DNA sequence from clone RP11-67J18 on chr... 46 0.28
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.1
3emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111... 44 1.1
4emb|CR847893.16| Zebrafish DNA sequence from clone CH211-242E19,... 42 4.4
5gb|AC188123.1| Trichinella spiralis chromosome UNK clone TS195-5... 42 4.4
6gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complet... 42 4.4
7emb|BX927336.18| Zebrafish DNA sequence from clone CH211-215P11 ... 42 4.4
8ref|XM_809308.1| Trypanosoma cruzi strain CL Brener ATP-dependen... 42 4.4
9emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 42 4.4
10emb|BX649303.18| Zebrafish DNA sequence from clone CH211-266C8 i... 42 4.4
11emb|BX649308.13| Zebrafish DNA sequence from clone CH211-223K15 ... 42 4.4
12emb|BX640461.7| Zebrafish DNA sequence from clone CH211-227E10 i... 42 4.4
13emb|BX936362.13| Zebrafish DNA sequence from clone DKEY-190J3 in... 42 4.4
14emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 i... 42 4.4
15emb|BX664606.17| Zebrafish DNA sequence from clone CH211-171L17 ... 42 4.4
16emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20,... 42 4.4
17gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 4.4

>emb|AL157771.11| Human DNA sequence from clone RP11-67J18 on chromosome 13 Contains the
             5' end of a novel gene (including KIAA0865), possible
             ortholog of rat myosin heavy chain Myr 8 (Loc192253),
             complete sequence
          Length = 115243
 Score = 46.1 bits (23), Expect = 0.28
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 845   ctatgagaaagaagaagaactgg 867
             |||||||||||||||||||||||
Sbjct: 75795 ctatgagaaagaagaagaactgg 75817



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 415     agtcttttccaaaatccgtcgt 436
               ||||||||||||||||||||||
Sbjct: 9607114 agtcttttccaaaatccgtcgt 9607135



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>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 165137

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 415   agtcttttccaaaatccgtcgt 436
             ||||||||||||||||||||||
Sbjct: 70425 agtcttttccaaaatccgtcgt 70446



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>emb|CR847893.16| Zebrafish DNA sequence from clone CH211-242E19, complete sequence
          Length = 165668

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 15766 tgagaaagaagaagaactggg 15786



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>gb|AC188123.1| Trichinella spiralis chromosome UNK clone TS195-50H12, complete sequence
          Length = 174130

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1053   tctgttgatttgttgatagagcgcc 1077
              |||||| ||||||||||||||||||
Sbjct: 107981 tctgttaatttgttgatagagcgcc 108005



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>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1107   aaatttaatgcaatttgaatt 1127
              |||||||||||||||||||||
Sbjct: 100003 aaatttaatgcaatttgaatt 100023



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>emb|BX927336.18| Zebrafish DNA sequence from clone CH211-215P11 in linkage group 5,
             complete sequence
          Length = 200686

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 53670 tgagaaagaagaagaactggg 53650



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>ref|XM_809308.1| Trypanosoma cruzi strain CL Brener ATP-dependent RNA helicase
            (Tc00.1047053511755.60) partial mRNA
          Length = 6723

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 422  tccaaaatccgtcgtatcatg 442
            |||||||||||||||||||||
Sbjct: 2042 tccaaaatccgtcgtatcatg 2022



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 848    tgagaaagaagaagaactggg 868
              |||||||||||||||||||||
Sbjct: 217812 tgagaaagaagaagaactggg 217832



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>emb|BX649303.18| Zebrafish DNA sequence from clone CH211-266C8 in linkage group 4,
             complete sequence
          Length = 65932

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 63517 tgagaaagaagaagaactggg 63537



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>emb|BX649308.13| Zebrafish DNA sequence from clone CH211-223K15 in linkage group 11,
              complete sequence
          Length = 179056

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 848    tgagaaagaagaagaactggg 868
              |||||||||||||||||||||
Sbjct: 109393 tgagaaagaagaagaactggg 109413



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>emb|BX640461.7| Zebrafish DNA sequence from clone CH211-227E10 in linkage group 4,
             complete sequence
          Length = 190826

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 54896 tgagaaagaagaagaactggg 54876



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>emb|BX936362.13| Zebrafish DNA sequence from clone DKEY-190J3 in linkage group 22,
             complete sequence
          Length = 164857

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 17025 tgagaaagaagaagaactggg 17045



 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 848   tgagaaagaagaagaactggg 868
             |||||||||||||||||||||
Sbjct: 69661 tgagaaagaagaagaactggg 69641



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>emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 in linkage group 2,
             complete sequence
          Length = 154030

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 780   ggacagtgtggagaagagcga 800
             |||||||||||||||||||||
Sbjct: 77063 ggacagtgtggagaagagcga 77043



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>emb|BX664606.17| Zebrafish DNA sequence from clone CH211-171L17 in linkage group 22,
              complete sequence
          Length = 181178

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 848    tgagaaagaagaagaactggg 868
              |||||||||||||||||||||
Sbjct: 158467 tgagaaagaagaagaactggg 158487



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>emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20, complete sequence
          Length = 198777

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 848    tgagaaagaagaagaactggg 868
              |||||||||||||||||||||
Sbjct: 171004 tgagaaagaagaagaactggg 170984



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 273     agcttgttctcgtgggacatc 293
               |||||||||||||||||||||
Sbjct: 3484650 agcttgttctcgtgggacatc 3484630


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 180,715,523
Number of extensions: 9556181
Number of successful extensions: 158544
Number of sequences better than 10.0: 17
Number of HSP's gapped: 158544
Number of HSP's successfully gapped: 18
Length of query: 1162
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1139
Effective length of database: 18,503,978,556
Effective search space: 21076031575284
Effective search space used: 21076031575284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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