| Clone Name | FLbaf74m01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245074.1| Zea mays clone 12713 mRNA sequence Length = 609 Score = 182 bits (92), Expect = 1e-42 Identities = 311/384 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||||||||||||| | || |||||||||||||||||| || ||||| || |||||| Sbjct: 32 gattttcttgaaccaactgtactcttagatgagacacattaccaggaggggtacagaaat 91 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || || ||||||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 92 ggctacaatgatggtttggcatctggaaaggaagaggggaggcaggttggtttaaagatg 151 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||||||||| || ||||||||||| |||| ||| ||||| |||||||||||| ||| Sbjct: 152 ggtttccaggtcggtgaagaactgggtttctttcacggctgtctggatgtgtggacgtct 211 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 ||||| | | ||||| |||| ||| ||||||| || ||||| | || |||||||| Sbjct: 212 gcaattctcattgatcagaatgccttcacagctcgggtcaggaagaatattgagcaactg 271 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| ||| ||| |||||| |||| ||||| ||| |||| || |||||| | || Sbjct: 272 gctgcactggtgggcagctatccgctgtccgatccggagaatgaacaaattcaagacgtg 331 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| ||||||||||||| || ||||| | ||||||||| | || || | | Sbjct: 332 atggagaagataaggctgaaattcagggtcatcactgcaagcttaggggtgaagttagag 391 Query: 463 tatgaaggtcgccccacatcatct 486 |||||||| | ||||| ||||||| Sbjct: 392 tatgaagggcaccccaaatcatct 415
>emb|CT831320.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI023G17, full insert sequence Length = 1011 Score = 176 bits (89), Expect = 8e-41 Identities = 335/417 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||| ||||||||| || || ||||||||||||||| ||||| ||||| | ||| Sbjct: 350 gatttccttgaaccatcagtactcttagatgagacacactatcaaacgggtttcaagaat 409 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || ||| ||| ||| |||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 410 ggttatagtgagggcttggtgtctggaaaagaagagggaaggcaggttggtttaaagaat 469 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||| |||||||| |||||||| || || |||||||| || ||||||| |||| ||| Sbjct: 470 ggttttcaggtaggtgaagaactaggtttttatcagggatgtctggatgtttggacgtcg 529 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 | || | ||||||||||||||||||||||| || |||||| |||| ||||||||| Sbjct: 530 ttggtttcaattgatcaagatgcattctcagctcgggtcaggaaaaacattgagcaacta 589 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| |||| | |||||| ||||| | ||||| || ||||| |||||| || Sbjct: 590 gctgcactgttgagaagctatccgttgtcgaacccagaagacgagcaagttcaagatata 649 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||| | Sbjct: 650 atggagaagataagactgaaattcagggttatcacagcaagtttaggtacaaaactggag 709 Query: 463 tatgaaggtcgccccacatcatctgagcaagacattgaggatatgtagcttgtttag 519 ||| |||||||||| |||||||| |||| || |||||||| |||| || |||||| Sbjct: 710 tatcaaggtcgccctacatcatccaagcaggatgttgaggatctgtaactagtttag 766
>ref|NM_001066381.1| Oryza sativa (japonica cultivar-group) Os07g0530300 (Os07g0530300) mRNA, complete cds Length = 1043 Score = 176 bits (89), Expect = 8e-41 Identities = 335/417 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||| ||||||||| || || ||||||||||||||| ||||| ||||| | ||| Sbjct: 416 gatttccttgaaccatcagtactcttagatgagacacactatcaaacgggtttcaagaat 475 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || ||| ||| ||| |||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 476 ggttatagtgagggcttggtgtctggaaaagaagagggaaggcaggttggtttaaagaat 535 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||| |||||||| |||||||| || || |||||||| || ||||||| |||| ||| Sbjct: 536 ggttttcaggtaggtgaagaactaggtttttatcagggatgtctggatgtttggacgtcg 595 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 | || | ||||||||||||||||||||||| || |||||| |||| ||||||||| Sbjct: 596 ttggtttcaattgatcaagatgcattctcagctcgggtcaggaaaaacattgagcaacta 655 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| |||| | |||||| ||||| | ||||| || ||||| |||||| || Sbjct: 656 gctgcactgttgagaagctatccgttgtcgaacccagaagacgagcaagttcaagatata 715 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||| | Sbjct: 716 atggagaagataagactgaaattcagggttatcacagcaagtttaggtacaaaactggag 775 Query: 463 tatgaaggtcgccccacatcatctgagcaagacattgaggatatgtagcttgtttag 519 ||| |||||||||| |||||||| |||| || |||||||| |||| || |||||| Sbjct: 776 tatcaaggtcgccctacatcatccaagcaggatgttgaggatctgtaactagtttag 832
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 176 bits (89), Expect = 8e-41 Identities = 335/417 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||| ||||||||| || || ||||||||||||||| ||||| ||||| | ||| Sbjct: 20697520 gatttccttgaaccatcagtactcttagatgagacacactatcaaacgggtttcaagaat 20697579 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || ||| ||| ||| |||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 20697580 ggttatagtgagggcttggtgtctggaaaagaagagggaaggcaggttggtttaaagaat 20697639 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||| |||||||| |||||||| || || |||||||| || ||||||| |||| ||| Sbjct: 20697640 ggttttcaggtaggtgaagaactaggtttttatcagggatgtctggatgtttggacgtcg 20697699 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 | || | ||||||||||||||||||||||| || |||||| |||| ||||||||| Sbjct: 20697700 ttggtttcaattgatcaagatgcattctcagctcgggtcaggaaaaacattgagcaacta 20697759 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| |||| | |||||| ||||| | ||||| || ||||| |||||| || Sbjct: 20697760 gctgcactgttgagaagctatccgttgtcgaacccagaagacgagcaagttcaagatata 20697819 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||| | Sbjct: 20697820 atggagaagataagactgaaattcagggttatcacagcaagtttaggtacaaaactggag 20697879 Query: 463 tatgaaggtcgccccacatcatctgagcaagacattgaggatatgtagcttgtttag 519 ||| |||||||||| |||||||| |||| || |||||||| |||| || |||||| Sbjct: 20697880 tatcaaggtcgccctacatcatccaagcaggatgttgaggatctgtaactagtttag 20697936
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 176 bits (89), Expect = 8e-41 Identities = 335/417 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||| ||||||||| || || ||||||||||||||| ||||| ||||| | ||| Sbjct: 50270 gatttccttgaaccatcagtactcttagatgagacacactatcaaacgggtttcaagaat 50329 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || ||| ||| ||| |||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 50330 ggttatagtgagggcttggtgtctggaaaagaagagggaaggcaggttggtttaaagaat 50389 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||| |||||||| |||||||| || || |||||||| || ||||||| |||| ||| Sbjct: 50390 ggttttcaggtaggtgaagaactaggtttttatcagggatgtctggatgtttggacgtcg 50449 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 | || | ||||||||||||||||||||||| || |||||| |||| ||||||||| Sbjct: 50450 ttggtttcaattgatcaagatgcattctcagctcgggtcaggaaaaacattgagcaacta 50509 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| |||| | |||||| ||||| | ||||| || ||||| |||||| || Sbjct: 50510 gctgcactgttgagaagctatccgttgtcgaacccagaagacgagcaagttcaagatata 50569 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||| | Sbjct: 50570 atggagaagataagactgaaattcagggttatcacagcaagtttaggtacaaaactggag 50629 Query: 463 tatgaaggtcgccccacatcatctgagcaagacattgaggatatgtagcttgtttag 519 ||| |||||||||| |||||||| |||| || |||||||| |||| || |||||| Sbjct: 50630 tatcaaggtcgccctacatcatccaagcaggatgttgaggatctgtaactagtttag 50686
>dbj|AK109327.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H10, full insert sequence Length = 1043 Score = 176 bits (89), Expect = 8e-41 Identities = 335/417 (80%) Strand = Plus / Plus Query: 103 gattttcttgaaccagcattagccttagatgagacacattatcacgagggttatagaaat 162 ||||| ||||||||| || || ||||||||||||||| ||||| ||||| | ||| Sbjct: 416 gatttccttgaaccatcagtactcttagatgagacacactatcaaacgggtttcaagaat 475 Query: 163 gggtatgatgatggcctggtatctggaaaggaagaggggaggcaggttggcttaaagaat 222 || ||| ||| ||| |||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 476 ggttatagtgagggcttggtgtctggaaaagaagagggaaggcaggttggtttaaagaat 535 Query: 223 ggtttccaggtaggcgaagaactgggattctatcagggctgcttggatgtgtggatgtca 282 ||||| |||||||| |||||||| || || |||||||| || ||||||| |||| ||| Sbjct: 536 ggttttcaggtaggtgaagaactaggtttttatcagggatgtctggatgtttggacgtcg 595 Query: 283 ataattcgcctcgatcaagatgcattctcagctcgtgtgaggaaatacatagagcaacta 342 | || | ||||||||||||||||||||||| || |||||| |||| ||||||||| Sbjct: 596 ttggtttcaattgatcaagatgcattctcagctcgggtcaggaaaaacattgagcaacta 655 Query: 343 gctgcacttgtgagcaactatcctttgtctgatccagaggatgagcagcttcaaggcatg 402 |||||||| |||| | |||||| ||||| | ||||| || ||||| |||||| || Sbjct: 656 gctgcactgttgagaagctatccgttgtcgaacccagaagacgagcaagttcaagatata 715 Query: 403 atgagggagatacggctgaaattcagcgttatcacaggaagcttaggagcaaaattgggg 462 ||| | ||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||| | Sbjct: 716 atggagaagataagactgaaattcagggttatcacagcaagtttaggtacaaaactggag 775 Query: 463 tatgaaggtcgccccacatcatctgagcaagacattgaggatatgtagcttgtttag 519 ||| |||||||||| |||||||| |||| || |||||||| |||| || |||||| Sbjct: 776 tatcaaggtcgccctacatcatccaagcaggatgttgaggatctgtaactagtttag 832
>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence Length = 184736 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Minus Query: 726 ttggggtcacgttgttcattat 747 |||||||||||||||||||||| Sbjct: 12744 ttggggtcacgttgttcattat 12723
>gb|AC126798.3| Mus musculus BAC clone RP24-229N7 from chromosome 1, complete sequence Length = 172452 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Minus Query: 726 ttggggtcacgttgttcattat 747 |||||||||||||||||||||| Sbjct: 161853 ttggggtcacgttgttcattat 161832
>gb|AC024600.5| Homo sapiens chromosome 10 clone RP11-179K3, complete sequence Length = 147878 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Minus Query: 594 tctcttttgattttgtacttat 615 |||||||||||||||||||||| Sbjct: 117758 tctcttttgattttgtacttat 117737
>emb|AM084333.1| Mus musculus chromosome 12 Igh-C and proximal IgH-V region Length = 124263 Score = 44.1 bits (22), Expect = 0.75 Identities = 28/30 (93%) Strand = Plus / Minus Query: 724 ttttggggtcacgttgttcattatatatgt 753 ||||||||||| || ||||||||||||||| Sbjct: 91380 ttttggggtcaggtagttcattatatatgt 91351
>emb|AJ972403.2| Mus musculus chromosome 12 BAC clone 4k8 Length = 149371 Score = 44.1 bits (22), Expect = 0.75 Identities = 28/30 (93%) Strand = Plus / Plus Query: 724 ttttggggtcacgttgttcattatatatgt 753 ||||||||||| || ||||||||||||||| Sbjct: 29618 ttttggggtcaggtagttcattatatatgt 29647
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 44.1 bits (22), Expect = 0.75 Identities = 28/30 (93%) Strand = Plus / Minus Query: 724 ttttggggtcacgttgttcattatatatgt 753 ||||||||||| || ||||||||||||||| Sbjct: 7213 ttttggggtcaggtagttcattatatatgt 7184
>emb|CU024887.12| M.truncatula DNA sequence from clone MTH2-174G4 on chromosome 3, complete sequence Length = 113443 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gtttcataccatggattttct 110 ||||||||||||||||||||| Sbjct: 92009 gtttcataccatggattttct 91989
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 613 tatgatgatgttctgtttcac 633 ||||||||||||||||||||| Sbjct: 2405871 tatgatgatgttctgtttcac 2405851
>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence Length = 205029 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 cctggtatctggaaaggaaga 197 ||||||||||||||||||||| Sbjct: 102004 cctggtatctggaaaggaaga 101984
>gb|AC134546.4| Mus musculus BAC clone RP24-471H17 from chromosome 18, complete sequence Length = 208921 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 700 caaaatcttcaaacttgagag 720 ||||||||||||||||||||| Sbjct: 33110 caaaatcttcaaacttgagag 33090
>gb|AY273197.1| Heteropneustes fossilis minisatellite-associated sequence Length = 2472 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tccagaggatgagcagcttca 395 ||||||||||||||||||||| Sbjct: 2395 tccagaggatgagcagcttca 2415
>gb|AC102567.8| Mus musculus chromosome 9, clone RP23-224F1, complete sequence Length = 198097 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 146169 gaaaggaagaggggaggcagg 146189
>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence Length = 235509 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 231298 gaaaggaagaggggaggcagg 231318
>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence Length = 214509 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 69785 gaaaggaagaggggaggcagg 69805
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 40304 gaaaggaagaggggaggcagg 40284
>emb|CT010504.7| M.truncatula DNA sequence from clone MTH2-28A3 on chromosome 3, complete sequence Length = 114882 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gtttcataccatggattttct 110 ||||||||||||||||||||| Sbjct: 15966 gtttcataccatggattttct 15946
>emb|AL604062.15| Mouse DNA sequence from clone RP23-104B6 on chromosome 11 Contains a novel gene, a ferritin light chain (Ftl) pseudogene and a CpG island, complete sequence Length = 216510 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 59279 gaaaggaagaggggaggcagg 59299
>gb|AC155813.2| Mus musculus BAC clone RP24-167L2 from 9, complete sequence Length = 166097 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 46569 gaaaggaagaggggaggcagg 46589
>gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosome 14, complete sequence Length = 216861 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 166848 gaaaggaagaggggaggcagg 166828
>emb|AL954823.1| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 50368 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gaaaggaagaggggaggcagg 208 ||||||||||||||||||||| Sbjct: 10065 gaaaggaagaggggaggcagg 10085 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 150,316,940 Number of extensions: 8086481 Number of successful extensions: 169701 Number of sequences better than 10.0: 26 Number of HSP's gapped: 169694 Number of HSP's successfully gapped: 31 Length of query: 786 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 764 Effective length of database: 18,508,616,841 Effective search space: 14140583266524 Effective search space used: 14140583266524 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)