| Clone Name | FLbaf68c17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001065822.1| Oryza sativa (japonica cultivar-group) Os07g0247100 (Os07g0247100) mRNA, complete cds Length = 1386 Score = 404 bits (204), Expect = e-109 Identities = 480/572 (83%) Strand = Plus / Plus Query: 384 tttaatgccatctgcagatcattataggctaactactagatatcttgatgagaaactgca 443 |||||||||| |||||| |||||||||||| || |||||| ||||||| ||| |||| Sbjct: 377 tttaatgccaagtgcagaacattataggctagtgaccagatatattgatgacaaattgca 436 Query: 444 acatttgataagcaggtcagacaattttagacagattgttttattgacagatggaatgga 503 |||||| ||||||| ||||| || |||||||||||||| | ||||||||||||||||| Sbjct: 437 acatttcataagcaattcagatgatcttagacagattgttctgttgacagatggaatgga 496 Query: 504 cactcgtccatataggcttagctggccaaggatgtctatcgtgtacgatgtatcacctgg 563 ||||||||| || ||||| |||||||||||| ||||| | ||||| |||||||||||| | Sbjct: 497 cactcgtccttacaggctaagctggccaaggttgtctgttgtgtatgatgtatcacctag 556 Query: 564 aagaatcttcagtacagcagcccagcaactcagaggagcaggagcaaaaatatcgcggaa 623 |||| |||||| ||| ||| | ||||||||||||||||| |||||||||||||| ||||| Sbjct: 557 aagagtcttcattactgcatcacagcaactcagaggagccggagcaaaaatatcacggaa 616 Query: 624 ctgtgttctgtttcatactcctttagagtctcctgatttacaagagggcctgtgcaaaaa 683 ||||||| | |||||||| ||| |||||||||||| || |||| |||| || ||||| Sbjct: 617 ctgtgttgtacttcatacttcttcagagtctcctgacttgcaagcgggcttgaataaaaa 676 Query: 684 tggcttcaatggtaataggccaagcttgtgggtactacagggtttacctttgtcctcttc 743 |||||||||||| |||||||| |||||||||||||| |||||||||||||||| | ||| Sbjct: 677 tggcttcaatgggaataggccgagcttgtgggtactgcagggtttacctttgttcacttt 736 Query: 744 ttcaagcttcaaaagacttttgctcgttataagcaatttagcaatgaaagggggtatctt 803 | |||||| | |||||||| || || |||||||||||||||||||| ||||||| Sbjct: 737 taaaagcttggaggaccttttgcttgtcattggcaatttagcaatgaaagggagtatctt 796 Query: 804 cataggagaggtgccacattttccagactggacggcagcagcagacatggtccccgaaca 863 ||||| |||||||||| |||| | | ||| |||||| ||||||||| | | || || Sbjct: 797 tataggggaggtgccacgttttacgcagtggggagcagcaacagacatggcctcagagca 856 Query: 864 agacaggctggaaaaccttttctttacccacggtttccgggttggctttgttctctatga 923 ||||||||||||||||||||||||||| || ||||| || || ||||||||| |||||| Sbjct: 857 agacaggctggaaaaccttttctttactcagggttttcgtgtcagctttgttcactatga 916 Query: 924 aaatgttgcaaaggatctgggcttagatctag 955 | | || ||||||||| | ||||||| ||||| Sbjct: 917 agaagtggcaaaggatgttggcttaggtctag 948 Score = 125 bits (63), Expect = 5e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 986 tttttgttgcagaacagctgcggttttcagatgcacagatggagagcttctggacgcatt 1045 ||||| |||||||||||||||| || |||||||| ||||||||||||||| ||| ||||| Sbjct: 979 tttttattgcagaacagctgcgtttctcagatgctcagatggagagcttccggatgcatt 1038 Query: 1046 ttgataggacagaggaggatgctgatgaagaaggattcgaggaactttagt 1096 |||| || | |||||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1039 ttgaaagaatagaggatgatgccgatgaagacggattcgaggaactttagt 1089 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Plus Query: 292 cgccgctcagatcccctttttattgatccatatgctgctgtgctactttcacttgatgtg 351 |||||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct: 285 cgccgcccagatcctctttttattgacccatatgcagctgttctactttcacttgatgtg 344 Query: 352 gc 353 || Sbjct: 345 gc 346
>dbj|AK068864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O10, full insert sequence Length = 1387 Score = 396 bits (200), Expect = e-107 Identities = 479/572 (83%) Strand = Plus / Plus Query: 384 tttaatgccatctgcagatcattataggctaactactagatatcttgatgagaaactgca 443 |||||||||| |||||| |||||||||||| || |||||| ||||||| ||| |||| Sbjct: 378 tttaatgccaagtgcagaacattataggctagtgaccagatatattgatgacaaattgca 437 Query: 444 acatttgataagcaggtcagacaattttagacagattgttttattgacagatggaatgga 503 |||||| ||||||| ||||| || |||||||||||||| | ||||||||||||||||| Sbjct: 438 acatttcataagcaattcagatgatcttagacagattgttctgttgacagatggaatgga 497 Query: 504 cactcgtccatataggcttagctggccaaggatgtctatcgtgtacgatgtatcacctgg 563 ||||||||| || ||||| |||||||||||| ||||| | ||||| |||||||||||| | Sbjct: 498 cactcgtccttacaggctaagctggccaaggttgtctgttgtgtatgatgtatcacctag 557 Query: 564 aagaatcttcagtacagcagcccagcaactcagaggagcaggagcaaaaatatcgcggaa 623 |||| |||||| ||| ||| | ||||||||||||||||| |||||||||||||| ||||| Sbjct: 558 aagagtcttcattactgcatcacagcaactcagaggagccggagcaaaaatatcacggaa 617 Query: 624 ctgtgttctgtttcatactcctttagagtctcctgatttacaagagggcctgtgcaaaaa 683 ||||||| | |||||||| ||| |||||||||||| || |||| |||| || ||||| Sbjct: 618 ctgtgttgtacttcatacttcttcagagtctcctgacttgcaagcgggcttgaataaaaa 677 Query: 684 tggcttcaatggtaataggccaagcttgtgggtactacagggtttacctttgtcctcttc 743 |||||||||||| |||||||| |||||||||||||| |||||||||||||||| | ||| Sbjct: 678 tggcttcaatgggaataggccgagcttgtgggtactgcagggtttacctttgttcacttt 737 Query: 744 ttcaagcttcaaaagacttttgctcgttataagcaatttagcaatgaaagggggtatctt 803 | |||||| | |||||||| || || |||||||||||||||||||| ||||||| Sbjct: 738 taaaagcttggaggaccttttgcttgtcattggcaatttagcaatgaaagggagtatctt 797 Query: 804 cataggagaggtgccacattttccagactggacggcagcagcagacatggtccccgaaca 863 ||||| |||||||||| |||| | | ||| |||||| ||||||||| | | || || Sbjct: 798 tataggggaggtgccacgttttacgcagtggggagcagcaacagacatggcctcagagca 857 Query: 864 agacaggctggaaaaccttttctttacccacggtttccgggttggctttgttctctatga 923 |||||||||||||||||||| |||||| || ||||| || || ||||||||| |||||| Sbjct: 858 agacaggctggaaaacctttcctttactcagggttttcgtgtcagctttgttcactatga 917 Query: 924 aaatgttgcaaaggatctgggcttagatctag 955 | | || ||||||||| | ||||||| ||||| Sbjct: 918 agaagtggcaaaggatgttggcttaggtctag 949 Score = 125 bits (63), Expect = 5e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 986 tttttgttgcagaacagctgcggttttcagatgcacagatggagagcttctggacgcatt 1045 ||||| |||||||||||||||| || |||||||| ||||||||||||||| ||| ||||| Sbjct: 980 tttttattgcagaacagctgcgtttctcagatgctcagatggagagcttccggatgcatt 1039 Query: 1046 ttgataggacagaggaggatgctgatgaagaaggattcgaggaactttagt 1096 |||| || | |||||| ||||| |||||||| ||||||||||||||||||| Sbjct: 1040 ttgaaagaatagaggatgatgccgatgaagacggattcgaggaactttagt 1090 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Plus Query: 292 cgccgctcagatcccctttttattgatccatatgctgctgtgctactttcacttgatgtg 351 |||||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct: 286 cgccgcccagatcctctttttattgacccatatgcagctgttctactttcacttgatgtg 345 Query: 352 gc 353 || Sbjct: 346 gc 347
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 127 bits (64), Expect = 1e-25 Identities = 109/124 (87%) Strand = Plus / Plus Query: 476 agattgttttattgacagatggaatggacactcgtccatataggcttagctggccaagga 535 |||||||| | |||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 8227364 agattgttctgttgacagatggaatggacactcgtccttacaggctaagctggccaaggt 8227423 Query: 536 tgtctatcgtgtacgatgtatcacctggaagaatcttcagtacagcagcccagcaactca 595 ||||| | ||||| |||||||||||| ||||| |||||| ||| ||| | |||||||||| Sbjct: 8227424 tgtctgttgtgtatgatgtatcacctagaagagtcttcattactgcatcacagcaactca 8227483 Query: 596 gagg 599 |||| Sbjct: 8227484 gagg 8227487 Score = 119 bits (60), Expect = 3e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 597 aggagcaggagcaaaaatatcgcggaactgtgttctgtttcatactcctttagagtctcc 656 |||||| |||||||||||||| |||||||||||| | |||||||| ||| ||||||||| Sbjct: 8228631 aggagccggagcaaaaatatcacggaactgtgttgtacttcatacttcttcagagtctcc 8228690 Query: 657 tgatttacaagagggcctgtgcaaaaatggcttcaatggtaataggccaagcttgtgggt 716 ||| || |||| |||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct: 8228691 tgacttgcaagcgggcttgaataaaaatggcttcaatgggaataggccgagcttgtgggt 8228750 Query: 717 actacagg 724 ||| |||| Sbjct: 8228751 actgcagg 8228758 Score = 85.7 bits (43), Expect = 4e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 1022 agatggagagcttctggacgcattttgataggacagaggaggatgctgatgaagaaggat 1081 |||||||||||||| ||| ||||||||| || | |||||| ||||| |||||||| |||| Sbjct: 8231666 agatggagagcttccggatgcattttgaaagaatagaggatgatgccgatgaagacggat 8231725 Query: 1082 tcgaggaactttagt 1096 ||||||||||||||| Sbjct: 8231726 tcgaggaactttagt 8231740 Score = 83.8 bits (42), Expect = 2e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 862 caagacaggctggaaaaccttttctttacccacggtttccgggttggctttgttctctat 921 ||||||||||||||||||||||||||||| || ||||| || || ||||||||| |||| Sbjct: 8230500 caagacaggctggaaaaccttttctttactcagggttttcgtgtcagctttgttcactat 8230559 Query: 922 gaaaatgttgcaaaggatctgggcttagatctag 955 ||| | || ||||||||| | ||||||| ||||| Sbjct: 8230560 gaagaagtggcaaaggatgttggcttaggtctag 8230593 Score = 77.8 bits (39), Expect = 1e-10 Identities = 51/55 (92%) Strand = Plus / Plus Query: 299 cagatcccctttttattgatccatatgctgctgtgctactttcacttgatgtggc 353 ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 8227113 cagatcctctttttattgacccatatgcagctgttctactttcacttgatgtggc 8227167 Score = 67.9 bits (34), Expect = 9e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 776 gcaatttagcaatgaaagggggtatcttcataggagaggtgccacatttt 825 |||||||||||||||||||| ||||||| ||||| |||||||||| |||| Sbjct: 8230331 gcaatttagcaatgaaagggagtatctttataggggaggtgccacgtttt 8230380 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 384 tttaatgccatctgcagatcattataggctaactactagatatcttgatgagaaactgca 443 |||||||||| |||||| |||||||||||| || |||||| ||||||| ||| |||| Sbjct: 8227198 tttaatgccaagtgcagaacattataggctagtgaccagatatattgatgacaaattgca 8227257 Query: 444 acatttgataagca 457 |||||| ||||||| Sbjct: 8227258 acatttcataagca 8227271 Score = 44.1 bits (22), Expect = 1.4 Identities = 31/34 (91%) Strand = Plus / Plus Query: 986 tttttgttgcagaacagctgcggttttcagatgc 1019 ||||| |||||||||||||||| || |||||||| Sbjct: 8230624 tttttattgcagaacagctgcgtttctcagatgc 8230657
>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0003K21 Length = 158810 Score = 127 bits (64), Expect = 1e-25 Identities = 109/124 (87%) Strand = Plus / Plus Query: 476 agattgttttattgacagatggaatggacactcgtccatataggcttagctggccaagga 535 |||||||| | |||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 110387 agattgttctgttgacagatggaatggacactcgtccttacaggctaagctggccaaggt 110446 Query: 536 tgtctatcgtgtacgatgtatcacctggaagaatcttcagtacagcagcccagcaactca 595 ||||| | ||||| |||||||||||| ||||| |||||| ||| ||| | |||||||||| Sbjct: 110447 tgtctgttgtgtatgatgtatcacctagaagagtcttcattactgcatcacagcaactca 110506 Query: 596 gagg 599 |||| Sbjct: 110507 gagg 110510 Score = 119 bits (60), Expect = 3e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 597 aggagcaggagcaaaaatatcgcggaactgtgttctgtttcatactcctttagagtctcc 656 |||||| |||||||||||||| |||||||||||| | |||||||| ||| ||||||||| Sbjct: 111654 aggagccggagcaaaaatatcacggaactgtgttgtacttcatacttcttcagagtctcc 111713 Query: 657 tgatttacaagagggcctgtgcaaaaatggcttcaatggtaataggccaagcttgtgggt 716 ||| || |||| |||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct: 111714 tgacttgcaagcgggcttgaataaaaatggcttcaatgggaataggccgagcttgtgggt 111773 Query: 717 actacagg 724 ||| |||| Sbjct: 111774 actgcagg 111781 Score = 85.7 bits (43), Expect = 4e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 1022 agatggagagcttctggacgcattttgataggacagaggaggatgctgatgaagaaggat 1081 |||||||||||||| ||| ||||||||| || | |||||| ||||| |||||||| |||| Sbjct: 114689 agatggagagcttccggatgcattttgaaagaatagaggatgatgccgatgaagacggat 114748 Query: 1082 tcgaggaactttagt 1096 ||||||||||||||| Sbjct: 114749 tcgaggaactttagt 114763 Score = 83.8 bits (42), Expect = 2e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 862 caagacaggctggaaaaccttttctttacccacggtttccgggttggctttgttctctat 921 ||||||||||||||||||||||||||||| || ||||| || || ||||||||| |||| Sbjct: 113523 caagacaggctggaaaaccttttctttactcagggttttcgtgtcagctttgttcactat 113582 Query: 922 gaaaatgttgcaaaggatctgggcttagatctag 955 ||| | || ||||||||| | ||||||| ||||| Sbjct: 113583 gaagaagtggcaaaggatgttggcttaggtctag 113616 Score = 77.8 bits (39), Expect = 1e-10 Identities = 51/55 (92%) Strand = Plus / Plus Query: 299 cagatcccctttttattgatccatatgctgctgtgctactttcacttgatgtggc 353 ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 110136 cagatcctctttttattgacccatatgcagctgttctactttcacttgatgtggc 110190 Score = 67.9 bits (34), Expect = 9e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 776 gcaatttagcaatgaaagggggtatcttcataggagaggtgccacatttt 825 |||||||||||||||||||| ||||||| ||||| |||||||||| |||| Sbjct: 113354 gcaatttagcaatgaaagggagtatctttataggggaggtgccacgtttt 113403 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 384 tttaatgccatctgcagatcattataggctaactactagatatcttgatgagaaactgca 443 |||||||||| |||||| |||||||||||| || |||||| ||||||| ||| |||| Sbjct: 110221 tttaatgccaagtgcagaacattataggctagtgaccagatatattgatgacaaattgca 110280 Query: 444 acatttgataagca 457 |||||| ||||||| Sbjct: 110281 acatttcataagca 110294 Score = 44.1 bits (22), Expect = 1.4 Identities = 31/34 (91%) Strand = Plus / Plus Query: 986 tttttgttgcagaacagctgcggttttcagatgc 1019 ||||| |||||||||||||||| || |||||||| Sbjct: 113647 tttttattgcagaacagctgcgtttctcagatgc 113680
>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0639B07 Length = 138780 Score = 127 bits (64), Expect = 1e-25 Identities = 109/124 (87%) Strand = Plus / Plus Query: 476 agattgttttattgacagatggaatggacactcgtccatataggcttagctggccaagga 535 |||||||| | |||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 22476 agattgttctgttgacagatggaatggacactcgtccttacaggctaagctggccaaggt 22535 Query: 536 tgtctatcgtgtacgatgtatcacctggaagaatcttcagtacagcagcccagcaactca 595 ||||| | ||||| |||||||||||| ||||| |||||| ||| ||| | |||||||||| Sbjct: 22536 tgtctgttgtgtatgatgtatcacctagaagagtcttcattactgcatcacagcaactca 22595 Query: 596 gagg 599 |||| Sbjct: 22596 gagg 22599 Score = 119 bits (60), Expect = 3e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 597 aggagcaggagcaaaaatatcgcggaactgtgttctgtttcatactcctttagagtctcc 656 |||||| |||||||||||||| |||||||||||| | |||||||| ||| ||||||||| Sbjct: 23743 aggagccggagcaaaaatatcacggaactgtgttgtacttcatacttcttcagagtctcc 23802 Query: 657 tgatttacaagagggcctgtgcaaaaatggcttcaatggtaataggccaagcttgtgggt 716 ||| || |||| |||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct: 23803 tgacttgcaagcgggcttgaataaaaatggcttcaatgggaataggccgagcttgtgggt 23862 Query: 717 actacagg 724 ||| |||| Sbjct: 23863 actgcagg 23870 Score = 85.7 bits (43), Expect = 4e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 1022 agatggagagcttctggacgcattttgataggacagaggaggatgctgatgaagaaggat 1081 |||||||||||||| ||| ||||||||| || | |||||| ||||| |||||||| |||| Sbjct: 26778 agatggagagcttccggatgcattttgaaagaatagaggatgatgccgatgaagacggat 26837 Query: 1082 tcgaggaactttagt 1096 ||||||||||||||| Sbjct: 26838 tcgaggaactttagt 26852 Score = 83.8 bits (42), Expect = 2e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 862 caagacaggctggaaaaccttttctttacccacggtttccgggttggctttgttctctat 921 ||||||||||||||||||||||||||||| || ||||| || || ||||||||| |||| Sbjct: 25612 caagacaggctggaaaaccttttctttactcagggttttcgtgtcagctttgttcactat 25671 Query: 922 gaaaatgttgcaaaggatctgggcttagatctag 955 ||| | || ||||||||| | ||||||| ||||| Sbjct: 25672 gaagaagtggcaaaggatgttggcttaggtctag 25705 Score = 77.8 bits (39), Expect = 1e-10 Identities = 51/55 (92%) Strand = Plus / Plus Query: 299 cagatcccctttttattgatccatatgctgctgtgctactttcacttgatgtggc 353 ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 22225 cagatcctctttttattgacccatatgcagctgttctactttcacttgatgtggc 22279 Score = 67.9 bits (34), Expect = 9e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 776 gcaatttagcaatgaaagggggtatcttcataggagaggtgccacatttt 825 |||||||||||||||||||| ||||||| ||||| |||||||||| |||| Sbjct: 25443 gcaatttagcaatgaaagggagtatctttataggggaggtgccacgtttt 25492 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 384 tttaatgccatctgcagatcattataggctaactactagatatcttgatgagaaactgca 443 |||||||||| |||||| |||||||||||| || |||||| ||||||| ||| |||| Sbjct: 22310 tttaatgccaagtgcagaacattataggctagtgaccagatatattgatgacaaattgca 22369 Query: 444 acatttgataagca 457 |||||| ||||||| Sbjct: 22370 acatttcataagca 22383 Score = 44.1 bits (22), Expect = 1.4 Identities = 31/34 (91%) Strand = Plus / Plus Query: 986 tttttgttgcagaacagctgcggttttcagatgc 1019 ||||| |||||||||||||||| || |||||||| Sbjct: 25736 tttttattgcagaacagctgcgtttctcagatgc 25769
>ref|NM_204346.1| Gallus gallus pyruvate carboxylase (PCX), mRNA gb|AF509529.1| Gallus gallus pyruvate carboxylase (PYC) mRNA, complete cds; nuclear gene for mitochondrial product Length = 3559 Score = 52.0 bits (26), Expect = 0.006 Identities = 26/26 (100%) Strand = Plus / Minus Query: 179 tcgccaccggcgccgacgtccccggc 204 |||||||||||||||||||||||||| Sbjct: 526 tcgccaccggcgccgacgtccccggc 501
>ref|XM_310671.2| Anopheles gambiae str. PEST ENSANGP00000020066 (ENSANGG00000017577), partial mRNA Length = 2133 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 243 gctcctcctcgctgctctccgcg 265 ||||||||||||||||||||||| Sbjct: 1819 gctcctcctcgctgctctccgcg 1797
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1060 gaggatgctgatgaagaaggattcgaggaa 1089 ||||||| ||||||||||||||||||||| Sbjct: 133197 gaggatgacgatgaagaaggattcgaggaa 133226
>emb|AL354936.21| Human DNA sequence from clone RP11-374A22 on chromosome 6 Contains a novel gene, the 5' end of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1 and a CpG island, complete sequence Length = 161618 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 gctctccgcgccgctcgcctca 277 |||||||||||||||||||||| Sbjct: 99787 gctctccgcgccgctcgcctca 99766
>ref|XM_883610.1| Candida albicans SC5314 hypothetical protein (CaJ7.0085) partial mRNA Length = 1707 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1060 gaggatgctgatgaagaaggattcgaggaa 1089 ||||||| ||||||||||||||||||||| Sbjct: 631 gaggatgacgatgaagaaggattcgaggaa 660
>emb|AJ328190.1|HSA328190 Homo sapiens genomic sequence surrounding NotI site, clone NL6-IF13C Length = 323 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 gctctccgcgccgctcgcctca 277 |||||||||||||||||||||| Sbjct: 41 gctctccgcgccgctcgcctca 20
>ref|XM_715247.1| Candida albicans SC5314 hypothetical protein (RTF1) partial mRNA Length = 870 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1060 gaggatgctgatgaagaaggattcgaggaa 1089 ||||||| ||||||||||||||||||||| Sbjct: 631 gaggatgacgatgaagaaggattcgaggaa 660
>ref|XM_426124.2| PREDICTED: Gallus gallus hypothetical LOC428568 (LOC428568), mRNA Length = 3319 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 424 aggatgctgatgaagaaggat 404
>ref|NM_001064976.1| Oryza sativa (japonica cultivar-group) Os06g0694300 (Os06g0694300) mRNA, complete cds Length = 1947 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 atgccatctgcagatcattat 408 ||||||||||||||||||||| Sbjct: 1225 atgccatctgcagatcattat 1245
>ref|NM_001049603.1| Oryza sativa (japonica cultivar-group) Os01g0373500 (Os01g0373500) mRNA, partial cds Length = 2331 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcgcgtcccgctcctcctcgc 254 ||||||||||||||||||||| Sbjct: 246 gcgcgtcccgctcctcctcgc 266
>ref|XM_001135166.1| PREDICTED: Pan troglodytes hypothetical LOC472008, transcript variant 1 (LOC472008), mRNA Length = 6518 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 609 aggatgctgatgaagaaggat 589
>ref|XM_527387.2| PREDICTED: Pan troglodytes hypothetical LOC472008, transcript variant 2 (LOC472008), mRNA Length = 6455 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 546 aggatgctgatgaagaaggat 526
>emb|AM260480.1| Ralstonia eutropha H16 chromosome 2 Length = 2912490 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 gccgctgctccggccacatcc 95 ||||||||||||||||||||| Sbjct: 815479 gccgctgctccggccacatcc 815459
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 20731269 ctgctgtgctactttcacttg 20731249
>ref|XM_001065444.1| PREDICTED: Rattus norvegicus similar to KIAA0240 (predicted) (RGD1305680_predicted), mRNA Length = 4110 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 508 aggatgctgatgaagaaggat 488
>ref|XM_217342.4| PREDICTED: Rattus norvegicus similar to KIAA0240 (predicted) (RGD1305680_predicted), mRNA Length = 4069 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 467 aggatgctgatgaagaaggat 447
>ref|XR_010488.1| PREDICTED: Macaca mulatta hypothetical protein LOC698668 (LOC698668), mRNA Length = 6525 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 607 aggatgctgatgaagaaggat 587
>ref|XM_001002862.1| PREDICTED: Mus musculus cDNA sequence BC032203 (BC032203), mRNA Length = 6982 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 1270 aggatgctgatgaagaaggat 1250
>ref|XM_924235.2| PREDICTED: Mus musculus cDNA sequence BC032203, transcript variant 4 (BC032203), mRNA Length = 6565 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 853 aggatgctgatgaagaaggat 833
>ref|XM_001001238.1| PREDICTED: Mus musculus cDNA sequence BC032203 (BC032203), mRNA Length = 6565 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 853 aggatgctgatgaagaaggat 833
>gb|AC165289.2| Mus musculus BAC clone RP23-467L11 from chromosome 17, complete sequence Length = 193418 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 132239 aggatgctgatgaagaaggat 132219
>gb|AC108432.14| Mus musculus chromosome 7, clone RP23-170D4, complete sequence Length = 183180 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 732 tttgtcctcttcttcaagctt 752 ||||||||||||||||||||| Sbjct: 130339 tttgtcctcttcttcaagctt 130319
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gcccgtgctgccgacgctcgccgcg 75 |||||||||||||||||||| |||| Sbjct: 3570359 gcccgtgctgccgacgctcggcgcg 3570383
>ref|XM_505936.1| Yarrowia lipolytica CLIB122, YALI0F27203g predicted mRNA Length = 1872 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 837 ggcagcagcagacatggtccc 857 ||||||||||||||||||||| Sbjct: 816 ggcagcagcagacatggtccc 796
>ref|NM_015349.1| Homo sapiens KIAA0240 (KIAA0240), mRNA Length = 6520 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 608 aggatgctgatgaagaaggat 588
>ref|XM_532139.2| PREDICTED: Canis familiaris hypothetical LOC474904 (LOC474904), mRNA Length = 3280 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 457 aggatgctgatgaagaaggat 437
>ref|NM_136209.2| Drosophila melanogaster CG9318-RA (CG9318), mRNA Length = 2582 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 1958 ctgctgtgctactttcacttg 1978
>dbj|AK093526.1| Homo sapiens cDNA FLJ36207 fis, clone TESTI2028776 Length = 2650 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 1219 aggatgctgatgaagaaggat 1199
>dbj|AK091434.1| Homo sapiens cDNA FLJ34115 fis, clone FCBBF3009152 Length = 2464 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 500 aggatgctgatgaagaaggat 480
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 891 ccacggtttccgggttggctt 911 ||||||||||||||||||||| Sbjct: 990603 ccacggtttccgggttggctt 990583
>dbj|AB168853.1| Macaca fascicularis testis cDNA, clone: QtsA-15401, similar to human KIAA0240 (KIAA0240), mRNA, RefSeq: XM_166479.2 Length = 1930 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 482 aggatgctgatgaagaaggat 462
>emb|CT030088.1| Xenopus tropicalis finished cDNA, clone TEgg017h09 Length = 1667 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 909 ctttgttctctatgaaaatgt 929 ||||||||||||||||||||| Sbjct: 517 ctttgttctctatgaaaatgt 537
>dbj|AK029927.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932406F21 product:hypothetical protein, full insert sequence Length = 3688 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 511 aggatgctgatgaagaaggat 491
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 atgccatctgcagatcattat 408 ||||||||||||||||||||| Sbjct: 28603474 atgccatctgcagatcattat 28603494
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcgcgtcccgctcctcctcgc 254 ||||||||||||||||||||| Sbjct: 15375662 gcgcgtcccgctcctcctcgc 15375682
>dbj|D87077.2| Homo sapiens mRNA for KIAA0240 protein, partial cds Length = 6512 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 772 aggatgctgatgaagaaggat 752
>gb|AY069665.1| Drosophila melanogaster LD44273 full length cDNA Length = 2574 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 1932 ctgctgtgctactttcacttg 1952
>emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on chromosome 9q21.12-21.32 Contains a DnaJ (Hsp40) homolog subfamily B member 5 (DNAJB5) pseudogene, a lysophospholipase II (LYPLA2) pseudogene, an eukaryotic translation initiation factor 3 subunit 1 35kDa (EIF3S1) pseudogene, the gene (possible pseudogene) for a novel protein similar to forkhead box B1 (FOXB1), ATP synthase H+ transporting mitochondrial F0 complex subunit f isoform 2 (ATP5J2) pseudogene and three CpG islands, complete sequence Length = 146466 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 590 aactcagaggagcaggagcaaaaat 614 ||||||||||||||| ||||||||| Sbjct: 78420 aactcagaggagcagaagcaaaaat 78444
>emb|AL353716.18| Human DNA sequence from clone RP11-501I18 on chromosome 6 Contains the TBCC gene for tubulin-specific chaperone c, part of a novel gene, part of the gene for a novel protein (KIAA0240) and CpG islands, complete sequence Length = 98340 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 88724 aggatgctgatgaagaaggat 88704
>gb|AC138559.3| Lemur catta clone LB2-251E18, complete sequence Length = 171058 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 acagattgttttattgacaga 494 ||||||||||||||||||||| Sbjct: 29841 acagattgttttattgacaga 29861
>emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19, complete sequence Length = 128770 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cgctcctcctcgctgctctcc 262 ||||||||||||||||||||| Sbjct: 54021 cgctcctcctcgctgctctcc 54001
>emb|BX017601.1|CNS08LQT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA26CE02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 855 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1053 gacagaggaggatgctgatga 1073 ||||||||||||||||||||| Sbjct: 810 gacagaggaggatgctgatga 790
>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone BACR31P14, complete sequence Length = 156806 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 130611 ctgctgtgctactttcacttg 130591
>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12 Length = 348672 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 gggaagaagaatcacgccgct 298 ||||||||||||||||||||| Sbjct: 303641 gggaagaagaatcacgccgct 303621
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 42.1 bits (21), Expect = 5.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 48 catgcccgtgctgccgacgctcgccgcgccgctgctc 84 ||||||| |||||| |||||| |||||||||||||| Sbjct: 141591 catgcccttgctgcagacgctgaccgcgccgctgctc 141627
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 42.1 bits (21), Expect = 5.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 48 catgcccgtgctgccgacgctcgccgcgccgctgctc 84 ||||||| |||||| |||||| |||||||||||||| Sbjct: 60795 catgcccttgctgcagacgctgaccgcgccgctgctc 60831
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 42.1 bits (21), Expect = 5.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 48 catgcccgtgctgccgacgctcgccgcgccgctgctc 84 ||||||| |||||| |||||| |||||||||||||| Sbjct: 48695 catgcccttgctgcagacgctgaccgcgccgctgctc 48731
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 1213 ctgctgtgctactttcacttg 1193
>emb|CR627378.1| Homo sapiens mRNA; cDNA DKFZp686P0250 (from clone DKFZp686P0250) Length = 6343 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 573 aggatgctgatgaagaaggat 553
>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045D11 Length = 142320 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcgcgtcccgctcctcctcgc 254 ||||||||||||||||||||| Sbjct: 53203 gcgcgtcccgctcctcctcgc 53223
>dbj|AP003198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1039D07 Length = 135301 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcgcgtcccgctcctcctcgc 254 ||||||||||||||||||||| Sbjct: 117021 gcgcgtcccgctcctcctcgc 117041
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 atgccatctgcagatcattat 408 ||||||||||||||||||||| Sbjct: 94952 atgccatctgcagatcattat 94972
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 atgccatctgcagatcattat 408 ||||||||||||||||||||| Sbjct: 4040 atgccatctgcagatcattat 4060
>dbj|AK107175.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G08, full insert sequence Length = 2331 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcgcgtcccgctcctcctcgc 254 ||||||||||||||||||||| Sbjct: 246 gcgcgtcccgctcctcctcgc 266
>emb|AL833540.1|HSM804853 Homo sapiens mRNA; cDNA DKFZp686E233 (from clone DKFZp686E233) Length = 6361 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 608 aggatgctgatgaagaaggat 588
>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete sequence Length = 231341 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 797 gtatcttcataggagaggtgc 817 ||||||||||||||||||||| Sbjct: 127915 gtatcttcataggagaggtgc 127935
>emb|CT030702.11| Mouse DNA sequence from clone RP23-76I16 on chromosome 17, complete sequence Length = 222733 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 aggatgctgatgaagaaggat 1081 ||||||||||||||||||||| Sbjct: 44025 aggatgctgatgaagaaggat 44005
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 ctgctgtgctactttcacttg 346 ||||||||||||||||||||| Sbjct: 88322 ctgctgtgctactttcacttg 88342
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 837 ggcagcagcagacatggtccc 857 ||||||||||||||||||||| Sbjct: 3455649 ggcagcagcagacatggtccc 3455669 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 274,158,225 Number of extensions: 15623559 Number of successful extensions: 390359 Number of sequences better than 10.0: 64 Number of HSP's gapped: 390359 Number of HSP's successfully gapped: 93 Length of query: 1407 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1384 Effective length of database: 18,503,978,556 Effective search space: 25609506321504 Effective search space used: 25609506321504 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)