ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf68c05 |
|---|---|
| Clone Library Name | barley_pub |
>P34909:NOT4_YEAST General negative regulator of transcription subunit 4 - Saccharomyces| cerevisiae (Baker's yeast) Length = 587 Score = 64.7 bits (156), Expect = 1e-09 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRIL---EADARCPGCRKLYN 1143 CP+C E +D TD +F PCPCG+ +C FC+ I E + RCP CR+ Y+ Sbjct: 33 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82
>Q09818:YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c -| Schizosaccharomyces pombe (Fission yeast) Length = 489 Score = 61.2 bits (147), Expect = 1e-08 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILE-ADARCPGCRKLY 1140 + CP+C E++D +D +F PC CG+ +C FC I E + RCP CR+LY Sbjct: 16 MCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>Q8BT14:CNOT4_MOUSE CCR4-NOT transcription complex subunit 4 - Mus musculus (Mouse)| Length = 575 Score = 58.5 bits (140), Expect = 7e-08 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +1 Query: 994 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI-LEADARCPGCRKLY 1140 P+ CP+C E L+ D +F PC CG+ +C FC RI + + CP CRK Y Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
>O95628:CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 - Homo sapiens (Human)| Length = 575 Score = 58.5 bits (140), Expect = 7e-08 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +1 Query: 994 PLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI-LEADARCPGCRKLY 1140 P+ CP+C E L+ D +F PC CG+ +C FC RI + + CP CRK Y Sbjct: 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
>Q498M5:SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 - Rattus norvegicus (Rat)| Length = 735 Score = 41.2 bits (95), Expect = 0.012 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEA--DARCPGCRKL 1137 L CP+C+E LD T + LPC F C C +RI +A + RCP CR L Sbjct: 10 LECPVCFEKLDVT-AKVLPCQHTF--CKPCLQRIFKAHKELRCPECRTL 55
>Q8BZT2:SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 - Mus musculus (Mouse)| Length = 735 Score = 41.2 bits (95), Expect = 0.012 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEA--DARCPGCRKL 1137 L CP+C+E LD T + LPC F C C +RI +A + RCP CR L Sbjct: 10 LECPVCFEKLDVT-AKVLPCQHTF--CKPCLQRIFKAHKELRCPECRTL 55
>Q96PM5:ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 - Homo| sapiens (Human) Length = 261 Score = 39.7 bits (91), Expect = 0.034 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 946 CWGMGMSAAHQSILSMPL-SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCP 1122 C M + H+ I ++ +CPIC ED+ + PCG L C++ +L+ RCP Sbjct: 125 CLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 184 Query: 1123 GC 1128 C Sbjct: 185 LC 186
>Q8TEC5:SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 - Homo sapiens (Human)| Length = 729 Score = 39.7 bits (91), Expect = 0.034 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEA--DARCPGCR 1131 L CP+C+E LD T + LPC F C C +R+ +A + RCP CR Sbjct: 10 LECPVCFEKLDVT-AKVLPCQHTF--CKPCLQRVFKAHKELRCPECR 53
>Q8HXH0:LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 - Macaca| fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 718 Score = 39.7 bits (91), Expect = 0.034 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Frame = +1 Query: 793 ATSDSVPQANTSKRTEPIRSNARAWAPDDTFRPQSLPSISKQASFPARIGNCWGMGMSAA 972 ATS + T K E R + + + +DT +P+ + + P G+ + + A Sbjct: 362 ATSPKAASSKTGKCQEKKRKHCQIESQEDT----GMPNKASKQDPPTDQGDKPALSLPLA 417 Query: 973 HQSILSMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 S + L C +C +P + PCG CL C +R L+ +A+CP C+ Sbjct: 418 --SFDASDLECALCMRLFYEPVTT-----PCGHTFCLKCLERCLDHNAKCPLCK 464
>Q496Y0:LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 - Homo| sapiens (Human) Length = 759 Score = 38.1 bits (87), Expect = 0.098 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Frame = +1 Query: 793 ATSDSVPQANTSKRTEPIRSNARAWAPDDTFRPQSLPSISKQASFPARIGNCWGMGMSAA 972 ATS + T K E R + + + ++T +P+ + + P G+ + + A Sbjct: 403 ATSPKAASSKTGKCQEKKRKHCQIESQEET----GMPNKASKQDPPTDQGDKPALSLPLA 458 Query: 973 HQSILSMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 S + L C +C +P + PCG CL C +R L+ +A+CP C+ Sbjct: 459 --SFDASDLECALCMRLFYEPVTT-----PCGHTFCLKCLERCLDHNAKCPLCK 505
>Q9D4H7:LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 - Mus| musculus (Mouse) Length = 753 Score = 37.4 bits (85), Expect = 0.17 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Frame = +1 Query: 823 TSKRTEPIRSNARAWAPDDTFRPQSLPSISKQASFPARIGNCWGMGMSAAHQSILSMPLS 1002 T K E R+ + +DT P +SKQ FPA G +S S + L Sbjct: 407 TGKCQEKKRNRCQIETQEDTELPNK---VSKQ-DFPAEQGA--KPDLSNPLGSFDASDLE 460 Query: 1003 CPICYEDL-DPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 C +C +P + PCG CL C +R L+ +A+CP C+ Sbjct: 461 CSLCMRLFYEPVTT-----PCGHTFCLKCLERCLDHNAKCPLCK 499
>Q50639:PPIB_MYCTU Probable peptidyl-prolyl cis-trans isomerase B - Mycobacterium| tuberculosis Length = 308 Score = 37.0 bits (84), Expect = 0.22 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Frame = +1 Query: 721 VADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTSKRTEPIRSNARAWA-------PDD 879 VA ++V N HQS + P + S S PQA T+ P + +A A PD Sbjct: 62 VAVVVTVVVNKDDHQSTTSATPTDSASTSPPQAATAPPLPPFKPSANLGANCQYPPSPDK 121 Query: 880 TFRPQSLPSISKQASFPARI 939 +P LP K + PA++ Sbjct: 122 AVKPVKLPRTGKVPTDPAQV 141
>Q9CR50:ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 - Mus| musculus (Mouse) Length = 261 Score = 36.2 bits (82), Expect = 0.37 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 1000 SCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 1128 +CPIC ED+ + PCG L C++ +L+ RCP C Sbjct: 144 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 186
>Q86Y13:DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 - Homo sapiens (Human)| Length = 1208 Score = 36.2 bits (82), Expect = 0.37 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 C IC+E+L P + S LPC FH C + L CP CR Sbjct: 1148 CVICHENLSPENLSVLPCAHKFH--AQCIRPWLMQQGTCPTCR 1188
>Q7TPV2:DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 - Mus musculus (Mouse)| Length = 1204 Score = 35.8 bits (81), Expect = 0.49 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 C IC+E+L P + S LPC FH C + L CP CR Sbjct: 1144 CVICHENLSPENLSVLPCAHKFH--SQCIRPWLMQQGTCPTCR 1184
>Q91ZV7:PXDC1_MOUSE Plexin domain-containing protein 1 precursor - Mus musculus (Mouse)| Length = 500 Score = 35.0 bits (79), Expect = 0.83 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = -1 Query: 748 YHRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHSWNWTIDCSHC*DWGHHHCWSSAYS 569 YHR+++ ++ A F P CL H S N T +CS C H S Sbjct: 281 YHRVELDSSKITTTSAVEFTPLPTCLQHQSCDTCVSSNLTFNCSWC------HVLQRCSS 334 Query: 568 ERSRRLESCLNKGCA*VSQGR 506 R + L GCA ++G+ Sbjct: 335 GFDRYRQEWLTYGCAQEAEGK 355
>Q1XHU0:TRI39_PANTR Tripartite motif-containing protein 39 - Pan troglodytes (Chimpanzee)| Length = 518 Score = 30.4 bits (67), Expect(2) = 1.3 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 964 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 1134 +AA L + SC +C E L + CG + C C R LE D CP CRK Sbjct: 16 TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71 Score = 22.7 bits (47), Expect(2) = 1.3 Identities = 7/31 (22%), Positives = 15/31 (48%) Frame = +2 Query: 1208 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 1300 ++D LC + ++ FC+ +C C + Sbjct: 101 IRDESLCPQHHEALSLFCYEDQEAVCLICAI 131
>Q9HCM9:TRI39_HUMAN Tripartite motif-containing protein 39 - Homo sapiens (Human)| Length = 518 Score = 30.4 bits (67), Expect(2) = 1.3 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 964 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 1134 +AA L + SC +C E L + CG + C C R LE D CP CRK Sbjct: 16 TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71 Score = 22.7 bits (47), Expect(2) = 1.3 Identities = 7/31 (22%), Positives = 15/31 (48%) Frame = +2 Query: 1208 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 1300 ++D LC + ++ FC+ +C C + Sbjct: 101 IRDESLCPQHHEALSLFCYEDQEAVCLICAI 131
>Q8IUK5:PXDC1_HUMAN Plexin domain-containing protein 1 precursor - Homo sapiens (Human)| Length = 500 Score = 34.3 bits (77), Expect = 1.4 Identities = 22/81 (27%), Positives = 35/81 (43%) Frame = -1 Query: 748 YHRLKVHQQQLPNHPAPRFPPQGRCLCHHPRHHSHSWNWTIDCSHC*DWGHHHCWSSAYS 569 YHR+++ ++ + A F P CL H S + T +CS C H S Sbjct: 280 YHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWC------HVLQRCSS 333 Query: 568 ERSRRLESCLNKGCA*VSQGR 506 R + ++ GCA ++GR Sbjct: 334 GFDRYRQEWMDYGCAQEAEGR 354
>Q6MFZ5:TRI39_RAT Tripartite motif-containing protein 39 - Rattus norvegicus (Rat)| Length = 488 Score = 30.4 bits (67), Expect(2) = 1.7 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 964 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 1134 +AA L + SC +C E L + CG + C C R LE D CP CRK Sbjct: 16 TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71 Score = 22.3 bits (46), Expect(2) = 1.7 Identities = 7/31 (22%), Positives = 14/31 (45%) Frame = +2 Query: 1208 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 1300 ++D LC + + FC+ +C C + Sbjct: 101 IRDESLCSQHHEPLSLFCYEDQEAVCLICAI 131
>Q9ESN2:TRI39_MOUSE Tripartite motif-containing protein 39 - Mus musculus (Mouse)| Length = 488 Score = 30.4 bits (67), Expect(2) = 1.7 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 964 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRI---LEADARCPGCRK 1134 +AA L + SC +C E L + CG + C C R LE D CP CRK Sbjct: 16 TAAALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVCRK 71 Score = 22.3 bits (46), Expect(2) = 1.7 Identities = 7/31 (22%), Positives = 14/31 (45%) Frame = +2 Query: 1208 VQDTRLCEGYDSSMP*FCFACYCRICWFCCV 1300 ++D LC + + FC+ +C C + Sbjct: 101 IRDESLCSQHHEPLSLFCYEDQEAVCLICAI 131
>Q9Y4L5:ZN364_HUMAN Zinc finger protein 364 - Homo sapiens (Human)| Length = 304 Score = 33.9 bits (76), Expect = 1.9 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 976 QSILSMPLSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 Q + M L CP+C ED + LPC FH C LE CP CRK N Sbjct: 219 QEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSS--CIVPWLELHDTCPVCRKSLN 273
>Q6NUN9:ZN746_HUMAN Zinc finger protein 746 - Homo sapiens (Human)| Length = 644 Score = 33.5 bits (75), Expect = 2.4 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 13/67 (19%) Frame = +1 Query: 688 EENGVLDDWEAVADALSVDDNSHCHQSFGTTIPPT-------------ATSDSVPQANTS 828 EE L ++ A +S D S H +F TTIPPT A SD + NT+ Sbjct: 216 EEPWGLSQLDSGAGDISTDATSGVHSNFSTTIPPTSWQTDLPPHHPSSACSDGTLKLNTA 275 Query: 829 KRTEPIR 849 TE ++ Sbjct: 276 ASTEDVK 282
>Q96LD4:TRI47_HUMAN Tripartite motif-containing protein 47 - Homo sapiens (Human)| Length = 638 Score = 33.5 bits (75), Expect = 2.4 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Frame = +1 Query: 988 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC------HKRILEAD-----ARCPGCR 1131 S P SCPIC E L +P + PCG + CL C H+ A ARCP C+ Sbjct: 4 SGPFSCPICLEPLREP-----VTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQ 58 Query: 1132 K 1134 + Sbjct: 59 E 59
>O60858:TRI13_HUMAN Tripartite motif-containing protein 13 - Homo sapiens (Human)| Length = 407 Score = 33.5 bits (75), Expect = 2.4 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Frame = +1 Query: 982 ILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADAR----------CPGCR 1131 +L L+CPIC D D LPC F C C + ILE R CP CR Sbjct: 3 LLEEDLTCPICCSLFD--DPRVLPCSHNF--CKKCLEGILEGSVRNSLWRPAPFKCPTCR 58 Query: 1132 K 1134 K Sbjct: 59 K 59
>P29129:ICP0_PRVIF Trans-acting transcriptional protein ICP0 - Pseudorabies virus| (strain Indiana-Funkhauser / Becker) (PRV) Length = 410 Score = 33.5 bits (75), Expect = 2.4 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +1 Query: 904 SISKQASFPARIGNCWGM------GMSAAHQSILSMPLS---CPICYEDLDPTDSSFLPC 1056 ++S++ + A + WG+ + LS+PL+ CPIC D+ T++ LPC Sbjct: 4 TVSRRRTTTAEASSAWGIFGFYRPRSPSPPPQRLSLPLTVMDCPICL-DVAATEAQTLPC 62 Query: 1057 PCGFHLCLFCHKRILEADARCPGC 1128 CL C +R CP C Sbjct: 63 M--HKFCLDCIQRWTLTSTACPLC 84
>Q9N658:GFI1_DROME Zinc finger protein sens - Drosophila melanogaster (Fruit fly)| Length = 541 Score = 33.5 bits (75), Expect = 2.4 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = +2 Query: 917 RQASRRGLATAGEWV*VQHIRVSSRCHYLAQYAMRILTQQTQASSPALAGFICASSATRG 1096 R A GL + QH+++ S Q RI +Q Q + A A ++A G Sbjct: 291 RSAFMAGLTGNNLELLTQHLKLKSEQPQQQQQQHRIKDEQQQDNRSAAALMNLVAAAEFG 350 Query: 1097 SLRRMHVA-QGAGSYTMQGLQQKEEHQHQCAYP 1192 +R H Q + QQ ++HQHQ +P Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHP 383
>Q5ZL91:INT7_CHICK Integrator complex subunit 7 - Gallus gallus (Chicken)| Length = 961 Score = 33.1 bits (74), Expect = 3.2 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -3 Query: 1013 HIGQDNGIERIL*CAALIPIPQQLPILA-GKLACLEILGKLCGRNVSSGAQALALLRIGS 837 H QD RIL C L I QLP+LA G L L L K+ GR+ + Q L L+ + + Sbjct: 438 HSAQDAA--RILMCHCLAAIAMQLPVLADGMLGDLMELYKVIGRSTTDKKQEL-LVSLAT 494 Query: 836 VLF 828 V+F Sbjct: 495 VIF 497
>Q5UPZ3:YR311_MIMIV Putative RING finger protein R311 - Mimivirus| Length = 659 Score = 33.1 bits (74), Expect = 3.2 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 CP+CY+D D CG +CL C IL CP C + N Sbjct: 502 CPVCYDD----DYIKTKLICGHTVCLTCVLNILPNSKGCPLCMEPIN 544
>O88846:RNF4_RAT RING finger protein 4 - Rattus norvegicus (Rat)| Length = 194 Score = 33.1 bits (74), Expect = 3.2 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 997 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 +SCPIC Y ++ + CG C C + L+ CP CRK N Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 185
>Q9QZS2:RNF4_MOUSE RING finger protein 4 - Mus musculus (Mouse)| Length = 194 Score = 33.1 bits (74), Expect = 3.2 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 997 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 +SCPIC Y ++ + CG C C + L+ CP CRK N Sbjct: 134 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 185
>P78317:RNF4_HUMAN RING finger protein 4 - Homo sapiens (Human)| Length = 190 Score = 33.1 bits (74), Expect = 3.2 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 997 LSCPIC---YEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 +SCPIC Y ++ + CG C C + L+ CP CRK N Sbjct: 130 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 181
>Q8IWR1:TRI59_HUMAN Tripartite motif-containing protein 59 - Homo sapiens (Human)| Length = 403 Score = 32.7 bits (73), Expect = 4.1 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGCRKL 1137 L+CPICY + D LPC F C C + IL+A +CP CR + Sbjct: 8 LTCPICYSIFE--DPRVLPCSHTF--CRNCLENILQASGNFYIWRPLRIPLKCPNCRSI 62
>Q8T3Y0:SINAL_DROME Probable E3 ubiquitin-protein ligase sina-like CG13030 - Drosophila| melanogaster (Fruit fly) Length = 351 Score = 32.7 bits (73), Expect = 4.1 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +1 Query: 964 SAAHQSILSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 S A L L CP+C+ + P + CP G +C C ++ CP CR Sbjct: 93 SGARDDFLMALLECPVCFGYIMP---PIMQCPRGHLICSTCRSKL----TICPVCR 141
>Q4WZJ6:RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18 -| Aspergillus fumigatus (Sartorya fumigata) Length = 418 Score = 32.7 bits (73), Expect = 4.1 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 979 SILSMPLSCPICYEDLD-PTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 S L L C +C + D P +S C C C +R L + +CP CR Sbjct: 22 SPLESSLRCQVCKDFFDNPVITS-----CSHTFCSLCIRRCLSTEGKCPACR 68
>Q1RMS6:INT7_BOVIN Integrator complex subunit 7 - Bos taurus (Bovine)| Length = 962 Score = 32.3 bits (72), Expect = 5.4 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = -3 Query: 1013 HIGQDNGIERIL*CAALIPIPQQLPILA-GKLACLEILGKLCGRNVSSGAQALALLRIGS 837 H QD RIL C L I QLP+L G L L L K+ GR+ + Q L L+ + + Sbjct: 439 HSAQDTA--RILMCHCLAAIAMQLPVLGDGMLGDLVELYKVIGRSATDKQQEL-LVSLAT 495 Query: 836 VLF 828 V+F Sbjct: 496 VIF 498
>Q922Y2:TRI59_MOUSE Tripartite motif-containing protein 59 - Mus musculus (Mouse)| Length = 403 Score = 32.3 bits (72), Expect = 5.4 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGCRKL 1137 L+CPICY + D LPC F C C + +L+A +CP CR + Sbjct: 8 LTCPICYSIFE--DPRVLPCSHTF--CRNCLENVLQASGNFYIWRPLRIPLKCPNCRSI 62
>Q8C0E3:TRI47_MOUSE Tripartite motif-containing protein 47 - Mus musculus (Mouse)| Length = 641 Score = 32.3 bits (72), Expect = 5.4 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 12/61 (19%) Frame = +1 Query: 988 SMPLSCPICYEDL-DPTDSSFLPCPCGFHLCLFC------HKRI-----LEADARCPGCR 1131 S P SCPIC E L +P + PCG + CL C H+ ARCP C+ Sbjct: 4 SGPFSCPICLEPLREP-----VTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQ 58 Query: 1132 K 1134 + Sbjct: 59 E 59
>P82457:TRI18_MUSSP Midline-1 - Mus spretus (Western wild mouse)| Length = 667 Score = 32.3 bits (72), Expect = 5.4 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Frame = +1 Query: 985 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 1128 L L+CPIC E L+ L PC LC C RIL + +CP C Sbjct: 4 LESELTCPICLELLEDP----LLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTC 59 Query: 1129 R 1131 R Sbjct: 60 R 60
>Q1XDA4:TILS_PORYE tRNA(Ile)-lysidine synthase - Porphyra yezoensis| Length = 329 Score = 32.3 bits (72), Expect = 5.4 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Frame = -1 Query: 907 YWASSVDGTYHLVPKLLHCY--ESALFFLMYLLEAPSHL*LLGESWYRNSGGNDCYHRLK 734 +W+S + HLV LL+CY E++ F Y L W S N+ R + Sbjct: 151 HWSSQLSNAVHLVRPLLNCYRSETSWFCRKYFLPV----------WIDQSNYNNSLSRNR 200 Query: 733 VHQQQLPNHPAPRFPPQGRCLCH 665 + Q+ +P + F PQ C+ Sbjct: 201 LRQELIP-YIKSYFQPQIEQKCY 222
>P33288:RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18 -| Neurospora crassa Length = 501 Score = 32.3 bits (72), Expect = 5.4 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Frame = +1 Query: 985 LSMPLSC--PI-----CYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 L PL+C P+ C+ D DS L C C C +R L D++CP CR Sbjct: 18 LGTPLACLMPVEQAFRCHVCKDFYDSPMLTS-CNHTFCSLCIRRCLSVDSKCPLCR 72
>Q6CTZ8:RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18 -| Kluyveromyces lactis (Yeast) (Candida sphaerica) Length = 427 Score = 32.3 bits (72), Expect = 5.4 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 997 LSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 1128 L C IC + L + + PCG C C ++ L+ +++CP C Sbjct: 30 LRCHICKDFLKAS----VLTPCGHSFCSICIRKYLQKESKCPLC 69
>Q6G553:DNAJ_BARHE Chaperone protein dnaJ - Bartonella henselae (Rochalimaea henselae)| Length = 381 Score = 32.3 bits (72), Expect = 5.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 910 SKQASFPARIGNCWGMGMSAAHQSILSMPLSCPICY 1017 +K+ S P G C G G A Q S+ +CP+C+ Sbjct: 156 AKKGSKPQTCGTCHGAGRVRAAQGFFSIERTCPVCH 191
>Q3U133:ZN746_MOUSE Zinc finger protein 746 - Mus musculus (Mouse)| Length = 652 Score = 32.0 bits (71), Expect = 7.0 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 688 EENGVLDDWEAVADALSVDDNSHCHQSFGTTIPPTATSDSVPQANTS 828 EE L ++ A +S D S H +F TTIPPT+ +P + S Sbjct: 216 EEPWGLSQLDSGAGDISTDATSGVHSNFSTTIPPTSWQADLPPHHPS 262
>Q9D0C1:ZN364_MOUSE Zinc finger protein 364 - Mus musculus (Mouse)| Length = 305 Score = 32.0 bits (71), Expect = 7.0 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 976 QSILSMPLSCPICYEDLDPTDS-SFLPCPCGFHLCLFCHKRILEADARCPGCRKLYN 1143 Q ++ L CP+C ED + LPC FH C LE CP CRK N Sbjct: 220 QEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSS--CIVPWLELHDTCPVCRKSLN 274
>Q61510:TRI25_MOUSE Tripartite motif-containing protein 25 - Mus musculus (Mouse)| Length = 634 Score = 32.0 bits (71), Expect = 7.0 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = +1 Query: 985 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA---RCPGCRKLY 1140 L+ LSC +C E ++ PCG + C C RCP CRK+Y Sbjct: 7 LAEELSCSVCLELFKEPVTT----PCGHNFCTSCLDETWVVQGPPYRCPQCRKVY 57
>Q9R1A8:RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 - Mus musculus (Mouse)| Length = 733 Score = 32.0 bits (71), Expect = 7.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 1128 CPIC++ ++ + CG C C + LE + RCP C Sbjct: 138 CPICFDMIEEAYMT----KCGHSFCYKCIHQSLEDNNRCPKC 175
>Q8NHY2:RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 - Homo sapiens (Human)| Length = 731 Score = 32.0 bits (71), Expect = 7.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGC 1128 CPIC++ ++ + CG C C + LE + RCP C Sbjct: 136 CPICFDMIEEAYMT----KCGHSFCYKCIHQSLEDNNRCPKC 173
>P84445:ICP0_EHV1V Trans-acting transcriptional protein ICP0 - Equine herpesvirus 1| (strain V592) (EHV-1) (Equine abortion virus) Length = 532 Score = 32.0 bits (71), Expect = 7.0 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 CPIC ED P++ S + PC C C R + + CP C+ Sbjct: 8 CPICLED--PSNYS-MALPCLHAFCYVCITRWIRQNPTCPLCK 47
>P28990:ICP0_EHV1B Trans-acting transcriptional protein ICP0 - Equine herpesvirus 1| (strain Ab4p) (EHV-1) (Equine abortion virus) Length = 532 Score = 32.0 bits (71), Expect = 7.0 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +1 Query: 1003 CPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCR 1131 CPIC ED P++ S + PC C C R + + CP C+ Sbjct: 8 CPICLED--PSNYS-MALPCLHAFCYVCITRWIRQNPTCPLCK 47
>Q7X843:ATL3I_ARATH RING-H2 finger protein ATL3I - Arabidopsis thaliana (Mouse-ear cress)| Length = 349 Score = 32.0 bits (71), Expect = 7.0 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +1 Query: 985 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADARCPGCRK 1134 L P C +C + TD L C L C L +++ CP CR+ Sbjct: 201 LEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250
>Q7TQK1:INT7_MOUSE Integrator complex subunit 7 - Mus musculus (Mouse)| Length = 966 Score = 31.6 bits (70), Expect = 9.2 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = -3 Query: 1013 HIGQDNGIERIL*CAALIPIPQQLPILA-GKLACLEILGKLCGRNVSSGAQALALLRIGS 837 H QD RIL C L I QLP+L G L L L K+ GR+ + Q L L+ + + Sbjct: 439 HSSQDAA--RILMCHCLAAIAMQLPVLGDGMLGDLVELYKVIGRSATDKQQEL-LVSLAT 495 Query: 836 VLF 828 V+F Sbjct: 496 VIF 498
>Q9NVH2:INT7_HUMAN Integrator complex subunit 7 - Homo sapiens (Human)| Length = 962 Score = 31.6 bits (70), Expect = 9.2 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = -3 Query: 1013 HIGQDNGIERIL*CAALIPIPQQLPILA-GKLACLEILGKLCGRNVSSGAQALALLRIGS 837 H QD RIL C L I QLP+L G L L L K+ GR+ + Q L L+ + + Sbjct: 439 HSAQDAA--RILMCHCLAAIAMQLPVLGDGMLGDLMELYKVIGRSATDKQQEL-LVSLAT 495 Query: 836 VLF 828 V+F Sbjct: 496 VIF 498
>Q9QUS6:TRIM1_MOUSE Midline-2 - Mus musculus (Mouse)| Length = 685 Score = 31.6 bits (70), Expect = 9.2 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%) Frame = +1 Query: 985 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 1128 L L+CPIC E + L PC LC C RIL + +CP C Sbjct: 4 LESELTCPICLELFEDP----LLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTC 59 Query: 1129 R 1131 R Sbjct: 60 R 60
>Q9UJV3:TRIM1_HUMAN Midline-2 - Homo sapiens (Human)| Length = 715 Score = 31.6 bits (70), Expect = 9.2 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%) Frame = +1 Query: 985 LSMPLSCPICYEDLDPTDSSFLPCPCGFHLCLFCHKRILEADA------------RCPGC 1128 L L+CPIC E + L PC LC C RIL + +CP C Sbjct: 4 LESELTCPICLELFEDP----LLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTC 59 Query: 1129 R 1131 R Sbjct: 60 R 60 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 232,412,408 Number of extensions: 5047846 Number of successful extensions: 16311 Number of sequences better than 10.0: 55 Number of HSP's gapped: 16264 Number of HSP's successfully gapped: 59 Length of query: 502 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 385 Effective length of database: 68,593,924 Effective search space: 26408660740 Effective search space used: 26408660740 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
