ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62o20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|J03499.1|SLMMYLCCB Physarum polycephalum myosin calcium-binding light chain mRNA, 3' end Length = 519 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 91 aggagtgcttcgagatcttcgacaaggaccgtgacggcaag 131 ||||||||||| ||||||||||||||||| |||||||||| Sbjct: 20 aggagtgcttccagatcttcgacaaggacaatgacggcaag 60
>gb|DQ471452.1| Arthrobacter sp. Cjts alpha, alpha-trehalose-phosphate synthase (otsA) gene, complete cds Length = 1461 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 123 gacggcaagctcaacgtcgagga 145 ||||||||||||||||||||||| Sbjct: 928 gacggcaagctcaacgtcgagga 950
>gb|DQ200375.1| Solanum tuberosum clone 060G04 putative calmodulin-like protein mRNA, complete cds Length = 806 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgtc 482 ||||||||||||||||||||||| Sbjct: 418 agatcaactacgacgagttcgtc 440
>gb|DQ191657.1| Solanum tuberosum calmodulin 5/6/7/8-like protein mRNA, complete cds Length = 876 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgtc 482 ||||||||||||||||||||||| Sbjct: 499 agatcaactacgacgagttcgtc 521
>gb|BT013612.1| Lycopersicon esculentum clone 132384F, mRNA sequence Length = 826 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgtc 482 ||||||||||||||||||||||| Sbjct: 480 agatcaactacgacgagttcgtc 502
>emb|AJ318520.1|SCO318520 Solanum commersonii mRNA for putative calmodulin (caM1 gene) Length = 807 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgtc 482 ||||||||||||||||||||||| Sbjct: 434 agatcaactacgacgagttcgtc 456
>gb|U20295.1|STU20295 Solanum tuberosum clone PCM6 calmodulin mRNA, complete cds Length = 536 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgtc 482 ||||||||||||||||||||||| Sbjct: 485 agatcaactacgacgagttcgtc 507
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 107 cttcgacaaggaccgtgacggc 128 |||||||||||||||||||||| Sbjct: 5969186 cttcgacaaggaccgtgacggc 5969165
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 tcgtcgccgagcttggcggtga 226 |||||||||||||||||||||| Sbjct: 1301669 tcgtcgccgagcttggcggtga 1301690
>ref|XM_504118.1| Yarrowia lipolytica CLIB122, YALI0E18766g predicted mRNA Length = 2496 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 cgaggtcgaccagctcatcaag 434 |||||||||||||||||||||| Sbjct: 147 cgaggtcgaccagctcatcaag 168
>gb|AY354092.1| Uncultured bacterium clone DSR-E1 dissimilatory sulfite reductase beta subunit (dsrB) gene, partial cds Length = 767 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 429 atcaagaacgtcaaggttaacgctga 454 ||||||| |||||||||||||||||| Sbjct: 712 atcaagaccgtcaaggttaacgctga 737
>ref|XM_756067.1| Ustilago maydis 521 hypothetical protein (UM05013.1) partial mRNA Length = 3525 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 577 aagcgaggagcttggcgccggg 598 |||||||||||||||||||||| Sbjct: 1186 aagcgaggagcttggcgccggg 1165
>gb|AF493614.1| Acetabularia acetabulum calmodulin 2 mRNA, partial cds Length = 240 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 315 gaggccttcaaggccctcgacaaggacggc 344 ||||||||||||| | |||||||||||||| Sbjct: 127 gaggccttcaaggtcttcgacaaggacggc 156
>emb|X77397.1|ZMCAM2 Z.mays CaM2 mRNA for calmodulin Length = 775 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 460 agatcaactacgacgagttcgt 481 |||||||||||||||||||||| Sbjct: 478 agatcaactacgacgagttcgt 499
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 cgaggtcgaccagctcatcaag 434 |||||||||||||||||||||| Sbjct: 2237803 cgaggtcgaccagctcatcaag 2237824
>gb|AC003043.2| Homo sapiens chromosome 17, clone RP5-1067M6, complete sequence Length = 139486 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 cccagcaccagcacacatggc 40 ||||||||||||||||||||| Sbjct: 74972 cccagcaccagcacacatggc 74952
>ref|NM_001066576.1| Oryza sativa (japonica cultivar-group) Os07g0569800 (Os07g0569800) mRNA, complete cds Length = 1957 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 acggccgcggcaccatcctcgaggc 364 ||||||||||| ||||||||||||| Sbjct: 1432 acggccgcggcgccatcctcgaggc 1456
>gb|CP000449.1| Maricaulis maris MCS10, complete genome Length = 3368780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 cttcgacaaggaccgtgacgg 127 ||||||||||||||||||||| Sbjct: 3347521 cttcgacaaggaccgtgacgg 3347501
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 332 cgacaaggacggccgcggcaccatcctcgaggc 364 ||||||||| | ||||||||||||| ||||||| Sbjct: 1788672 cgacaaggaagcccgcggcaccatcgtcgaggc 1788704
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence Length = 209280 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 caagaagtacaagaagcccca 292 ||||||||||||||||||||| Sbjct: 145009 caagaagtacaagaagcccca 145029
>dbj|AK123330.1| Homo sapiens cDNA FLJ41336 fis, clone BRAMY3000213, highly similar to Homo sapiens RaP2 interacting protein 8 (RPIP8) mRNA Length = 3686 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 cccagcaccagcacacatggc 40 ||||||||||||||||||||| Sbjct: 1257 cccagcaccagcacacatggc 1277
>ref|XM_383671.1| Gibberella zeae PH-1 chromosome 2 predicted protein (FG03495.1) partial mRNA Length = 882 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 gacgagttcgtcgatctcctg 491 ||||||||||||||||||||| Sbjct: 597 gacgagttcgtcgatctcctg 577
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 tcgaccagctcatcaagaacg 438 ||||||||||||||||||||| Sbjct: 5249852 tcgaccagctcatcaagaacg 5249872
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete sequence Length = 209619 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 caagaagtacaagaagcccca 292 ||||||||||||||||||||| Sbjct: 75329 caagaagtacaagaagcccca 75349
>gb|AY585925.1| Paxillus involutus strain ATCC 200175 calmodulin (calA) mRNA, complete cds Length = 728 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 atcaactacgacgagttcgtc 482 ||||||||||||||||||||| Sbjct: 505 atcaactacgacgagttcgtc 525
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 acggccgcggcaccatcctcgaggc 364 ||||||||||| ||||||||||||| Sbjct: 22883474 acggccgcggcgccatcctcgaggc 22883498
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 acggccgcggcaccatcctcgaggc 364 ||||||||||| ||||||||||||| Sbjct: 76741 acggccgcggcgccatcctcgaggc 76765
>dbj|AK108637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-H04, full insert sequence Length = 1957 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 acggccgcggcaccatcctcgaggc 364 ||||||||||| ||||||||||||| Sbjct: 1432 acggccgcggcgccatcctcgaggc 1456
>dbj|AP004948.1| Lotus japonicus genomic DNA, chromosome , clone:LjT35I07, TM0121b, complete sequence Length = 56086 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gacaaggaccgtgacggcaagctca 135 ||||||||| ||||||||||||||| Sbjct: 44885 gacaaggacggtgacggcaagctca 44861
>gb|DQ180313.1| Fragaria x ananassa clone PBCESTFXA8 SSR marker Length = 728 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 gccttcaaggccctcgacaaggacg 342 |||||||||| |||||||||||||| Sbjct: 303 gccttcaaggtcctcgacaaggacg 327
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 cgacaaggacggccgcggcaccatc 356 |||||||| |||||||||||||||| Sbjct: 1269399 cgacaaggccggccgcggcaccatc 1269423
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 tgacggcaagctcaacgtcgagga 145 ||||||||||||||| |||||||| Sbjct: 2326789 tgacggcaagctcaaggtcgagga 2326766
>ref|XM_001228905.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_02390) mRNA, complete cds Length = 438 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 321 ttcaaggccctcgacaaggacggccgcggcaccatc 356 ||||||| | |||| ||||||||| ||||||||||| Sbjct: 316 ttcaaggtcttcgataaggacggcagcggcaccatc 351
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 6253015 gccccaggagcaggagcgcg 6253034
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cgacgagttcgtcgatctcc 489 |||||||||||||||||||| Sbjct: 1697737 cgacgagttcgtcgatctcc 1697718
>ref|XM_001109588.1| PREDICTED: Macaca mulatta similar to uncharacterized protein family UPF0227 member RGD1359682 (LOC717757), mRNA Length = 2544 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 581 gaggagcttggcgccggggctggg 604 |||||||| ||||||||||||||| Sbjct: 370 gaggagctgggcgccggggctggg 347
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 cctcgacaaggacggccgcg 348 |||||||||||||||||||| Sbjct: 1760243 cctcgacaaggacggccgcg 1760262
>ref|NM_167072.1| Drosophila melanogaster lethal (1) G0030 CG3861-RB, transcript variant B (l(1)G0030), mRNA Length = 2506 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 407 gccccaggagcaggagcgcg 426
>ref|NM_132091.2| Drosophila melanogaster lethal (1) G0030 CG3861-RA, transcript variant A (l(1)G0030), mRNA Length = 2381 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 282 gccccaggagcaggagcgcg 301
>gb|DQ120791.1| Triticum aestivum STK protein kinase gene, partial cds Length = 507 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gtcgccgagcttggcggtga 226 |||||||||||||||||||| Sbjct: 423 gtcgccgagcttggcggtga 404
>dbj|AB232582.1| Rhodococcus erythropolis fabD, acpM, kasA/B, accD6 genes for probable malonyl CoA-acyl carrier protein transacylase, probable acyl carrier protein, probable beta-ketoacyl-acp synthase, probable acetyl/propinoyl-CoA carboxylase, partial and complete cds Length = 3052 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ttcgacaaggaccgtgacgg 127 |||||||||||||||||||| Sbjct: 1484 ttcgacaaggaccgtgacgg 1503
>gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187772 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 12649 gccccaggagcaggagcgcg 12668
>gb|AC023710.5| Drosophila melanogaster X BAC RP98-19D3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 189976 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 134785 gccccaggagcaggagcgcg 134804
>gb|AY089318.1| Drosophila melanogaster AT12538 full insert cDNA Length = 1963 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gccccaggagcaggagcgcg 306 |||||||||||||||||||| Sbjct: 407 gccccaggagcaggagcgcg 426
>gb|AC008819.7| Homo sapiens chromosome 5 clone CTD-2126M20, complete sequence Length = 116845 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 408 gcctacgaggtcgaccagctcatcaaga 435 ||||||||||| |||| ||||||||||| Sbjct: 82208 gcctacgaggttgacctgctcatcaaga 82235
>gb|AC034238.4| Homo sapiens chromosome 5 clone CTD-2313F11, complete sequence Length = 117583 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 408 gcctacgaggtcgaccagctcatcaaga 435 ||||||||||| |||| ||||||||||| Sbjct: 9682 gcctacgaggttgacctgctcatcaaga 9655
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 acgtccgcgcccttggccgc 176 |||||||||||||||||||| Sbjct: 337794 acgtccgcgcccttggccgc 337813
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtcgccgagcttggcggtga 226 |||||||||||||||||||| Sbjct: 42713 gtcgccgagcttggcggtga 42732
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 cggcaagctcaacgtcgaggagct 148 |||||||||||||||| ||||||| Sbjct: 383188 cggcaagctcaacgtcaaggagct 383211
>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains three novel genes, the 5' end of the Galnt9 gene for UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 9 and a CpG island, complete sequence Length = 198647 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gaagccccaggagcaggagc 303 |||||||||||||||||||| Sbjct: 335 gaagccccaggagcaggagc 354
>emb|AL772169.3| Mouse DNA sequence from clone RP23-115H17 on chromosome 11, complete sequence Length = 3994 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gaagccccaggagcaggagc 303 |||||||||||||||||||| Sbjct: 2329 gaagccccaggagcaggagc 2348
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 190 cggacatcaaggccctcgtcgccgagct 217 |||| |||||||||| |||||||||||| Sbjct: 4984095 cggatatcaaggcccgcgtcgccgagct 4984122
>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon cluster Length = 249555 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 cctcaccaaccttggtgaga 399 |||||||||||||||||||| Sbjct: 63068 cctcaccaaccttggtgaga 63049
>ref|XM_959935.1| Neurospora crassa OR74A hypothetical protein (NCU07481.1) partial mRNA Length = 3282 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 catcaaggccctcgtcgccgagct 217 ||||||||||| |||||||||||| Sbjct: 3183 catcaaggcccgcgtcgccgagct 3206
>ref|XM_952230.1| Neurospora crassa OR74A 40S RIBOSOMAL PROTEIN S12 (NCU06432.1) partial mRNA Length = 399 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cgtgaggccttcaaggccctcgac 335 |||||||||| ||||||||||||| Sbjct: 106 cgtgaggcctccaaggccctcgac 129
>dbj|AB017515.1| Marchantia polymorpha gene for calcium-dependent protein kinase, complete cds Length = 5560 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 atcaactacgacgagttcgt 481 |||||||||||||||||||| Sbjct: 5261 atcaactacgacgagttcgt 5280
>dbj|AB017517.1| Marchantia polymorpha mRNA for calcium-dependent protein kinase (CDPK-B), complete cds Length = 1647 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 atcaactacgacgagttcgt 481 |||||||||||||||||||| Sbjct: 1525 atcaactacgacgagttcgt 1544
>dbj|AB017516.1| Marchantia polymorpha mRNA for calcium-dependent protein kinase (CDPK-A), complete cds Length = 1647 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 atcaactacgacgagttcgt 481 |||||||||||||||||||| Sbjct: 1525 atcaactacgacgagttcgt 1544
>dbj|D84449.1|DVUATPASE Desulfovibrio vulgaris genes for proton ATPase gamma subunit and proton ATPase beta subunit, partial cds and complete cds Length = 1665 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 aagtacaagaagccccaggagcag 299 ||||||||||||| |||||||||| Sbjct: 1560 aagtacaagaagcgccaggagcag 1583
>dbj|AB022018.1| Desulfovibrio vulgaris genes for F1-ATPase, complete cds Length = 5506 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 aagtacaagaagccccaggagcag 299 ||||||||||||| |||||||||| Sbjct: 5020 aagtacaagaagcgccaggagcag 5043 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 80,587,752 Number of extensions: 4125376 Number of successful extensions: 128749 Number of sequences better than 10.0: 60 Number of HSP's gapped: 128749 Number of HSP's successfully gapped: 60 Length of query: 637 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 615 Effective length of database: 18,508,616,841 Effective search space: 11382799357215 Effective search space used: 11382799357215 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
