ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf62o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1Q9FDZ9:RL212_ARATH 60S ribosomal protein L21-2 - Arabidopsis tha... 84 3e-16
2Q43291:RL211_ARATH 60S ribosomal protein L21-1 - Arabidopsis tha... 84 3e-16
3P41385:TBB_BOMMO Tubulin beta chain - Bombyx mori (Silk moth) 29 7.8 
>Q9FDZ9:RL212_ARATH 60S ribosomal protein L21-2 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 164
 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 38/42 (90%), Positives = 39/42 (92%)
 Frame = +1

Query: 73  GEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY 198
           GE ISTKRQP GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 123 GETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
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>Q43291:RL211_ARATH 60S ribosomal protein L21-1 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 164

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 38/42 (90%), Positives = 39/42 (92%)
 Frame = +1

Query: 73  GEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY 198
           GE ISTKRQP GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 123 GETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
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>P41385:TBB_BOMMO Tubulin beta chain - Bombyx mori (Silk moth)|
          Length = 450

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 189 LEIVDDIVR---DGCDCLNGGALHHEPGLG 109
           LE V D+VR   +GCDCL G  L H  G G
Sbjct: 113 LETVLDVVRKEAEGCDCLQGFQLVHSLGGG 142


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 78,546,385
Number of extensions: 1518470
Number of successful extensions: 4305
Number of sequences better than 10.0: 3
Number of HSP's gapped: 4303
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 100,686,439
Length adjustment: 105
Effective length of query: 63
Effective length of database: 71,885,464
Effective search space: 4528784232
Effective search space used: 4528784232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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