>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
complete sequence
Length = 164477
Score = 1140 bits (575), Expect = 0.0
Identities = 893/999 (89%)
Strand = Plus / Minus
Query: 1733 cagtgctgcagagcagaccgcacagagcaatttgccggcactaactgttcaagatcttgt 1792
|||||| |||||||||||| | | |||||||||||| || | || |||||||| ||||
Sbjct: 122708 cagtgccgcagagcagaccacgccgagcaatttgccagcgttcaccgttcaagagattgt 122649
Query: 1793 tattcggattaaaactaatcctggagatcccagcatacttgaaacacaggagcccctgca 1852
|| |||||||| | | ||||| | || || | |||||||||||||| ||||| || ||
Sbjct: 122648 tactcggattagatcaaatcccagtgaccctaatatacttgaaacacaagagccacttca 122589
Query: 1853 ggatttagttcgaggagtgctcaaggtactgtcatctagaacagctcctctaggtgcaaa 1912
|||||||||||||||||| | ||| |||| ||||||||||||||||| |||||||||||
Sbjct: 122588 ggatttagttcgaggagtattaaagatactctcatctagaacagctccactaggtgcaaa 122529
Query: 1913 gggctggagagcgctagttgcctatgacaagtcgaacaaaagctggttctgggttggtcc 1972
||| |||| ||| || ||| ||||||||||||| |||||||||||| | |||||||| ||
Sbjct: 122528 gggatggaaagcactggtttcctatgacaagtcaaacaaaagctggctttgggttggccc 122469
Query: 1973 actgccttctggtacttcatacagtgatcctaacgaagaaacttctgctgaggcatgggg 2032
||||||||||||| ||||| | |||||||||| |||||||||||| |||| ||||||||
Sbjct: 122468 actgccttctggttcttcagatggtgatcctaatgaagaaacttctcctgatgcatgggg 122409
Query: 2033 tataccacacaagatgcttgtgaagttggttgatgcatttgctaattggctgaaaagtgg 2092
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 122408 tataccacacaaaatgcttgtgaagttggttgacgcatttgctaactggctgaaaagtgg 122349
Query: 2093 tcaggaaacccttaagcaaataggatcccttccaccacctccagcaccaaaccctgcaaa 2152
|||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 122348 tcaggaaacccttaagcagataggatcccttccaccacctccggcaccagatcctgcaaa 122289
Query: 2153 cttggatttgaaggaaagatttaaggaccttagggcccagaaaagtctaaacacaataag 2212
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||
Sbjct: 122288 cttggatttgaaggaaaggttcaaggaccttagagcccagaaaagtctaaacacaattag 122229
Query: 2213 ccccagctctgacgaagcaagggcatatttccagcgggaggagtttttgagatactcaat 2272
|| ||||| || |||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 122228 tccaagctcggaggaagcaagagcgtatttccagcgtgaagaatttttgaggtactcaat 122169
Query: 2273 tcctgatagagcattttgctatactgctgctgatggggagaaatctattgttgctccttt 2332
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 122168 tcctgatagagccttttgctatactgctgctgatggggagaaatctatagttgctccctt 122109
Query: 2333 gcgaaggggaggtggaaagcccacatcaaaagctaggggacatcccatgctcttgcctga 2392
| ||||||||||||| ||||| ||| |||||||||||||||| ||||||||||| |||||
Sbjct: 122108 gagaaggggaggtggcaagcctacagcaaaagctaggggacaccccatgctcttacctga 122049
Query: 2393 tcgccctccgcatgtcactattctctgtcttgtaagagatgctgcttctaggttgcctgg 2452
|||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 122048 tcgcccgcctcatgtcactattctctgtcttgtaagagatgctgctgccaggttgcctgc 121989
Query: 2453 aagaactggaacaagagctgatgtttgcacacttctcaaagattcacagtacctaaatga 2512
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 121988 aagaactggaacaagagctgatgtgtgcacacttctcaaagattcacagtatctaaacca 121929
Query: 2513 ggaagaatccaataaagaggctgctgttaatcaagttgtcagtggcgctcttgatcgttt 2572
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||| |
Sbjct: 121928 cgaagaatctaataaagaggctgctgttaaccaagttgtcagcggtgctcttgatcgtct 121869
Query: 2573 gcattatgagcgtgatccttgtgtgctgtatgataatgataaaaaactgtggacctatct 2632
|||||||||||| ||||||||||| |||||||| ||||| |||||| |||||||||| ||
Sbjct: 121868 gcattatgagcgcgatccttgtgtactgtatgacaatgacaaaaaattgtggacctacct 121809
Query: 2633 gcacaggggcagagaggaggaagattttgaggatgatggcacatcatctacgaaaaagtg 2692
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 121808 gcacaggggtagagaggaggaagattttgaggatgatggcacatcgtctaccaaaaaatg 121749
Query: 2693 gaagagaccaaggaaagattcagatcccgcagatcctgg 2731
|||||||||||||||||| || ||||| ||||| |||||
Sbjct: 121748 gaagagaccaaggaaagagtcggatcctgcagaccctgg 121710
Score = 192 bits (97), Expect = 6e-45
Identities = 489/619 (78%), Gaps = 3/619 (0%)
Strand = Plus / Minus
Query: 114 ggccttcattctgaggacctgggatatgacagggatttgcccaggatccggtctcagagg 173
||||||||||| ||||| ||||| ||||||||||||||| | ||| || ||||| |||
Sbjct: 124279 ggccttcattccgaggagttgggagatgacagggatttgcgaatgattcgttctcatagg 124220
Query: 174 ccgctgttgaagccagtgaagaaggaattggccacgggctatgatatcaatccttatgga 233
|| || |||||||| |||||||||||||| | |||||||| ||| ||||||
Sbjct: 124219 ccaatgccgaagccaggaaagaaggaattggctgcaagctatgatggaaatttgtatgga 124160
Query: 234 aacaactaccatgatagccagactggttcttcttactatcatggcaggaatgccattggt 293
||||||||||| || | ||| | ||||||||||||||| ||||||||||||||| || |
Sbjct: 124159 aacaactaccacgagaaccaaaatggttcttcttactactatggcaggaatgccaatgct 124100
Query: 294 aatcagggggttaccttagcagcgtcatttgagcctctgtattccgagagcgcaaggact 353
|||||||| |||||| ||||||| ||| ||| | || |||| || | |||| || |
Sbjct: 124099 aatcagggagttaccgtagcagcagcatatgatcgtccatattttgatacagcaaagaat 124040
Query: 354 gcaaaatactcggagagagatcggatatacggcggaaaaggtgcccagaataaacctctc 413
||||| ||||| || |||||| |||| || || ||| ||||| || |||| ||||
Sbjct: 124039 gcaaagtactctgacagagattggatgtatggtggacaaggtatgtcgagtaaagctctg 123980
Query: 414 aaagtggaagagagggattggccagctggtagccatgctgatctcttaaatgactggcag 473
|||| ||| |||| ||||||||||||||||||| |||| | | | | ||||||||||||
Sbjct: 123979 aaaggggatgagatggattggccagctggtagctatgccggtagcatgaatgactggcag 123920
Query: 474 agaggtcagcctgaaggtgattacaggagcaggaggcctcaagttggtcatggtgttaag 533
||||| ||| ||| ||| |||||||||||||| | |||||| |||||||||| | |||
Sbjct: 123919 agagggcagtctgcaggcgattacaggagcagaaaaactcaagctggtcatggtctgaag 123860
Query: 534 gttaagtcctataagagtattgagcagcagataaatggtgctcgttctggatctgatcct 593
|||||||| ||||| ||||||||| | || || | || ||| || ||| ||||||| |
Sbjct: 123859 gttaagtcttataaaagtattgagaaacaaattagtgatgcaaattttgggtctgatcat 123800
Query: 594 agaggcaagataccgcaggggaagattaatgtgaactccaatagccatcatggtaggatt 653
|||||||||||||| ||||||||| || | || |||| ||| || ||| || |||
Sbjct: 123799 agaggcaagatacc---ggggaagatcaaaggtaaatccactagtcagtatgacagaatt 123743
Query: 654 ggccagaaggactccaggagcaaagctgcccatgttcagagtgaggagacggaatctgat 713
||||||||| |||| |||||||| |||| | | ||||||||||||||| ||||| |||
Sbjct: 123742 ggccagaagtactcgaggagcaatgctgtctacactcagagtgaggagacagaatccgat 123683
Query: 714 tcatcagaacggtttgaag 732
||||| ||| ||||||||
Sbjct: 123682 tcatcggaaaagtttgaag 123664
Score = 139 bits (70), Expect = 8e-29
Identities = 142/166 (85%)
Strand = Plus / Minus
Query: 1347 gatgcagttactgtagcggaaccagctcctgtcgtgccagaagttattgtggtgccagta 1406
||||||||| ||||| ||||||||||||||| |||||||||| | |||||| |||
Sbjct: 123064 gatgcagttgttgtagatgaaccagctcctgtcttgccagaagtaaatgtggtagtggta 123005
Query: 1407 gaacctgagaaacctaagaagaagtatgtaccaattacaccaactatccatactggcttt 1466
|||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||
Sbjct: 123004 gaacctgagaaaccaaagaaaaaatatgtaccaatcacaccaactatccacactgggttt 122945
Query: 1467 tctttctccatcgtacatcttctaactgctgttaagaaagctatgg 1512
|| ||||| || || ||||||||||||||||| | ||| |||||||
Sbjct: 122944 tcattctctattgtgcatcttctaactgctgtaaggaaggctatgg 122899
Score = 87.7 bits (44), Expect = 2e-13
Identities = 116/140 (82%)
Strand = Plus / Minus
Query: 1192 tggcaagttgcagctctgggtccaaaaggcaaaaaggaagagttgaacttacaagcctgg 1251
||||||||||||||||||| ||||||| ||| ||| |||| |||||| |||||||| ||
Sbjct: 123228 tggcaagttgcagctctggatccaaaaagcagaaaagaagggttgaagctacaagcccgg 123169
Query: 1252 atgagcatggtgagtatgccccgtctggtccaaaggtggtagagatcagtggcagctcta 1311
|| ||||||||| | || || |||| ||||||| |||| |||| ||| | ||||| |
Sbjct: 123168 ccgaacatggtgaggacgcgccatctgctccaaagttggtggagaacagcagtagctcaa 123109
Query: 1312 agaagaaaagtaaaaagaag 1331
|||||||| |||||||||||
Sbjct: 123108 agaagaaaggtaaaaagaag 123089
Score = 83.8 bits (42), Expect = 4e-12
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 1617 aagcagcctgatggggaggagaacagaaaatggttcaatagtgaggaacctggcaaaacg 1676
||||| ||||| |||||||||| ||||||||| ||||| | ||| |||| | ||||||||
Sbjct: 122869 aagcaacctgacggggaggagagcagaaaatgcttcaacaatgaagaacattgcaaaacg 122810
Query: 1677 cctcaagagccaagtgctgcagagcaagcacaac 1710
|||||||| |||||||| |||||||||| ||||
Sbjct: 122809 cctcaagatccaagtgcaacagagcaagcccaac 122776
Score = 83.8 bits (42), Expect = 4e-12
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 919 cagagcctgattatttacgtgatgtgcatgtggaggtggcgcaacagattagtgaagtga 978
||||| ||||||||||||||||||||||||| | | | |||||||||||||| |||
Sbjct: 123489 cagagtctgattatttacgtgatgtgcatgtcacagagacagaacagattagtgaaatga 123430
Query: 979 tgagacccccagcagcaaggagtgaaagaaagcg 1012
|||| || |||||||||||| |||||||||||||
Sbjct: 123429 tgaggcctccagcagcaaggggtgaaagaaagcg 123396
Score = 46.1 bits (23), Expect = 0.84
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 788 tcatagaccagcatatggtgccaaaaa 814
|||||||||||||||| ||||||||||
Sbjct: 123614 tcatagaccagcatatagtgccaaaaa 123588
Score = 44.1 bits (22), Expect = 3.3
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 tgggtgaggagtacattggaggggct 29
|||| |||||||||||||||||||||
Sbjct: 124410 tgggcgaggagtacattggaggggct 124385
>dbj|AK068561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152M24, full
insert sequence
Length = 3820
Score = 1132 bits (571), Expect = 0.0
Identities = 892/999 (89%)
Strand = Plus / Plus
Query: 1733 cagtgctgcagagcagaccgcacagagcaatttgccggcactaactgttcaagatcttgt 1792
|||||| |||||||||||| | | | |||||||||| || | || |||||||| ||||
Sbjct: 2305 cagtgccgcagagcagaccacgccgggcaatttgccagcgttcaccgttcaagagattgt 2364
Query: 1793 tattcggattaaaactaatcctggagatcccagcatacttgaaacacaggagcccctgca 1852
|| |||||||| | | ||||| | || || | |||||||||||||| ||||| || ||
Sbjct: 2365 tactcggattagatcaaatcccagtgaccctaatatacttgaaacacaagagccacttca 2424
Query: 1853 ggatttagttcgaggagtgctcaaggtactgtcatctagaacagctcctctaggtgcaaa 1912
|||||||||||||||||| | ||| |||| ||||||||||||||||| |||||||||||
Sbjct: 2425 ggatttagttcgaggagtattaaagatactctcatctagaacagctccactaggtgcaaa 2484
Query: 1913 gggctggagagcgctagttgcctatgacaagtcgaacaaaagctggttctgggttggtcc 1972
||| |||| ||| || ||| ||||||||||||| |||||||||||| | |||||||| ||
Sbjct: 2485 gggatggaaagcactggtttcctatgacaagtcaaacaaaagctggctttgggttggccc 2544
Query: 1973 actgccttctggtacttcatacagtgatcctaacgaagaaacttctgctgaggcatgggg 2032
||||||||||||| ||||| | |||||||||| |||||||||||| |||| ||||||||
Sbjct: 2545 actgccttctggttcttcagatggtgatcctaatgaagaaacttctcctgatgcatgggg 2604
Query: 2033 tataccacacaagatgcttgtgaagttggttgatgcatttgctaattggctgaaaagtgg 2092
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 2605 tataccacacaaaatgcttgtgaagttggttgacgcatttgctaactggctgaaaagtgg 2664
Query: 2093 tcaggaaacccttaagcaaataggatcccttccaccacctccagcaccaaaccctgcaaa 2152
|||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 2665 tcaggaaacccttaagcagataggatcccttccaccacctccggcaccagatcctgcaaa 2724
Query: 2153 cttggatttgaaggaaagatttaaggaccttagggcccagaaaagtctaaacacaataag 2212
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||
Sbjct: 2725 cttggatttgaaggaaaggttcaaggaccttagagcccagaaaagtctaaacacaattag 2784
Query: 2213 ccccagctctgacgaagcaagggcatatttccagcgggaggagtttttgagatactcaat 2272
|| ||||| || |||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 2785 tccaagctcggaggaagcaagagcgtatttccagcgtgaagaatttttgaggtactcaat 2844
Query: 2273 tcctgatagagcattttgctatactgctgctgatggggagaaatctattgttgctccttt 2332
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 2845 tcctgatagagccttttgctatactgctgctgatggggagaaatctatagttgctccctt 2904
Query: 2333 gcgaaggggaggtggaaagcccacatcaaaagctaggggacatcccatgctcttgcctga 2392
| ||||||||||||| ||||| ||| |||||||||||||||| ||||||||||| |||||
Sbjct: 2905 gagaaggggaggtggcaagcctacagcaaaagctaggggacaccccatgctcttacctga 2964
Query: 2393 tcgccctccgcatgtcactattctctgtcttgtaagagatgctgcttctaggttgcctgg 2452
|||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 2965 tcgcccgcctcatgtcactattctctgtcttgtaagagatgctgctgccaggttgcctgc 3024
Query: 2453 aagaactggaacaagagctgatgtttgcacacttctcaaagattcacagtacctaaatga 2512
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 3025 aagaactggaacaagagctgatgtgtgcacacttctcaaagattcacagtatctaaacca 3084
Query: 2513 ggaagaatccaataaagaggctgctgttaatcaagttgtcagtggcgctcttgatcgttt 2572
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||| |
Sbjct: 3085 cgaagaatctaataaagaggctgctgttaaccaagttgtcagcggtgctcttgatcgtct 3144
Query: 2573 gcattatgagcgtgatccttgtgtgctgtatgataatgataaaaaactgtggacctatct 2632
|||||||||||| ||||||||||| |||||||| ||||| |||||| |||||||||| ||
Sbjct: 3145 gcattatgagcgcgatccttgtgtactgtatgacaatgacaaaaaattgtggacctacct 3204
Query: 2633 gcacaggggcagagaggaggaagattttgaggatgatggcacatcatctacgaaaaagtg 2692
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 3205 gcacaggggtagagaggaggaagattttgaggatgatggcacatcgtctaccaaaaaatg 3264
Query: 2693 gaagagaccaaggaaagattcagatcccgcagatcctgg 2731
|||||||||||||||||| || ||||| ||||| |||||
Sbjct: 3265 gaagagaccaaggaaagagtcggatcctgcagaccctgg 3303
Score = 192 bits (97), Expect = 6e-45
Identities = 489/619 (78%), Gaps = 3/619 (0%)
Strand = Plus / Plus
Query: 114 ggccttcattctgaggacctgggatatgacagggatttgcccaggatccggtctcagagg 173
||||||||||| ||||| ||||| ||||||||||||||| | ||| || ||||| |||
Sbjct: 734 ggccttcattccgaggagttgggagatgacagggatttgcgaatgattcgttctcatagg 793
Query: 174 ccgctgttgaagccagtgaagaaggaattggccacgggctatgatatcaatccttatgga 233
|| || |||||||| |||||||||||||| | |||||||| ||| ||||||
Sbjct: 794 ccaatgccgaagccaggaaagaaggaattggctgcaagctatgatggaaatttgtatgga 853
Query: 234 aacaactaccatgatagccagactggttcttcttactatcatggcaggaatgccattggt 293
||||||||||| || | ||| | ||||||||||||||| ||||||||||||||| || |
Sbjct: 854 aacaactaccacgagaaccaaaatggttcttcttactactatggcaggaatgccaatgct 913
Query: 294 aatcagggggttaccttagcagcgtcatttgagcctctgtattccgagagcgcaaggact 353
|||||||| |||||| ||||||| ||| ||| | || |||| || | |||| || |
Sbjct: 914 aatcagggagttaccgtagcagcagcatatgatcgtccatattttgatacagcaaagaat 973
Query: 354 gcaaaatactcggagagagatcggatatacggcggaaaaggtgcccagaataaacctctc 413
||||| ||||| || |||||| |||| || || ||| ||||| || |||| ||||
Sbjct: 974 gcaaagtactctgacagagattggatgtatggtggacaaggtatgtcgagtaaagctctg 1033
Query: 414 aaagtggaagagagggattggccagctggtagccatgctgatctcttaaatgactggcag 473
|||| ||| |||| ||||||||||||||||||| |||| | | | | ||||||||||||
Sbjct: 1034 aaaggggatgagatggattggccagctggtagctatgccggtagcatgaatgactggcag 1093
Query: 474 agaggtcagcctgaaggtgattacaggagcaggaggcctcaagttggtcatggtgttaag 533
||||| ||| ||| ||| |||||||||||||| | |||||| |||||||||| | |||
Sbjct: 1094 agagggcagtctgcaggcgattacaggagcagaaaaactcaagctggtcatggtctgaag 1153
Query: 534 gttaagtcctataagagtattgagcagcagataaatggtgctcgttctggatctgatcct 593
|||||||| ||||| ||||||||| | || || | || ||| || ||| ||||||| |
Sbjct: 1154 gttaagtcttataaaagtattgagaaacaaattagtgatgcaaattttgggtctgatcat 1213
Query: 594 agaggcaagataccgcaggggaagattaatgtgaactccaatagccatcatggtaggatt 653
|||||||||||||| ||||||||| || | || |||| ||| || ||| || |||
Sbjct: 1214 agaggcaagatacc---ggggaagatcaaaggtaaatccactagtcagtatgacagaatt 1270
Query: 654 ggccagaaggactccaggagcaaagctgcccatgttcagagtgaggagacggaatctgat 713
||||||||| |||| |||||||| |||| | | ||||||||||||||| ||||| |||
Sbjct: 1271 ggccagaagtactcgaggagcaatgctgtctacactcagagtgaggagacagaatccgat 1330
Query: 714 tcatcagaacggtttgaag 732
||||| ||| ||||||||
Sbjct: 1331 tcatcggaaaagtttgaag 1349
Score = 139 bits (70), Expect = 8e-29
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 1347 gatgcagttactgtagcggaaccagctcctgtcgtgccagaagttattgtggtgccagta 1406
||||||||| ||||| ||||||||||||||| |||||||||| | |||||| |||
Sbjct: 1949 gatgcagttgttgtagatgaaccagctcctgtcttgccagaagtaaatgtggtagtggta 2008
Query: 1407 gaacctgagaaacctaagaagaagtatgtaccaattacaccaactatccatactggcttt 1466
|||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||
Sbjct: 2009 gaacctgagaaaccaaagaaaaaatatgtaccaatcacaccaactatccacactgggttt 2068
Query: 1467 tctttctccatcgtacatcttctaactgctgttaagaaagctatgg 1512
|| ||||| || || ||||||||||||||||| | ||| |||||||
Sbjct: 2069 tcattctctattgtgcatcttctaactgctgtaaggaaggctatgg 2114
Score = 87.7 bits (44), Expect = 2e-13
Identities = 116/140 (82%)
Strand = Plus / Plus
Query: 1192 tggcaagttgcagctctgggtccaaaaggcaaaaaggaagagttgaacttacaagcctgg 1251
||||||||||||||||||| ||||||| ||| ||| |||| |||||| |||||||| ||
Sbjct: 1785 tggcaagttgcagctctggatccaaaaagcagaaaagaagggttgaagctacaagcccgg 1844
Query: 1252 atgagcatggtgagtatgccccgtctggtccaaaggtggtagagatcagtggcagctcta 1311
|| ||||||||| | || || |||| ||||||| |||| |||| ||| | ||||| |
Sbjct: 1845 ccgaacatggtgaggacgcgccatctgctccaaagttggtggagaacagcagtagctcaa 1904
Query: 1312 agaagaaaagtaaaaagaag 1331
|||||||| |||||||||||
Sbjct: 1905 agaagaaaggtaaaaagaag 1924
Score = 83.8 bits (42), Expect = 4e-12
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 919 cagagcctgattatttacgtgatgtgcatgtggaggtggcgcaacagattagtgaagtga 978
||||| ||||||||||||||||||||||||| | | | |||||||||||||| |||
Sbjct: 1524 cagagtctgattatttacgtgatgtgcatgtcacagagacagaacagattagtgaaatga 1583
Query: 979 tgagacccccagcagcaaggagtgaaagaaagcg 1012
|||| || |||||||||||| |||||||||||||
Sbjct: 1584 tgaggcctccagcagcaaggggtgaaagaaagcg 1617
Score = 83.8 bits (42), Expect = 4e-12
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 1617 aagcagcctgatggggaggagaacagaaaatggttcaatagtgaggaacctggcaaaacg 1676
||||| ||||| |||||||||| ||||||||| ||||| | ||| |||| | ||||||||
Sbjct: 2144 aagcaacctgacggggaggagagcagaaaatgcttcaacaatgaagaacattgcaaaacg 2203
Query: 1677 cctcaagagccaagtgctgcagagcaagcacaac 1710
|||||||| |||||||| |||||||||| ||||
Sbjct: 2204 cctcaagatccaagtgcaacagagcaagcccaac 2237
Score = 46.1 bits (23), Expect = 0.84
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 788 tcatagaccagcatatggtgccaaaaa 814
|||||||||||||||| ||||||||||
Sbjct: 1399 tcatagaccagcatatagtgccaaaaa 1425
Score = 44.1 bits (22), Expect = 3.3
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tgggtgaggagtacattggaggggct 29
|||| |||||||||||||||||||||
Sbjct: 603 tgggcgaggagtacattggaggggct 628
>gb|AC103936.9| Mus musculus chromosome 9, clone RP24-361K14, complete sequence
Length = 184968
Score = 44.1 bits (22), Expect = 3.3
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3007 caagagccccagaaaagaagca 3028
||||||||||||||||||||||
Sbjct: 151791 caagagccccagaaaagaagca 151770
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 668,215,243
Number of extensions: 36208785
Number of successful extensions: 199492
Number of sequences better than 10.0: 28
Number of HSP's gapped: 199484
Number of HSP's successfully gapped: 66
Length of query: 3428
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3404
Effective length of database: 18,499,340,271
Effective search space: 62971754282484
Effective search space used: 62971754282484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)