ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf65d07 |
|---|---|
| Clone Library Name | barley_pub |
>O64847:U136_ARATH UPF0136 membrane protein At2g26240 - Arabidopsis thaliana| (Mouse-ear cress) Length = 108 Score = 42.4 bits (98), Expect = 0.002 Identities = 21/57 (36%), Positives = 38/57 (66%) Frame = +1 Query: 340 WAFTGGHSSSLFATVLQTVCAAALTIVMTIRYMKTRKVVPAGIIATISAVVLIFYVY 510 + +T + + A+ + V +AALT +M RY++TRKVVPAG+++ +S V+ Y++ Sbjct: 46 YVYTELPGNPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102
>Q8N7S2:DNJ5G_HUMAN DnaJ homolog subfamily C member 5G - Homo sapiens (Human)| Length = 189 Score = 33.1 bits (74), Expect = 1.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 18 CCCLRSCGFGGCRELTNTPEEEQGRESEKSPQGESRRSG 134 CCC C C L PE++ GR+ +++ Q + RSG Sbjct: 136 CCCFCCCCCFCCGALKPPPEQDSGRKYQQNVQSQPPRSG 174
>O22397:POT1_ARATH Potassium transporter 1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 712 Score = 32.3 bits (72), Expect = 2.5 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = +1 Query: 355 GHSSSLFATVLQTVCAAALTIVMTIRYMKTRKVVPAGIIATISAVVLIFY---VYKISKG 525 GH+ L T + V +T+VMTI + K R + + ++ L+++ VYK+ +G Sbjct: 420 GHAYGLAVTSVMLVTTCLMTLVMTIVW-KQRIITVLAFVVFFGSIELLYFSSCVYKVPEG 478 Query: 526 G 528 G Sbjct: 479 G 479
>Q8DZL1:KUP_STRA5 Probable potassium transport system protein kup - Streptococcus| agalactiae serotype V Length = 666 Score = 31.6 bits (70), Expect = 4.2 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Frame = +1 Query: 466 IIATISAVVLIFYVYKISKGG-NEVYLPVSAE*ACWMSYLLSSGVDAAFTNAKC-----P 627 I AT+ ++L+F + + G +++ P+ W ++L SG+ +F + + P Sbjct: 149 IFATLFILLLLFAIQRFGTGVIGKLFGPIMF---IWFAFLGISGLLNSFAHPEVFKAINP 205 Query: 628 YSNCELFYSCETNICLFILKHIFFPIRGA 714 Y +L +S E + +FIL IF GA Sbjct: 206 YYGLKLLFSPENHKGIFILGSIFLATTGA 234
>Q8E575:KUP_STRA3 Probable potassium transport system protein kup - Streptococcus| agalactiae serotype III Length = 666 Score = 31.6 bits (70), Expect = 4.2 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%) Frame = +1 Query: 466 IIATISAVVLIFYVYKISKGG-NEVYLPVSAE*ACWMSYLLSSGVDAAFTNAKC-----P 627 I AT+ ++L+F + + G +++ P+ W ++L SG+ +F + + P Sbjct: 149 IFATLFILLLLFAIQRFGTGVIGKLFGPIMF---IWFAFLGISGLLNSFAHPEVFKAINP 205 Query: 628 YSNCELFYSCETNICLFILKHIFFPIRGA 714 Y +L +S E + +FIL IF GA Sbjct: 206 YYGLKLLFSPENHKGIFILGSIFLATTGA 234
>P56983:TM14A_MOUSE Transmembrane protein 14A - Mus musculus (Mouse)| Length = 99 Score = 31.2 bits (69), Expect = 5.5 Identities = 10/30 (33%), Positives = 24/30 (80%) Frame = +1 Query: 409 LTIVMTIRYMKTRKVVPAGIIATISAVVLI 498 L +M +R+ +++KV+PAG++A +S ++++ Sbjct: 63 LATIMGVRFKRSKKVMPAGLVAGLSLMMIL 92
>Q37375:NU4M_ACACA NADH-ubiquinone oxidoreductase chain 4 - Acanthamoeba castellanii| (Amoeba) Length = 497 Score = 30.8 bits (68), Expect = 7.1 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 18/165 (10%) Frame = +1 Query: 373 FATVLQTVCAAAL--TIVMTIRYMKTRKVVPAGIIATISAVVLIFYVYKISKGGNEVYLP 546 F ++ T+C + T TIR + +KV+ ++ +S V+L + I G V+L Sbjct: 284 FLPLVYTLCLLGIIYTCCSTIRQVDLKKVIAYASVSHMSFVILGLFTSNIQGIGGSVFLM 343 Query: 547 VSAE*ACWMSYLLSSGVDAAFTNAKCPYSNCEL----FYSCET------NICLF--ILKH 690 +S ++SSG+ F C Y + +YS ++CLF IL + Sbjct: 344 LS-------HGIVSSGL---FFCIGCVYDRYKTRILRYYSGLVSTMPIFSLCLFILILSN 393 Query: 691 IFFP----IRGALLLKRFKYPETYMADMKSHDTELCTCVVSIYNY 813 I FP G L+ + + A + + + + T V SI+ Y Sbjct: 394 ISFPGTSSFIGEFLILLGLFENNHFAALIATFSIILTAVYSIWLY 438
>Q3K107:KUP_STRA1 Probable potassium transport system protein kup - Streptococcus| agalactiae serotype Ia Length = 666 Score = 30.8 bits (68), Expect = 7.1 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Frame = +1 Query: 466 IIATISAVVLIFYVYKISKGG-NEVYLPVSAE*ACWMSYLLSSGVDAAFTNAKC-----P 627 I AT+ ++L+F + + G +++ P+ W ++L SG +F + + P Sbjct: 149 IFATLFILLLLFAIQRFGTGVIGKLFGPIMF---IWFAFLGISGFLNSFAHPEVFKAINP 205 Query: 628 YSNCELFYSCETNICLFILKHIFFPIRGA 714 Y +L +S E + +FIL IF GA Sbjct: 206 YYGLKLLFSPENHKGIFILGSIFLATTGA 234
>Q61191:HCFC1_MOUSE Host cell factor - Mus musculus (Mouse)| Length = 2045 Score = 30.8 bits (68), Expect = 7.1 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -2 Query: 207 VEVIHAVPGSSLLLPTGPGSCGKSRLIALTLPAATS 100 ++V+ VPGSS+ +PT + G+ ++ +T P AT+ Sbjct: 461 IQVLPTVPGSSISVPTAARTQGRPAVLKVTGPQATT 496
>Q68XM7:RPOC_RICTY DNA-directed RNA polymerase beta' chain - Rickettsia typhi| Length = 1372 Score = 30.4 bits (67), Expect = 9.3 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -2 Query: 264 LDVASDAAAEDHQAVRDGDVEVIHAVPGSSLLLPTGPGSCGKSRLIALTLPAATSLILSP 85 +DVA D + D +EV + G +++P G++ I + P LIL+ Sbjct: 795 VDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAIDIFHPVTNDLILNK 854 Query: 84 APL 76 L Sbjct: 855 GEL 857
>Q9ZE20:RPOC_RICPR DNA-directed RNA polymerase beta' chain - Rickettsia prowazekii| Length = 1372 Score = 30.4 bits (67), Expect = 9.3 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -2 Query: 264 LDVASDAAAEDHQAVRDGDVEVIHAVPGSSLLLPTGPGSCGKSRLIALTLPAATSLILSP 85 +DVA D + D +EV + G +++P G++ I + P LIL+ Sbjct: 795 VDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAIDIFHPVTNDLILNK 854 Query: 84 APL 76 L Sbjct: 855 GEL 857
>Q667I7:GLND_YERPS [Protein-PII] uridylyltransferase - Yersinia pseudotuberculosis| Length = 893 Score = 30.4 bits (67), Expect = 9.3 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 603 SIYTRRQEIRHPAGSLGTHWEVNLVTSLRYLVHVEYQDNCTDGSN-YSSW 457 S+ +R++I+ PA EV T LRYLV + D C N ++SW Sbjct: 562 SVTAQRRDIQDPAVIQQFSAEVQSETRLRYLVSLTVADICATNENLWNSW 611
>Q8ZH68:GLND_YERPE [Protein-PII] uridylyltransferase - Yersinia pestis| Length = 893 Score = 30.4 bits (67), Expect = 9.3 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 603 SIYTRRQEIRHPAGSLGTHWEVNLVTSLRYLVHVEYQDNCTDGSN-YSSW 457 S+ +R++I+ PA EV T LRYLV + D C N ++SW Sbjct: 562 SVTAQRRDIQDPAVIQQFSAEVQSETRLRYLVSLTVADICATNENLWNSW 611 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 135,126,555 Number of extensions: 3059089 Number of successful extensions: 9152 Number of sequences better than 10.0: 13 Number of HSP's gapped: 9150 Number of HSP's successfully gapped: 13 Length of query: 284 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 172 Effective length of database: 69,965,399 Effective search space: 12034048628 Effective search space used: 12034048628 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
