ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf65d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001057100.1| Oryza sativa (japonica cultivar-group) Os03g... 220 6e-54
2dbj|AK105133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 6e-54
3gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 100 2e-17
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 2e-17
5gb|AF523678.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA... 48 0.052
6gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) ge... 48 0.052
7ref|XM_631767.1| Dictyostelium discoideum AX4 hypothetical prote... 44 0.81
8gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome... 44 0.81
9emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 44 0.81
10emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chro... 44 0.81
11gb|AC187002.4| Canis Familiaris chromosome 2, clone XX-427N1, co... 42 3.2
12ref|XM_001087793.1| PREDICTED: Macaca mulatta similar to solute ... 42 3.2
13gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome 42 3.2
14gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 42 3.2
15dbj|AB088423.1| Bombyx mori DNA, subtelomere region, clone:#10-4... 42 3.2
16gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 42 3.2
17emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4... 42 3.2
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 3.2
19emb|AL645695.18| Mouse DNA sequence from clone RP23-453H19 on ch... 42 3.2
20gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Canc... 42 3.2
21gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 42 3.2
22emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 42 3.2 
>ref|NM_001057100.1| Oryza sativa (japonica cultivar-group) Os03g0584300 (Os03g0584300)
           mRNA, complete cds
          Length = 642
 Score =  220 bits (111), Expect = 6e-54
 Identities = 308/373 (82%), Gaps = 3/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 192 catggatgacttctacgtcaccatcccttacggcctggtggtcctcggcggcggcgtcgc 251
           |||||| || ||||||||||||||||| || |||   | |||||||| ||| ||||||||
Sbjct: 97  catggaggatttctacgtcaccatcccgtatggcgccgcggtcctcgtcgggggcgtcgc 156

                                                                       
Query: 252 tggctacgtcaagcgggggagcgtggcttcgctggccgccggagcaggattcggaggcgc 311
            |||||| ||||||| ||||||  ||| ||||||||||| || |  || ||||| |||||
Sbjct: 157 cggctacctcaagcgcgggagcaaggcatcgctggccgcgggcggcgggttcggcggcgc 216

                                                                       
Query: 312 gctcctcctcgccggcgctctcagcatctgggccttcacgggtggccattctagc---tc 368
           |||||||||||||||||| || |||  | |||||||| || | |||||  | |||   ||
Sbjct: 217 gctcctcctcgccggcgcgctgagcgccagggccttcgcgcgcggccaccccagcggctc 276

                                                                       
Query: 369 cctcttcgccaccgtcctgcagaccgtttgtgctgcagcattaacaatagtcatgacaat 428
           |||||||||| ||||||| ||||| |||||||||| |||||||||  | || |||  |||
Sbjct: 277 cctcttcgccgccgtcctccagactgtttgtgctgtagcattaactgtcgttatgggaat 336

                                                                       
Query: 429 aagatacatgaaaacaagaaaggtggtgccagctggaataattgctaccatcagtgcagt 488
           ||||||||| ||||||||||||||  |||||||||||||||||||| || |||||||| |
Sbjct: 337 aagatacatcaaaacaagaaaggtaatgccagctggaataattgctgccgtcagtgcact 396

                                                                       
Query: 489 tgtcctgatattctacgtgtacaagatatctaagggaggtaacgaggtttacctcccagt 548
           ||| |||||||||||| | ||||||||||| || || || ||  |||||||  |||||||
Sbjct: 397 tgtactgatattctacatctacaagatatcaaatggtggcaataaggtttatgtcccagt 456

                        
Query: 549 gagtgccgagtga 561
           ||| || ||||||
Sbjct: 457 gagcgcggagtga 469
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>dbj|AK105133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H11, full
           insert sequence
          Length = 642

 Score =  220 bits (111), Expect = 6e-54
 Identities = 308/373 (82%), Gaps = 3/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 192 catggatgacttctacgtcaccatcccttacggcctggtggtcctcggcggcggcgtcgc 251
           |||||| || ||||||||||||||||| || |||   | |||||||| ||| ||||||||
Sbjct: 97  catggaggatttctacgtcaccatcccgtatggcgccgcggtcctcgtcgggggcgtcgc 156

                                                                       
Query: 252 tggctacgtcaagcgggggagcgtggcttcgctggccgccggagcaggattcggaggcgc 311
            |||||| ||||||| ||||||  ||| ||||||||||| || |  || ||||| |||||
Sbjct: 157 cggctacctcaagcgcgggagcaaggcatcgctggccgcgggcggcgggttcggcggcgc 216

                                                                       
Query: 312 gctcctcctcgccggcgctctcagcatctgggccttcacgggtggccattctagc---tc 368
           |||||||||||||||||| || |||  | |||||||| || | |||||  | |||   ||
Sbjct: 217 gctcctcctcgccggcgcgctgagcgccagggccttcgcgcgcggccaccccagcggctc 276

                                                                       
Query: 369 cctcttcgccaccgtcctgcagaccgtttgtgctgcagcattaacaatagtcatgacaat 428
           |||||||||| ||||||| ||||| |||||||||| |||||||||  | || |||  |||
Sbjct: 277 cctcttcgccgccgtcctccagactgtttgtgctgtagcattaactgtcgttatgggaat 336

                                                                       
Query: 429 aagatacatgaaaacaagaaaggtggtgccagctggaataattgctaccatcagtgcagt 488
           ||||||||| ||||||||||||||  |||||||||||||||||||| || |||||||| |
Sbjct: 337 aagatacatcaaaacaagaaaggtaatgccagctggaataattgctgccgtcagtgcact 396

                                                                       
Query: 489 tgtcctgatattctacgtgtacaagatatctaagggaggtaacgaggtttacctcccagt 548
           ||| |||||||||||| | ||||||||||| || || || ||  |||||||  |||||||
Sbjct: 397 tgtactgatattctacatctacaagatatcaaatggtggcaataaggtttatgtcccagt 456

                        
Query: 549 gagtgccgagtga 561
           ||| || ||||||
Sbjct: 457 gagcgcggagtga 469
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
             sequence
          Length = 190055

 Score = 99.6 bits (50), Expect = 2e-17
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                         
Query: 192   catggatgacttctacgtcaccatcccttacggcctggtggtcctcggcggcggcgtcgc 251
             |||||| || ||||||||||||||||| || |||   | |||||||| ||| ||||||||
Sbjct: 42863 catggaggatttctacgtcaccatcccgtatggcgccgcggtcctcgtcgggggcgtcgc 42922

                                                                         
Query: 252   tggctacgtcaagcgggggagcgtggcttcgctggccgccggagcaggattcggaggcgc 311
              |||||| ||||||| ||||||  ||| ||||||||||| || |  || ||||| |||||
Sbjct: 42923 cggctacctcaagcgcgggagcaaggcatcgctggccgcgggcggcgggttcggcggcgc 42982

                               
Query: 312   gctcctcctcgccggcgc 329
             ||||||||||||||||||
Sbjct: 42983 gctcctcctcgccggcgc 43000



 Score = 81.8 bits (41), Expect = 4e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 394   gtttgtgctgcagcattaacaatagtcatgacaataagatacatgaaaacaagaaaggtg 453
             |||||||||| |||||||||  | || |||  |||||||||||| |||||||||||||| 
Sbjct: 44544 gtttgtgctgtagcattaactgtcgttatgggaataagatacatcaaaacaagaaaggta 44603

                                  
Query: 454   gtgccagctggaataattgct 474
              ||||||||||||||||||||
Sbjct: 44604 atgccagctggaataattgct 44624



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                         
Query: 480   cagtgcagttgtcctgatattctacgtgtacaagatatctaagggaggtaacgaggttta 539
             ||||||| |||| |||||||||||| | ||||||||||| || || || ||  |||||||
Sbjct: 45076 cagtgcacttgtactgatattctacatctacaagatatcaaatggtggcaataaggttta 45135

                                   
Query: 540   cctcccagtgagtgccgagtga 561
               |||||||||| || ||||||
Sbjct: 45136 tgtcccagtgagcgcggagtga 45157
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 99.6 bits (50), Expect = 2e-17
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                            
Query: 192      catggatgacttctacgtcaccatcccttacggcctggtggtcctcggcggcggcgtcgc 251
                |||||| || ||||||||||||||||| || |||   | |||||||| ||| ||||||||
Sbjct: 21342981 catggaggatttctacgtcaccatcccgtatggcgccgcggtcctcgtcgggggcgtcgc 21343040

                                                                            
Query: 252      tggctacgtcaagcgggggagcgtggcttcgctggccgccggagcaggattcggaggcgc 311
                 |||||| ||||||| ||||||  ||| ||||||||||| || |  || ||||| |||||
Sbjct: 21343041 cggctacctcaagcgcgggagcaaggcatcgctggccgcgggcggcgggttcggcggcgc 21343100

                                  
Query: 312      gctcctcctcgccggcgc 329
                ||||||||||||||||||
Sbjct: 21343101 gctcctcctcgccggcgc 21343118



 Score = 81.8 bits (41), Expect = 4e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                            
Query: 394      gtttgtgctgcagcattaacaatagtcatgacaataagatacatgaaaacaagaaaggtg 453
                |||||||||| |||||||||  | || |||  |||||||||||| |||||||||||||| 
Sbjct: 21344662 gtttgtgctgtagcattaactgtcgttatgggaataagatacatcaaaacaagaaaggta 21344721

                                     
Query: 454      gtgccagctggaataattgct 474
                 ||||||||||||||||||||
Sbjct: 21344722 atgccagctggaataattgct 21344742



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                            
Query: 480      cagtgcagttgtcctgatattctacgtgtacaagatatctaagggaggtaacgaggttta 539
                ||||||| |||| |||||||||||| | ||||||||||| || || || ||  |||||||
Sbjct: 21345194 cagtgcacttgtactgatattctacatctacaagatatcaaatggtggcaataaggttta 21345253

                                      
Query: 540      cctcccagtgagtgccgagtga 561
                  |||||||||| || ||||||
Sbjct: 21345254 tgtcccagtgagcgcggagtga 21345275
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>gb|AF523678.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 gene, complete
           cds; alternatively spliced
          Length = 13525

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 712 gctttattacttaaaagatttaag 735
           ||||||||||||||||||||||||
Sbjct: 914 gctttattacttaaaagatttaag 891
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>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and
            MLA1 (Mla1) gene, complete cds
          Length = 18958

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 712  gctttattacttaaaagatttaag 735
            ||||||||||||||||||||||||
Sbjct: 8989 gctttattacttaaaagatttaag 8966
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>ref|XM_631767.1| Dictyostelium discoideum AX4 hypothetical protein
           (DDBDRAFT_0187793) mRNA, complete cds
          Length = 798

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 436 atgaaaacaagaaaggtggtgc 457
           ||||||||||||||||||||||
Sbjct: 344 atgaaaacaagaaaggtggtgc 365
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>gb|AC157998.2| Mus musculus BAC clone RP23-27L18 from chromosome 9, complete sequence
          Length = 253762

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 717   attacttaaaagatttaagtat 738
             ||||||||||||||||||||||
Sbjct: 53755 attacttaaaagatttaagtat 53734
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 303    cggaggcgcgctcctcctcgccggcg 328
              ||||||| ||||||||||||||||||
Sbjct: 234039 cggaggcccgctcctcctcgccggcg 234014
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>emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chromosome 4, complete
             sequence
          Length = 228767

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 432   atacatgaaaacaagaaaggtg 453
             ||||||||||||||||||||||
Sbjct: 85182 atacatgaaaacaagaaaggtg 85161
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>gb|AC187002.4| Canis Familiaris chromosome 2, clone XX-427N1, complete sequence
          Length = 190772

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   ggtggggagcaggagggagga 180
             |||||||||||||||||||||
Sbjct: 46788 ggtggggagcaggagggagga 46768
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>ref|XM_001087793.1| PREDICTED: Macaca mulatta similar to solute carrier family 34
           (sodium phosphate), member 3, transcript variant 2
           (LOC705192), mRNA
          Length = 2127

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 162 tggggagcaggagggaggatccggg 186
           |||| ||||||||||||||||||||
Sbjct: 130 tgggcagcaggagggaggatccggg 154
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>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
          Length = 3225748

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 307     ggcgcgctcctcctcgccggc 327
               |||||||||||||||||||||
Sbjct: 2315098 ggcgcgctcctcctcgccggc 2315118
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>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 630   tagtaactgtgaattatttta 650
             |||||||||||||||||||||
Sbjct: 65416 tagtaactgtgaattatttta 65396
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>dbj|AB088423.1| Bombyx mori DNA, subtelomere region, clone:#10-48-65
          Length = 2965

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 304  ggaggcgcgctcctcctcgccggcgctct 332
            ||||||||||||||||||| || ||||||
Sbjct: 2265 ggaggcgcgctcctcctcgtcgtcgctct 2237
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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 630   tagtaactgtgaattatttta 650
             |||||||||||||||||||||
Sbjct: 12970 tagtaactgtgaattatttta 12990
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>emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4A, KEAP1, EDG8 and
             APG4D genes and partial FLJ12949 gene
          Length = 185331

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   ggtggggagcaggagggagga 180
             |||||||||||||||||||||
Sbjct: 14855 ggtggggagcaggagggagga 14875
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 222     cggcctggtggtcctcggcggcggc 246
               |||||| ||||||||||||||||||
Sbjct: 7413145 cggcctcgtggtcctcggcggcggc 7413121
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>emb|AL645695.18| Mouse DNA sequence from clone RP23-453H19 on chromosome 11 Contains the
              Pctp gene for phosphatidylcholine transfer protein,
              complete sequence
          Length = 142743

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     aagaggagcaggggagagaat 96
              |||||||||||||||||||||
Sbjct: 128319 aagaggagcaggggagagaat 128339
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>gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101061

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 627   atatagtaactgtgaattatt 647
             |||||||||||||||||||||
Sbjct: 44818 atatagtaactgtgaattatt 44798
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 586     tcttctggtgtagatgctgccttta 610
               ||||||||||||| |||||||||||
Sbjct: 1807919 tcttctggtgtagttgctgccttta 1807943
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 447    aaaggtggtgccagctggaat 467
              |||||||||||||||||||||
Sbjct: 554341 aaaggtggtgccagctggaat 554321


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 153,519,702
Number of extensions: 9083770
Number of successful extensions: 218315
Number of sequences better than 10.0: 22
Number of HSP's gapped: 218309
Number of HSP's successfully gapped: 28
Length of query: 853
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 831
Effective length of database: 18,508,616,841
Effective search space: 15380660594871
Effective search space used: 15380660594871
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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