ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62n07 |
|---|---|
| Clone Library Name | barley_pub |
>Q55880:Y098_SYNY3 UPF0063 protein sll0098 - Synechocystis sp. (strain PCC 6803)| Length = 350 Score = 233 bits (594), Expect = 8e-61 Identities = 118/213 (55%), Positives = 149/213 (69%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNKELKIGQR 182 GF RNL+ HEIV+QVL ++E F RV+NVVFMGMGEP+LNL V++A +CLN+ + IGQR Sbjct: 126 GFIRNLESHEIVDQVLTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQR 185 Query: 183 MMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALMDDCKNYF 362 +TISTVG+P I +LA LQ T AVSLHAPNQ LR++++PSA+ YPLE L+ DC+ Y Sbjct: 186 ALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYV 245 Query: 363 LETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEGSEYKRPYRKA 542 TGRRV+FEY LLAG+ND+ G HVNLIPYNP+ +Y+RP Sbjct: 246 ETTGRRVTFEYVLLAGVNDQPVHAEELAQKLR--GFQTHVNLIPYNPISEVDYQRPTEAQ 303 Query: 543 IQAFVDALESRKITVSVRQTRGLDANAACGQLR 641 I F L +I VSVR +RG+ A+AACGQLR Sbjct: 304 INQFAQVLSDHRIAVSVRYSRGVQADAACGQLR 336
>O34617:YLON_BACSU UPF0063 protein yloN - Bacillus subtilis| Length = 363 Score = 150 bits (380), Expect = 5e-36 Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFKH---RVTNVVFMGMGEPMLNLKAVLEAHQCLN--KEL 167 G RNL+ EIV QV+ ++++ RV++VV MG+GEP N +L + +N K L Sbjct: 139 GLKRNLEAGEIVAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL 198 Query: 168 KIGQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALMDD 347 IG R +T+ST G+ I + A ++Q A+SLHAPN +R ++P +AY L LM+ Sbjct: 199 NIGARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEA 258 Query: 348 CKNYFLETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEGSEYKR 527 K Y +TGRR+SFEY L G+ND+ G HVNLIP N V +Y R Sbjct: 259 VKYYINKTGRRISFEYGLFGGVNDQVEHAEELADLLE--GVKCHVNLIPVNYVPERDYVR 316 Query: 528 PYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQLR 641 R I AF L+SR + V++R+ +G D +AACGQLR Sbjct: 317 TPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLR 354
>O25970:Y1428_HELPY UPF0063 protein HP_1428 - Helicobacter pylori (Campylobacter| pylori) Length = 357 Score = 148 bits (374), Expect = 3e-35 Identities = 84/218 (38%), Positives = 127/218 (58%), Gaps = 3/218 (1%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFK---HRVTNVVFMGMGEPMLNLKAVLEAHQCLNKELKI 173 GF RNLK EI++Q L I+E + N+VFMGMGEP+ NL V +A + N ++I Sbjct: 136 GFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQI 195 Query: 174 GQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALMDDCK 353 + +TIST GV + I LA L LA+SLHA + + R +++P K Y +E ++++ + Sbjct: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255 Query: 354 NYFLETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEGSEYKRPY 533 + LE +RV FEY L+ +ND G VNLI +NP EGS+++RP Sbjct: 256 KWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPS 313 Query: 534 RKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNE 647 + + F D L S+ + ++R+++ LD AACGQLR + Sbjct: 314 LENARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>Q9ZJI4:YE28_HELPJ UPF0063 protein jhp_1325 - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 357 Score = 147 bits (370), Expect = 8e-35 Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 3/218 (1%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFK---HRVTNVVFMGMGEPMLNLKAVLEAHQCLNKELKI 173 GF R+LK EI++Q L I+E+ + N+VFMGMGEP+ NL V +A + N ++I Sbjct: 136 GFVRDLKASEIIQQALLIKEANNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQI 195 Query: 174 GQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALMDDCK 353 + +TIST GV + I LA L LA+SLHA + + R +++P K Y +E ++++ + Sbjct: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255 Query: 354 NYFLETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEGSEYKRPY 533 + LE +RV FEY L+ +ND G VNLI +NP EGS+++RP Sbjct: 256 KWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPS 313 Query: 534 RKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNE 647 ++ + F D L ++ + ++R+++ LD AACGQLR + Sbjct: 314 LESARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>P0A645:Y2904_MYCBO UPF0063 protein Mb2904c - Mycobacterium bovis| Length = 364 Score = 145 bits (365), Expect = 3e-34 Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 9/221 (4%) Frame = +3 Query: 3 GFARNLKGHEIVEQV----LAIEESFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNKE-- 164 G RNL EI+EQV A+ + F R++NVVFMGMGEP+ N VL A Q + Sbjct: 139 GLTRNLSTAEILEQVRAGAAALRDDFGDRLSNVVFMGMGEPLANYARVLAAVQRITARPP 198 Query: 165 --LKIGQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEAL 338 I R +T+STVG+ I LA +L TLA+SLHAP+ LR+T+VP + + Sbjct: 199 SGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEA 258 Query: 339 MDDCKNYFLETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGY-HVNLIPYNPVEGS 515 +D + Y TGRRVS EY L+ +ND+ G HVNLIP NP GS Sbjct: 259 LDAARYYANVTGRRVSIEYALIRDVNDQPWRADLLGKRLHRVLGPLAHVNLIPLNPTPGS 318 Query: 516 EYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQL 638 ++ + + FV + ++ ++ +VR TRG + +AACGQL Sbjct: 319 DWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQL 359
>P0A644:Y2880_MYCTU UPF0063 protein Rv2880c/Rv2879c/MT2947 - Mycobacterium tuberculosis| Length = 364 Score = 145 bits (365), Expect = 3e-34 Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 9/221 (4%) Frame = +3 Query: 3 GFARNLKGHEIVEQV----LAIEESFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNKE-- 164 G RNL EI+EQV A+ + F R++NVVFMGMGEP+ N VL A Q + Sbjct: 139 GLTRNLSTAEILEQVRAGAAALRDDFGDRLSNVVFMGMGEPLANYARVLAAVQRITARPP 198 Query: 165 --LKIGQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEAL 338 I R +T+STVG+ I LA +L TLA+SLHAP+ LR+T+VP + + Sbjct: 199 SGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEA 258 Query: 339 MDDCKNYFLETGRRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGY-HVNLIPYNPVEGS 515 +D + Y TGRRVS EY L+ +ND+ G HVNLIP NP GS Sbjct: 259 LDAARYYANVTGRRVSIEYALIRDVNDQPWRADLLGKRLHRVLGPLAHVNLIPLNPTPGS 318 Query: 516 EYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQL 638 ++ + + FV + ++ ++ +VR TRG + +AACGQL Sbjct: 319 DWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQL 359
>Q51385:Y3806_PSEAE UPF0063 protein PA3806 - Pseudomonas aeruginosa| Length = 379 Score = 139 bits (351), Expect = 1e-32 Identities = 91/225 (40%), Positives = 119/225 (52%), Gaps = 13/225 (5%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESF-------KHRVTNVVFMGMGEPMLNLKAVLEAHQCLNK 161 GF +L E++ QV +SF +TNVV MGMGEP+LN V+ A + Sbjct: 130 GFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVVAAMNIMMD 189 Query: 162 ELKIG--QRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEA 335 +L G +R +T+ST GV I KL + +LA+SLHAPN LR +VP K YPL Sbjct: 190 DLGYGISKRKVTLSTSGVVPMIDKLGE-VIDVSLALSLHAPNDELRNKLVPINKKYPLGM 248 Query: 336 LMDDCKNYFLETGRR--VSFEYTLLAGIND--EKXXXXXXXXXXXXCGGGYHVNLIPYNP 503 L+D C+ Y G + ++ EYTLL +ND E C +NLIP+NP Sbjct: 249 LLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPC----KINLIPFNP 304 Query: 504 VEGSEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQL 638 S Y+RP AI+ F D L V+VR TRG D +AACGQL Sbjct: 305 FPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>P36979:YFGB_ECOLI UPF0063 protein yfgB - Escherichia coli| Length = 384 Score = 125 bits (314), Expect = 2e-28 Identities = 85/229 (37%), Positives = 118/229 (51%), Gaps = 14/229 (6%) Frame = +3 Query: 3 GFARNLKGHEIVEQVL-------AIEESFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNK 161 GF RNL+ EI+ QV A + + + +TNVV MGMGEP+LNL V+ A + + Sbjct: 138 GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLD 197 Query: 162 ELKIG--QRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEA 335 + G +R +T+ST GV + KL + LA+SLHAPN +R+ IVP K Y +E Sbjct: 198 DFGFGLSKRRVTLSTSGVVPALDKLGD-MIDVALAISLHAPNDEIRDEIVPINKKYNIET 256 Query: 336 LMDDCKNYFLETGR---RVSFEYTLLAGIND--EKXXXXXXXXXXXXCGGGYHVNLIPYN 500 + + Y ++ RV+ EY +L +ND E C +NLIP+N Sbjct: 257 FLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC----KINLIPWN 312 Query: 501 PVEGSEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNE 647 P G+ Y R I F L S T VR+TRG D +AACGQL + Sbjct: 313 PFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGD 361
>P57373:Y286_BUCAI UPF0063 protein BU286 - Buchnera aphidicola subsp. Acyrthosiphon| pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 363 Score = 123 bits (309), Expect = 9e-28 Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 10/222 (4%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAI-----EESFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNKEL 167 GF RNLK EI+ Q+ E++ K +TN+VFMGMGEP+LNLK V+ A + E Sbjct: 135 GFQRNLKVSEIIAQIWQANKRLKEKNIKKNITNIVFMGMGEPLLNLKNVVSALTIILDEY 194 Query: 168 KIG--QRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALM 341 G +R +T+ST G+ + KL + + +LA+SLHAPN +R I+P + Y + +++ Sbjct: 195 GFGLSKRRVTLSTSGIVPALDKLRN-MIDVSLAISLHAPNDFIRNIIMPINRKYNISSVL 253 Query: 342 DDCKNYFLETGRR---VSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEG 512 YF + ++ EY +L IND +NLIP+N G Sbjct: 254 SSALKYFKYSNANRGGITIEYVMLDRINDSNENARQLSVLLSKIPS--KINLIPWNSFSG 311 Query: 513 SEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQL 638 + I F + L + T ++R+ RG D NAACGQL Sbjct: 312 PSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAACGQL 353
>Q89AK8:Y265_BUCBP UPF0063 protein bbp_265 - Buchnera aphidicola subsp. Baizongia| pistaciae Length = 373 Score = 120 bits (302), Expect = 6e-27 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 12/224 (5%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEE-------SFKHRVTNVVFMGMGEPMLNLKAVLEAHQCLNK 161 GF +NL EI+ QV I++ + +++TNVV MGMGEP+LNL V+ A + + Sbjct: 137 GFNKNLNVSEIIGQVWYIQKLIYFSKINITNKITNVVLMGMGEPLLNLSNVVHALRIMLD 196 Query: 162 E--LKIGQRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEA 335 E L + + +T+ST G+ + KL + + +LAVSLHA N +R ++P K Y +E+ Sbjct: 197 EFGLNMSKNHITLSTAGIVPALKKLHT-MIDVSLAVSLHASNNTIRNQLMPINKKYNIES 255 Query: 336 LMDDCKNYFLETG---RRVSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPV 506 ++ K Y + +RV+ EY +L+GIND + +NLIP+N Sbjct: 256 VLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELFNLLKSIP--HKINLIPWNHF 313 Query: 507 EGSEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQL 638 GS Y I F + L + V++R+ RG D NAACGQL Sbjct: 314 SGSNYICSNDITINNFANILIKKGCIVTIRKIRGYDINAACGQL 357
>P44665:Y365_HAEIN UPF0063 protein HI0365 - Haemophilus influenzae| Length = 390 Score = 117 bits (292), Expect = 9e-26 Identities = 81/229 (35%), Positives = 114/229 (49%), Gaps = 14/229 (6%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFKH-------RVTNVVFMGMGEPMLNLKAVLEAHQCLNK 161 GF RNL EI+ QV + + +TNVV MGMGEP+LN+ V+ A + + Sbjct: 143 GFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLD 202 Query: 162 ELKIG--QRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEA 335 + G +R +T+ST GV + L S + LA+SLHAPN LR+ IVP K Y ++ Sbjct: 203 DFAYGLSKRRVTLSTSGVVPALDNL-SKMIDVALAISLHAPNDELRDEIVPINKKYNIKT 261 Query: 336 LMDDCKNYFLETGR---RVSFEYTLLAGIND--EKXXXXXXXXXXXXCGGGYHVNLIPYN 500 L+D Y + +V+ EY +L +ND E C +NLIP+N Sbjct: 262 LIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKNTPC----KINLIPWN 317 Query: 501 PVEGSEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNE 647 P + Y + I F L TV +R+TRG D +AACGQL + Sbjct: 318 PFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGD 366
>Q8K9P5:Y275_BUCAP UPF0063 protein BUsg_275 - Buchnera aphidicola subsp. Schizaphis| graminum Length = 363 Score = 116 bits (291), Expect = 1e-25 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 10/225 (4%) Frame = +3 Query: 3 GFARNLKGHEIVEQVLAIEESFKHR-----VTNVVFMGMGEPMLNLKAVLEAHQCLNKEL 167 GF RNLK EI+ Q+ + K + +TN+VFMGMGEP+LNL V+ A + + + Sbjct: 135 GFNRNLKVSEIISQIWQANKILKEKKNNSTITNIVFMGMGEPLLNLNNVISAIKIILDKN 194 Query: 168 KIG--QRMMTISTVGVPNTISKLASHKLQSTLAVSLHAPNQRLRETIVPSAKAYPLEALM 341 G +R +T+ST G+ ++KL K+ +LA+SLHAPN +R +I+P Y +++ + Sbjct: 195 GFGLSKRRITLSTSGIVPALNKLIK-KIDVSLAISLHAPNDFIRNSIMPINMKYNIKSFL 253 Query: 342 DDCKNYFLETGRR---VSFEYTLLAGINDEKXXXXXXXXXXXXCGGGYHVNLIPYNPVEG 512 + Y + V+ EY +L GIND +NLIP+N + Sbjct: 254 NSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELGNILKKIPS--KINLIPWNFFKN 311 Query: 513 SEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNE 647 + + + I F + L + ++R+ RG D AACGQL + Sbjct: 312 ANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAACGQLTGD 356 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 161,938,612 Number of extensions: 3498056 Number of successful extensions: 8526 Number of sequences better than 10.0: 12 Number of HSP's gapped: 8483 Number of HSP's successfully gapped: 12 Length of query: 312 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 199 Effective length of database: 69,691,104 Effective search space: 13868529696 Effective search space used: 13868529696 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
