ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf71c22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.068
2dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.068
3gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome 44 1.1
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.1
5dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic D... 44 1.1
6dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, ... 44 1.1
7dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, ... 44 1.1
8gb|AC092132.2| Homo sapiens chromosome 16 clone RP11-204E4, comp... 42 4.2
9emb|Z98949.1|HS125H2 Human DNA sequence from clone CTA-125H2 on ... 42 4.2
10emb|AJ310932.1|HSA310932 Homo sapiens MYO18B gene for myosin hea... 42 4.2
11gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosom... 42 4.2
12gb|AC106796.3| Homo sapiens chromosome 16 clone RP11-429K17, com... 42 4.2
13emb|AL772160.8| Mouse DNA sequence from clone RP23-85H5 on chrom... 42 4.2

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743
 Score = 48.1 bits (24), Expect = 0.068
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 272      ccccccgccacccgcgcgccgcca 295
                ||||||||||||||||||||||||
Sbjct: 24359768 ccccccgccacccgcgcgccgcca 24359791



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>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0407A09
          Length = 103788

 Score = 48.1 bits (24), Expect = 0.068
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 272   ccccccgccacccgcgcgccgcca 295
             ||||||||||||||||||||||||
Sbjct: 89306 ccccccgccacccgcgcgccgcca 89329



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>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
          Length = 9965640

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 116     caactggctcacctactccggc 137
               ||||||||||||||||||||||
Sbjct: 5789629 caactggctcacctactccggc 5789650



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 273      cccccgccacccgcgcgccgcc 294
                ||||||||||||||||||||||
Sbjct: 16676996 cccccgccacccgcgcgccgcc 16676975



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>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1115_C05
          Length = 146585

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 273   cccccgccacccgcgcgccgcc 294
             ||||||||||||||||||||||
Sbjct: 16908 cccccgccacccgcgcgccgcc 16887



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>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete
             sequences
          Length = 224098

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 461   ccccacctacccctccccctcc 482
             ||||||||||||||||||||||
Sbjct: 19329 ccccacctacccctccccctcc 19308



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>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete
             sequences
          Length = 102671

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 461   ccccacctacccctccccctcc 482
             ||||||||||||||||||||||
Sbjct: 55997 ccccacctacccctccccctcc 55976



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>gb|AC092132.2| Homo sapiens chromosome 16 clone RP11-204E4, complete sequence
          Length = 166533

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 901  acaacaccaatgaccactcca 921
            |||||||||||||||||||||
Sbjct: 9798 acaacaccaatgaccactcca 9778



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>emb|Z98949.1|HS125H2 Human DNA sequence from clone CTA-125H2 on chromosome 22q11-12,
             complete sequence
          Length = 173513

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 920   cacttggagaaggaagggtgg 940
             |||||||||||||||||||||
Sbjct: 46939 cacttggagaaggaagggtgg 46959



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>emb|AJ310932.1|HSA310932 Homo sapiens MYO18B gene for myosin heavy chain, exons 1-44
          Length = 288888

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 920    cacttggagaaggaagggtgg 940
              |||||||||||||||||||||
Sbjct: 139520 cacttggagaaggaagggtgg 139540



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>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete sequence
          Length = 197149

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1015   tggagttcattgtaaactgca 1035
              |||||||||||||||||||||
Sbjct: 167403 tggagttcattgtaaactgca 167383



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>gb|AC106796.3| Homo sapiens chromosome 16 clone RP11-429K17, complete sequence
          Length = 168892

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 901   acaacaccaatgaccactcca 921
             |||||||||||||||||||||
Sbjct: 35641 acaacaccaatgaccactcca 35661



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>emb|AL772160.8| Mouse DNA sequence from clone RP23-85H5 on chromosome 4, complete
              sequence
          Length = 228375

 Score = 42.1 bits (21), Expect = 4.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 867    ctccagtttattcagtatgtt 887
              |||||||||||||||||||||
Sbjct: 200113 ctccagtttattcagtatgtt 200133


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 147,967,619
Number of extensions: 7259271
Number of successful extensions: 131066
Number of sequences better than 10.0: 13
Number of HSP's gapped: 131066
Number of HSP's successfully gapped: 13
Length of query: 1113
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1090
Effective length of database: 18,503,978,556
Effective search space: 20169336626040
Effective search space used: 20169336626040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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