ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf67o12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001071440.1| Oryza sativa (japonica cultivar-group) Os10g0487300 (Os10g0487300) mRNA, complete cds Length = 2139 Score = 502 bits (253), Expect = e-138 Identities = 490/569 (86%) Strand = Plus / Plus Query: 734 tgggaaactggttcaaggcgatggctgaaaagaacatacacacagagatcccttcttgta 793 ||||| ||||||| |||| |||||||||||||||||||||||| || || ||||||| || Sbjct: 701 tgggagactggtttaaggtgatggctgaaaagaacatacacaccgaaatgccttcttcta 760 Query: 794 cacaatatattccaaacttgactcttgatgggatggatataaagatggttgagaacaagc 853 |||| ||||||||||| ||||| |||||||||||||| ||| || |||| |||| ||||| Sbjct: 761 cacagtatattccaaagttgacccttgatgggatggagatacaggtggtggagatcaagc 820 Query: 854 tcatggagaattgcctagcaggccatacttttatcctgggatcatcagaaaagtataaat 913 |||| |||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| Sbjct: 821 tcatagagagctgccttgcaggctatacttttatcttggggtcatcagaaaagtataaat 880 Query: 914 ttggagagaaaatacaagagttactggaatcaactggagcaaaatatctcagcatcgagg 973 ||||||| ||| |||| | ||||||||||| ||||||||||||||||| | | || | Sbjct: 881 ttggagacaaactacatgctttactggaatctactggagcaaaatatctgcacgttgatg 940 Query: 974 agttttgtgctaacagccaggactctggagctggagacaatgaccaacaaattcttcttg 1033 |||||||||| ||||||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 941 agttttgtgcaaacagccaggactctggagctggtgaaaatgataaagatattcttcttg 1000 Query: 1034 ttcctgcaaaatctcctttggagttcagtaagatgcgtcctctatttcctttgtccaaga 1093 |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 1001 ttcctgcaaaatctcctttggaattcagtaagatacgcgggctatttcctttgtccaaga 1060 Query: 1094 tcactgacgtgaagctatttgctgctatattgtctggtcgcttggaagcagctgctattg 1153 |||| || || ||||| ||||||||||| || ||||||| ||| |||||| |||| |||| Sbjct: 1061 tcaccgatgtaaagctctttgctgctattttatctggtcacttagaagcaactgccattg 1120 Query: 1154 aaccacctgcttacatgattacatcctccaatacaacggatgaaactattgtggcggatt 1213 |||| || |||||||| || ||||||| ||| | |||||||| |||||||||| ||| | Sbjct: 1121 aaccgccagcttacattgttgcatcctcaaattcgacggatgagactattgtggtggact 1180 Query: 1214 ctgatgtcgaaactgatactgcaatgtctgatcgtactgttgctgctagcaagtctcagc 1273 ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||| | | Sbjct: 1181 ctgatgtagaaattgatactgcaacttctgatcatactgttgctgctagcaagtctgaac 1240 Query: 1274 accatattcagcatatgtctgatgataaa 1302 | || ||| ||||||| |||||||||||| Sbjct: 1241 atcacattgagcatatttctgatgataaa 1269 Score = 357 bits (180), Expect = 1e-94 Identities = 440/526 (83%), Gaps = 3/526 (0%) Strand = Plus / Plus Query: 185 tggtctgggcgctgacccccttcggcacagtgcgcggggcgcagcagtactacatctccg 244 |||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||| || Sbjct: 149 tggtgtgggcgctgacccccgtcgacacagtgcgcggggcgcagaggtgctacatcttcg 208 Query: 245 ccgccgggacgtacacggtcggccgcaaagattgcga---catcgttcaaacagaaacat 301 ||||||||||||||| ||||||||||||||||||||| ||| |||||||| || |||| Sbjct: 209 ccgccgggacgtacaaggtcggccgcaaagattgcgatgtcattgttcaaacggacacat 268 Query: 302 caatatcccgagtgcatgcggagatagcagttgaaaagatggttgcctgggagccacgtt 361 | ||||| ||||| ||||| ||||| | |||||||||||||| |||||||| |||| | Sbjct: 269 cgatatcgcgagtccatgcagagattgtggttgaaaagatggtggcctgggatccacaat 328 Query: 362 ctggtgctccagcaagcccttcatgtgttagtgtagttgatcgctcgaaatacggcacat 421 |||| || ||||| | |||||| | ||| |||||||||| ||||| || || || |||| Sbjct: 329 ctggcgcaccagctaacccttcctatgtccgtgtagttgaccgctcaaagtatgggacat 388 Query: 422 ttgtcaacaaggtacagggaactcagggcagtcggctacgtaaagatgaagttgtggtgc 481 || ||||||||||||||||||| ||||| ||||| || | ||||||||||| || ||| Sbjct: 389 ttttcaacaaggtacagggaacacagggtagtcgccttcataaagatgaagatgcaatgc 448 Query: 482 tttctgatggcgatactgtgactttcggaaatggcaacatgaccttcaggttctcgtttg 541 || ||||||| |||||||| ||||| |||| |||||| ||||||||||| || |||| Sbjct: 449 ttgctgatggggatactgtaacttttggaactggcaatgcaaccttcaggttgtcatttg 508 Query: 542 tccccatagtggtcttttttcatggcaaaaagtcagcacgaattgatcgatcattgcagg 601 |||||||||| |||||||||||||| |||||||||| | ||| || || ||||||| Sbjct: 509 tccccatagtagtcttttttcatggaaaaaagtcagggaggattagtccatgtttgcagg 568 Query: 602 cagtcatgacatctattggtgcatatgttactcgtaagtggattgatacatgtacacatg 661 |||| |||||||| ||||||||||||| |||||| ||||||| |||| ||| || |||| Sbjct: 569 cagtaatgacatccattggtgcatatgctactcggaagtggagtgatgaatgcactcatg 628 Query: 662 ttcttgtggatgaatcatcttcattgacacttgagctcctcgatgc 707 | ||||| || || |||| ||||||||||| ||||||||| ||||| Sbjct: 629 tccttgttgacgagtcatgttcattgacacctgagctcctagatgc 674 Score = 121 bits (61), Expect = 1e-23 Identities = 196/241 (81%) Strand = Plus / Plus Query: 1652 atctgattgtgaaaagggtccttcggccagctcctgccgcgtcatcagaaactggaggcg 1711 ||||| |||||||||| |||||| | |||||| ||||| || ||||||||| ||| Sbjct: 1523 atctggttgtgaaaagcatccttcagtcagctcgtgccgaatccatagaaactggtggca 1582 Query: 1712 ttaacttcaaacgattcaaaaagaggcaaaccgtgtctggaaacagcttcaaggccctta 1771 ||||||||||||| || | |||||| | | |||||||||||||||||||||| ||| | Sbjct: 1583 ttaacttcaaacgctttagaaagagaggagcagtgtctggaaacagcttcaaggacctaa 1642 Query: 1772 ttccatgtgcacgagaaccatacagagaatctgattacgagaagggcaccttgaacgatt 1831 | || | | |||||||||||||||||||||||||||||||| || || | | || | Sbjct: 1643 tcccgtattcacgagaaccatacagagaatctgattacgagcgtggaacggtaactgact 1702 Query: 1832 tcatgagagaggagaagcggcgaaagcaaatggaatccatcgcggaggacctcttcaaca 1891 ||||| ||||||||||| ||| | |||||||||| |||| || |||||||||||||||| Sbjct: 1703 tcatgcgagaggagaagaagcggaggcaaatggaagccattgcagaggacctcttcaaca 1762 Query: 1892 a 1892 | Sbjct: 1763 a 1763 Score = 60.0 bits (30), Expect = 4e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1403 aacccatggaggaggatgttcaggtcatagagaaaacagcaa 1444 |||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1370 aacctatggaggaggatgtcaaggtcatagagaaaacagcaa 1411
>dbj|AK069561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022F23, full insert sequence Length = 2140 Score = 494 bits (249), Expect = e-136 Identities = 489/569 (85%) Strand = Plus / Plus Query: 734 tgggaaactggttcaaggcgatggctgaaaagaacatacacacagagatcccttcttgta 793 ||||| ||||||| |||| |||||||||||||||||||||||| || || ||||||| || Sbjct: 702 tgggagactggtttaaggtgatggctgaaaagaacatacacaccgaaatgccttcttcta 761 Query: 794 cacaatatattccaaacttgactcttgatgggatggatataaagatggttgagaacaagc 853 |||| ||||||||||| ||||| |||||||||||||| ||| || |||| |||| ||||| Sbjct: 762 cacagtatattccaaagttgacccttgatgggatggagatacaggtggtggagatcaagc 821 Query: 854 tcatggagaattgcctagcaggccatacttttatcctgggatcatcagaaaagtataaat 913 |||| |||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| Sbjct: 822 tcatagagagctgccttgcaggctatacttttatcttggggtcatcagaaaagtataaat 881 Query: 914 ttggagagaaaatacaagagttactggaatcaactggagcaaaatatctcagcatcgagg 973 ||||||| ||| |||| | ||||||||||| ||||||||||||||||| | | || | Sbjct: 882 ttggagacaaactacatgctttactggaatctactggagcaaaatatctgcacgttgatg 941 Query: 974 agttttgtgctaacagccaggactctggagctggagacaatgaccaacaaattcttcttg 1033 |||||||||| ||||||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 942 agttttgtgcaaacagccaggactctggagctggtgaaaatgataaagatattcttcttg 1001 Query: 1034 ttcctgcaaaatctcctttggagttcagtaagatgcgtcctctatttcctttgtccaaga 1093 |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 1002 ttcctgcaaaatctcctttggaattcagtaagatacgcgggctatttcctttgtccaaga 1061 Query: 1094 tcactgacgtgaagctatttgctgctatattgtctggtcgcttggaagcagctgctattg 1153 | || || || ||||| ||||||||||| || ||||||| ||| |||||| |||| |||| Sbjct: 1062 taaccgatgtaaagctctttgctgctattttatctggtcacttagaagcaactgccattg 1121 Query: 1154 aaccacctgcttacatgattacatcctccaatacaacggatgaaactattgtggcggatt 1213 |||| || |||||||| || ||||||| ||| | |||||||| |||||||||| ||| | Sbjct: 1122 aaccgccagcttacattgttgcatcctcaaattcgacggatgagactattgtggtggact 1181 Query: 1214 ctgatgtcgaaactgatactgcaatgtctgatcgtactgttgctgctagcaagtctcagc 1273 ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||| | | Sbjct: 1182 ctgatgtagaaattgatactgcaacttctgatcatactgttgctgctagcaagtctgaac 1241 Query: 1274 accatattcagcatatgtctgatgataaa 1302 | || ||| ||||||| |||||||||||| Sbjct: 1242 atcacattgagcatatttctgatgataaa 1270 Score = 357 bits (180), Expect = 1e-94 Identities = 440/526 (83%), Gaps = 3/526 (0%) Strand = Plus / Plus Query: 185 tggtctgggcgctgacccccttcggcacagtgcgcggggcgcagcagtactacatctccg 244 |||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||| || Sbjct: 150 tggtgtgggcgctgacccccgtcgacacagtgcgcggggcgcagaggtgctacatcttcg 209 Query: 245 ccgccgggacgtacacggtcggccgcaaagattgcga---catcgttcaaacagaaacat 301 ||||||||||||||| ||||||||||||||||||||| ||| |||||||| || |||| Sbjct: 210 ccgccgggacgtacaaggtcggccgcaaagattgcgatgtcattgttcaaacggacacat 269 Query: 302 caatatcccgagtgcatgcggagatagcagttgaaaagatggttgcctgggagccacgtt 361 | ||||| ||||| ||||| ||||| | |||||||||||||| |||||||| |||| | Sbjct: 270 cgatatcgcgagtccatgcagagattgtggttgaaaagatggtggcctgggatccacaat 329 Query: 362 ctggtgctccagcaagcccttcatgtgttagtgtagttgatcgctcgaaatacggcacat 421 |||| || ||||| | |||||| | ||| |||||||||| ||||| || || || |||| Sbjct: 330 ctggcgcaccagctaacccttcctatgtccgtgtagttgaccgctcaaagtatgggacat 389 Query: 422 ttgtcaacaaggtacagggaactcagggcagtcggctacgtaaagatgaagttgtggtgc 481 || ||||||||||||||||||| ||||| ||||| || | ||||||||||| || ||| Sbjct: 390 ttttcaacaaggtacagggaacacagggtagtcgccttcataaagatgaagatgcaatgc 449 Query: 482 tttctgatggcgatactgtgactttcggaaatggcaacatgaccttcaggttctcgtttg 541 || ||||||| |||||||| ||||| |||| |||||| ||||||||||| || |||| Sbjct: 450 ttgctgatggggatactgtaacttttggaactggcaatgcaaccttcaggttgtcatttg 509 Query: 542 tccccatagtggtcttttttcatggcaaaaagtcagcacgaattgatcgatcattgcagg 601 |||||||||| |||||||||||||| |||||||||| | ||| || || ||||||| Sbjct: 510 tccccatagtagtcttttttcatggaaaaaagtcagggaggattagtccatgtttgcagg 569 Query: 602 cagtcatgacatctattggtgcatatgttactcgtaagtggattgatacatgtacacatg 661 |||| |||||||| ||||||||||||| |||||| ||||||| |||| ||| || |||| Sbjct: 570 cagtaatgacatccattggtgcatatgctactcggaagtggagtgatgaatgcactcatg 629 Query: 662 ttcttgtggatgaatcatcttcattgacacttgagctcctcgatgc 707 | ||||| || || |||| ||||||||||| ||||||||| ||||| Sbjct: 630 tccttgttgacgagtcatgttcattgacacctgagctcctagatgc 675 Score = 117 bits (59), Expect = 2e-22 Identities = 161/195 (82%) Strand = Plus / Plus Query: 1698 agaaactggaggcgttaacttcaaacgattcaaaaagaggcaaaccgtgtctggaaacag 1757 ||||||||| ||| ||||||||||||| || | |||||| | | |||||||||||||| Sbjct: 1570 agaaactggtggcattaacttcaaacgctttagaaagagaggagcagtgtctggaaacag 1629 Query: 1758 cttcaaggcccttattccatgtgcacgagaaccatacagagaatctgattacgagaaggg 1817 |||||||| ||| || || | | |||||||||||||||||||||||||||||||| || Sbjct: 1630 cttcaaggacctaatcccgtattcacgagaaccatacagagaatctgattacgagcgtgg 1689 Query: 1818 caccttgaacgatttcatgagagaggagaagcggcgaaagcaaatggaatccatcgcgga 1877 || | | || |||||| ||||||||||| ||| | |||||||||| |||| || || Sbjct: 1690 aacggtaactgacttcatgcgagaggagaagaagcggaggcaaatggaagccattgcaga 1749 Query: 1878 ggacctcttcaacaa 1892 ||||||||||||||| Sbjct: 1750 ggacctcttcaacaa 1764 Score = 60.0 bits (30), Expect = 4e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1403 aacccatggaggaggatgttcaggtcatagagaaaacagcaa 1444 |||| |||||||||||||| ||||||||||||||||||||| Sbjct: 1371 aacctatggaggaggatgtcaaggtcatagagaaaacagcaa 1412
>gb|AY107553.1| Zea mays PCO071975 mRNA sequence Length = 879 Score = 202 bits (102), Expect = 4e-48 Identities = 279/338 (82%) Strand = Plus / Plus Query: 934 ttactggaatcaactggagcaaaatatctcagcatcgaggagttttgtgctaacagccag 993 |||||||||||||||||||||||||| | ||| || || |||||||| ||||||||| Sbjct: 81 ttactggaatcaactggagcaaaatacgtgcacattgacgacttttgtgcaaacagccag 140 Query: 994 gactctggagctggagacaatgaccaacaaattcttcttgttcctgcaaaatctcctttg 1053 ||||| | ||||||||||| ||| || ||||||||| | ||||||||| || ||| ||| Sbjct: 141 gactcagcagctggagacactgatcatcaaattcttgtagttcctgcacgatatccattg 200 Query: 1054 gagttcagtaagatgcgtcctctatttcctttgtccaagatcactgacgtgaagctattt 1113 || ||||| ||||| ||| || ||| ||||||| ||||||| ||| | ||||||||| Sbjct: 201 gaattcagcaagatacgtgtgctgtttactttgtcaaagatcagtgatattaagctattt 260 Query: 1114 gctgctatattgtctggtcgcttggaagcagctgctattgaaccacctgcttacatgatt 1173 || |||||||||||||| ||| |||||||| || |||||||||||||||||| ||| || Sbjct: 261 gcagctatattgtctggccgcctggaagcaacttctattgaaccacctgcttccatcgtt 320 Query: 1174 acatcctccaatacaacggatgaaactattgtggcggattctgatgtcgaaactgatact 1233 |||||||| ||| | ||||||| ||||||||||||||||| ||||| |||| || || Sbjct: 321 acatcctcgaattccacggatgccactattgtggcggattcggatgttgaaatggagaca 380 Query: 1234 gcaatgtctgatcgtactgttgctgctagcaagtctca 1271 |||| ||| ||| ||||| |||||| | ||||||||| Sbjct: 381 gcaacttctaatcctactggtgctgccaacaagtctca 418 Score = 69.9 bits (35), Expect = 4e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 1705 ggaggcgttaacttcaaacgattcaaaaagaggcaaaccgtgtctggaaacagcttcaag 1764 ||||| ||||||||||| | |||| |||||| ||| ||||||||||||||||||||| Sbjct: 744 ggaggtgttaacttcaagtgcttcaggaagagggaaatggtgtctggaaacagcttcaag 803 Query: 1765 gcccttattccatgtgcacgagaaccatacagaga 1799 | ||| ||||| | ||| || |||||||||||||| Sbjct: 804 gacctcattccgtttgcgcgggaaccatacagaga 838 Score = 52.0 bits (26), Expect = 0.009 Identities = 32/34 (94%) Strand = Plus / Plus Query: 1411 gaggaggatgttcaggtcatagagaaaacagcaa 1444 ||||||||||| ||||||||||||||||||||| Sbjct: 543 gaggaggatgtgaaggtcatagagaaaacagcaa 576 Score = 42.1 bits (21), Expect = 8.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1582 aacaaggcgccaaaggatgagaacttggacagtagcaggga 1622 |||||||||||||||||||| || || |||| |||||||| Sbjct: 618 aacaaggcgccaaaggatgaaaaattagacaccagcaggga 658
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 157 bits (79), Expect = 2e-34 Identities = 145/167 (86%) Strand = Plus / Plus Query: 991 caggactctggagctggagacaatgaccaacaaattcttcttgttcctgcaaaatctcct 1050 ||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||| Sbjct: 17921518 caggactctggagctggtgaaaatgataaagatattcttcttgttcctgcaaaatctcct 17921577 Query: 1051 ttggagttcagtaagatgcgtcctctatttcctttgtccaagatcactgacgtgaagcta 1110 ||||| ||||||||||| || ||||||||||||||||||||||| || || ||||| Sbjct: 17921578 ttggaattcagtaagatacgcgggctatttcctttgtccaagatcaccgatgtaaagctc 17921637 Query: 1111 tttgctgctatattgtctggtcgcttggaagcagctgctattgaacc 1157 ||||||||||| || ||||||| ||| |||||| |||| |||||||| Sbjct: 17921638 tttgctgctattttatctggtcacttagaagcaactgccattgaacc 17921684 Score = 137 bits (69), Expect = 2e-28 Identities = 192/233 (82%) Strand = Plus / Plus Query: 286 gttcaaacagaaacatcaatatcccgagtgcatgcggagatagcagttgaaaagatggtt 345 |||||||| || ||||| ||||| ||||| ||||| ||||| | |||||||||||||| Sbjct: 17919942 gttcaaacggacacatcgatatcgcgagtccatgcagagattgtggttgaaaagatggtg 17920001 Query: 346 gcctgggagccacgttctggtgctccagcaagcccttcatgtgttagtgtagttgatcgc 405 |||||||| |||| ||||| || ||||| | |||||| | ||| |||||||||| ||| Sbjct: 17920002 gcctgggatccacaatctggcgcaccagctaacccttcctatgtccgtgtagttgaccgc 17920061 Query: 406 tcgaaatacggcacatttgtcaacaaggtacagggaactcagggcagtcggctacgtaaa 465 || || || || |||||| ||||||||||||||||||| ||||| ||||| || | |||| Sbjct: 17920062 tcaaagtatgggacatttttcaacaaggtacagggaacacagggtagtcgccttcataaa 17920121 Query: 466 gatgaagttgtggtgctttctgatggcgatactgtgactttcggaaatggcaa 518 ||||||| || ||||| ||||||| |||||||| ||||| |||| |||||| Sbjct: 17920122 gatgaagatgcaatgcttgctgatggggatactgtaacttttggaactggcaa 17920174 Score = 119 bits (60), Expect = 5e-23 Identities = 111/128 (86%) Strand = Plus / Plus Query: 1175 catcctccaatacaacggatgaaactattgtggcggattctgatgtcgaaactgatactg 1234 ||||||| ||| | |||||||| |||||||||| ||| |||||||| |||| |||||||| Sbjct: 17921846 catcctcaaattcgacggatgagactattgtggtggactctgatgtagaaattgatactg 17921905 Query: 1235 caatgtctgatcgtactgttgctgctagcaagtctcagcaccatattcagcatatgtctg 1294 ||| ||||||| |||||||||||||||||||||| | || || ||| ||||||| |||| Sbjct: 17921906 caacttctgatcatactgttgctgctagcaagtctgaacatcacattgagcatatttctg 17921965 Query: 1295 atgataaa 1302 |||||||| Sbjct: 17921966 atgataaa 17921973 Score = 103 bits (52), Expect = 3e-18 Identities = 94/108 (87%) Strand = Plus / Plus Query: 799 tatattccaaacttgactcttgatgggatggatataaagatggttgagaacaagctcatg 858 ||||||||||| ||||| |||||||||||||| ||| || |||| |||| ||||||||| Sbjct: 17921030 tatattccaaagttgacccttgatgggatggagatacaggtggtggagatcaagctcata 17921089 Query: 859 gagaattgcctagcaggccatacttttatcctgggatcatcagaaaag 906 |||| ||||| |||||| ||||||||||| |||| |||||||||||| Sbjct: 17921090 gagagctgccttgcaggctatacttttatcttggggtcatcagaaaag 17921137 Score = 75.8 bits (38), Expect = 6e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 905 agtataaatttggagagaaaatacaagagttactggaatcaactggagcaaaatatctca 964 |||||||||||||||| ||| |||| | ||||||||||| ||||||||||||||||| Sbjct: 17921215 agtataaatttggagacaaactacatgctttactggaatctactggagcaaaatatctgc 17921274 Query: 965 gcatcgaggagttttgtgctaacagccagg 994 | | || ||||||||||| |||||||||| Sbjct: 17921275 acgttgatgagttttgtgcaaacagccagg 17921304 Score = 69.9 bits (35), Expect = 4e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 220 ggggcgcagcagtactacatctccgccgccgggacgtacacggtcggccgcaaag 274 ||||||||| || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 17919490 ggggcgcagaggtgctacatcttcgccgccgggacgtacaaggtcggccgcaaag 17919544 Score = 67.9 bits (34), Expect = 1e-07 Identities = 46/50 (92%) Strand = Plus / Plus Query: 528 caggttctcgtttgtccccatagtggtcttttttcatggcaaaaagtcag 577 |||||| || |||||||||||||| |||||||||||||| |||||||||| Sbjct: 17920393 caggttgtcatttgtccccatagtagtcttttttcatggaaaaaagtcag 17920442 Score = 65.9 bits (33), Expect = 6e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 619 ggtgcatatgttactcgtaagtggattgatacatgtacacatgttcttgtggatgaatca 678 |||||||||| |||||| ||||||| |||| ||| || ||||| ||||| || || ||| Sbjct: 17920644 ggtgcatatgctactcggaagtggagtgatgaatgcactcatgtccttgttgacgagtca 17920703 Query: 679 tcttcattgacacttgagctcctcgatgc 707 | ||||||||||| ||||||||| ||||| Sbjct: 17920704 tgttcattgacacctgagctcctagatgc 17920732 Score = 60.0 bits (30), Expect = 4e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1403 aacccatggaggaggatgttcaggtcatagagaaaacagcaa 1444 |||| |||||||||||||| ||||||||||||||||||||| Sbjct: 17922074 aacctatggaggaggatgtcaaggtcatagagaaaacagcaa 17922115 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 1831 ttcatgagagaggagaagcggcgaaagcaaatggaatccatcgcggaggacctcttcaac 1890 |||||| ||||||||||| ||| | |||||||||| |||| || ||||||||||||||| Sbjct: 17922571 ttcatgcgagaggagaagaagcggaggcaaatggaagccattgcagaggacctcttcaac 17922630 Query: 1891 aa 1892 || Sbjct: 17922631 aa 17922632 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Plus Query: 753 gatggctgaaaagaacatacacacagagatcccttcttgtacaca 797 |||||||||||||||||||||||| || || ||||||| |||||| Sbjct: 17920902 gatggctgaaaagaacatacacaccgaaatgccttcttctacaca 17920946 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 1744 gtgtctggaaacagcttcaaggcccttattccatgtgcacgagaaccatacag 1796 |||||||||||||||||||||| ||| || || | | |||||||||||||||| Sbjct: 17922411 gtgtctggaaacagcttcaaggacctaatcccgtattcacgagaaccatacag 17922463 Score = 52.0 bits (26), Expect = 0.009 Identities = 38/42 (90%) Strand = Plus / Plus Query: 185 tggtctgggcgctgacccccttcggcacagtgcgcggggcgc 226 |||| ||||||||||||||| ||| |||||||||||| |||| Sbjct: 17919356 tggtgtgggcgctgacccccgtcgacacagtgcgcggtgcgc 17919397 Score = 42.1 bits (21), Expect = 8.5 Identities = 60/73 (82%) Strand = Plus / Plus Query: 1652 atctgattgtgaaaagggtccttcggccagctcctgccgcgtcatcagaaactggaggcg 1711 ||||| |||||||||| |||||| | |||||| ||||| || ||||||||| ||| Sbjct: 17922227 atctggttgtgaaaagcatccttcagtcagctcgtgccgaatccatagaaactggtggca 17922286 Query: 1712 ttaacttcaaacg 1724 ||||||||||||| Sbjct: 17922287 ttaacttcaaacg 17922299
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 157 bits (79), Expect = 2e-34 Identities = 145/167 (86%) Strand = Plus / Minus Query: 991 caggactctggagctggagacaatgaccaacaaattcttcttgttcctgcaaaatctcct 1050 ||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||| Sbjct: 10523 caggactctggagctggtgaaaatgataaagatattcttcttgttcctgcaaaatctcct 10464 Query: 1051 ttggagttcagtaagatgcgtcctctatttcctttgtccaagatcactgacgtgaagcta 1110 ||||| ||||||||||| || ||||||||||||||||||||||| || || ||||| Sbjct: 10463 ttggaattcagtaagatacgcgggctatttcctttgtccaagatcaccgatgtaaagctc 10404 Query: 1111 tttgctgctatattgtctggtcgcttggaagcagctgctattgaacc 1157 ||||||||||| || ||||||| ||| |||||| |||| |||||||| Sbjct: 10403 tttgctgctattttatctggtcacttagaagcaactgccattgaacc 10357 Score = 137 bits (69), Expect = 2e-28 Identities = 192/233 (82%) Strand = Plus / Minus Query: 286 gttcaaacagaaacatcaatatcccgagtgcatgcggagatagcagttgaaaagatggtt 345 |||||||| || ||||| ||||| ||||| ||||| ||||| | |||||||||||||| Sbjct: 12099 gttcaaacggacacatcgatatcgcgagtccatgcagagattgtggttgaaaagatggtg 12040 Query: 346 gcctgggagccacgttctggtgctccagcaagcccttcatgtgttagtgtagttgatcgc 405 |||||||| |||| ||||| || ||||| | |||||| | ||| |||||||||| ||| Sbjct: 12039 gcctgggatccacaatctggcgcaccagctaacccttcctatgtccgtgtagttgaccgc 11980 Query: 406 tcgaaatacggcacatttgtcaacaaggtacagggaactcagggcagtcggctacgtaaa 465 || || || || |||||| ||||||||||||||||||| ||||| ||||| || | |||| Sbjct: 11979 tcaaagtatgggacatttttcaacaaggtacagggaacacagggtagtcgccttcataaa 11920 Query: 466 gatgaagttgtggtgctttctgatggcgatactgtgactttcggaaatggcaa 518 ||||||| || ||||| ||||||| |||||||| ||||| |||| |||||| Sbjct: 11919 gatgaagatgcaatgcttgctgatggggatactgtaacttttggaactggcaa 11867 Score = 119 bits (60), Expect = 5e-23 Identities = 111/128 (86%) Strand = Plus / Minus Query: 1175 catcctccaatacaacggatgaaactattgtggcggattctgatgtcgaaactgatactg 1234 ||||||| ||| | |||||||| |||||||||| ||| |||||||| |||| |||||||| Sbjct: 10195 catcctcaaattcgacggatgagactattgtggtggactctgatgtagaaattgatactg 10136 Query: 1235 caatgtctgatcgtactgttgctgctagcaagtctcagcaccatattcagcatatgtctg 1294 ||| ||||||| |||||||||||||||||||||| | || || ||| ||||||| |||| Sbjct: 10135 caacttctgatcatactgttgctgctagcaagtctgaacatcacattgagcatatttctg 10076 Query: 1295 atgataaa 1302 |||||||| Sbjct: 10075 atgataaa 10068 Score = 103 bits (52), Expect = 3e-18 Identities = 94/108 (87%) Strand = Plus / Minus Query: 799 tatattccaaacttgactcttgatgggatggatataaagatggttgagaacaagctcatg 858 ||||||||||| ||||| |||||||||||||| ||| || |||| |||| ||||||||| Sbjct: 11011 tatattccaaagttgacccttgatgggatggagatacaggtggtggagatcaagctcata 10952 Query: 859 gagaattgcctagcaggccatacttttatcctgggatcatcagaaaag 906 |||| ||||| |||||| ||||||||||| |||| |||||||||||| Sbjct: 10951 gagagctgccttgcaggctatacttttatcttggggtcatcagaaaag 10904 Score = 75.8 bits (38), Expect = 6e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 905 agtataaatttggagagaaaatacaagagttactggaatcaactggagcaaaatatctca 964 |||||||||||||||| ||| |||| | ||||||||||| ||||||||||||||||| Sbjct: 10826 agtataaatttggagacaaactacatgctttactggaatctactggagcaaaatatctgc 10767 Query: 965 gcatcgaggagttttgtgctaacagccagg 994 | | || ||||||||||| |||||||||| Sbjct: 10766 acgttgatgagttttgtgcaaacagccagg 10737 Score = 69.9 bits (35), Expect = 4e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 220 ggggcgcagcagtactacatctccgccgccgggacgtacacggtcggccgcaaag 274 ||||||||| || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 12551 ggggcgcagaggtgctacatcttcgccgccgggacgtacaaggtcggccgcaaag 12497 Score = 67.9 bits (34), Expect = 1e-07 Identities = 46/50 (92%) Strand = Plus / Minus Query: 528 caggttctcgtttgtccccatagtggtcttttttcatggcaaaaagtcag 577 |||||| || |||||||||||||| |||||||||||||| |||||||||| Sbjct: 11648 caggttgtcatttgtccccatagtagtcttttttcatggaaaaaagtcag 11599 Score = 65.9 bits (33), Expect = 6e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 619 ggtgcatatgttactcgtaagtggattgatacatgtacacatgttcttgtggatgaatca 678 |||||||||| |||||| ||||||| |||| ||| || ||||| ||||| || || ||| Sbjct: 11397 ggtgcatatgctactcggaagtggagtgatgaatgcactcatgtccttgttgacgagtca 11338 Query: 679 tcttcattgacacttgagctcctcgatgc 707 | ||||||||||| ||||||||| ||||| Sbjct: 11337 tgttcattgacacctgagctcctagatgc 11309 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 1831 ttcatgagagaggagaagcggcgaaagcaaatggaatccatcgcggaggacctcttcaac 1890 |||||| ||||||||||| ||| | |||||||||| |||| || ||||||||||||||| Sbjct: 9470 ttcatgcgagaggagaagaagcggaggcaaatggaagccattgcagaggacctcttcaac 9411 Query: 1891 aa 1892 || Sbjct: 9410 aa 9409 Score = 60.0 bits (30), Expect = 4e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 1403 aacccatggaggaggatgttcaggtcatagagaaaacagcaa 1444 |||| |||||||||||||| ||||||||||||||||||||| Sbjct: 9967 aacctatggaggaggatgtcaaggtcatagagaaaacagcaa 9926 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Minus Query: 1744 gtgtctggaaacagcttcaaggcccttattccatgtgcacgagaaccatacag 1796 |||||||||||||||||||||| ||| || || | | |||||||||||||||| Sbjct: 9630 gtgtctggaaacagcttcaaggacctaatcccgtattcacgagaaccatacag 9578 Score = 58.0 bits (29), Expect = 1e-04 Identities = 41/45 (91%) Strand = Plus / Minus Query: 753 gatggctgaaaagaacatacacacagagatcccttcttgtacaca 797 |||||||||||||||||||||||| || || ||||||| |||||| Sbjct: 11139 gatggctgaaaagaacatacacaccgaaatgccttcttctacaca 11095 Score = 52.0 bits (26), Expect = 0.009 Identities = 38/42 (90%) Strand = Plus / Minus Query: 185 tggtctgggcgctgacccccttcggcacagtgcgcggggcgc 226 |||| ||||||||||||||| ||| |||||||||||| |||| Sbjct: 12685 tggtgtgggcgctgacccccgtcgacacagtgcgcggtgcgc 12644 Score = 42.1 bits (21), Expect = 8.5 Identities = 60/73 (82%) Strand = Plus / Minus Query: 1652 atctgattgtgaaaagggtccttcggccagctcctgccgcgtcatcagaaactggaggcg 1711 ||||| |||||||||| |||||| | |||||| ||||| || ||||||||| ||| Sbjct: 9814 atctggttgtgaaaagcatccttcagtcagctcgtgccgaatccatagaaactggtggca 9755 Query: 1712 ttaacttcaaacg 1724 ||||||||||||| Sbjct: 9754 ttaacttcaaacg 9742
>gb|DQ841175.1| Zea mays DNA damage signaling and repair protein (NBS1) gene, complete cds Length = 4180 Score = 155 bits (78), Expect = 8e-34 Identities = 183/218 (83%) Strand = Plus / Plus Query: 286 gttcaaacagaaacatcaatatcccgagtgcatgcggagatagcagttgaaaagatggtt 345 |||||||| || ||||| ||||||||||| ||||||||||| ||| |||||||||||||| Sbjct: 885 gttcaaactgacacatctatatcccgagtccatgcggagattgcaattgaaaagatggtt 944 Query: 346 gcctgggagccacgttctggtgctccagcaagcccttcatgtgttagtgtagttgatcgc 405 |||||||| |||| ||||||||| || || || || |||| |||| ||||| | || || Sbjct: 945 gcctgggatccacattctggtgcacctgccagtccatcatttgttcgtgtaatcgaccga 1004 Query: 406 tcgaaatacggcacatttgtcaacaaggtacagggaactcagggcagtcggctacgtaaa 465 || || || ||||||||||||||||| ||||| ||||| |||||||| || || | |||| Sbjct: 1005 tcaaagtatggcacatttgtcaacaaagtacatggaacccagggcagccgtctgcataaa 1064 Query: 466 gatgaagttgtggtgctttctgatggcgatactgtgac 503 ||||||| | || ||||| ||||||| ||| ||||||| Sbjct: 1065 gatgaagatatgatgcttactgatggggatgctgtgac 1102 Score = 115 bits (58), Expect = 7e-22 Identities = 145/174 (83%) Strand = Plus / Plus Query: 992 aggactctggagctggagacaatgaccaacaaattcttcttgttcctgcaaaatctcctt 1051 ||||||| | ||||||||||| ||| || ||||||||| | ||||||||| || ||| | Sbjct: 2740 aggactcagcagctggagacactgatcatcaaattcttgtagttcctgcacgatatccat 2799 Query: 1052 tggagttcagtaagatgcgtcctctatttcctttgtccaagatcactgacgtgaagctat 1111 |||| ||||| ||||| ||| || ||| ||||||| ||||||| ||| | ||||||| Sbjct: 2800 tggaattcagcaagatacgtgtgctgtttactttgtcaaagatcagtgatattaagctat 2859 Query: 1112 ttgctgctatattgtctggtcgcttggaagcagctgctattgaaccacctgctt 1165 |||| |||||||||||||| ||| |||||||| || |||||||||||||||||| Sbjct: 2860 ttgcagctatattgtctggccgcctggaagcaacttctattgaaccacctgctt 2913 Score = 89.7 bits (45), Expect = 4e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 749 aggcgatggctgaaaagaacatacacacagagatcccttcttgtacaca 797 |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 aggcaatggctgaaaagaacatacacacagagatcccttcttgtacaca 2021 Score = 83.8 bits (42), Expect = 2e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 528 caggttctcgtttgtccccatagtggtcttttttcatggcaaaaagtcagcacgaattga 587 |||||| || ||||| ||||||||||| |||||||||||| ||| || |||||||||| Sbjct: 1309 caggttgtcatttgttcccatagtggttttttttcatggcgcaaaatcgacacgaattga 1368 Query: 588 tcgatcattgcaggcagtcatgacatctattggt 621 || |||||| || |||||||||| |||||||||| Sbjct: 1369 tccatcattacatgcagtcatgaaatctattggt 1402 Score = 83.8 bits (42), Expect = 2e-12 Identities = 78/90 (86%) Strand = Plus / Plus Query: 619 ggtgcatatgttactcgtaagtggattgatacatgtacacatgttcttgtggatgaatca 678 |||||||||| |||||||||||||| || |||||||||||||||||| || | |||| Sbjct: 1560 ggtgcatatgctactcgtaagtggagcaatgaatgtacacatgttcttgttgacggatca 1619 Query: 679 tcttcattgacacttgagctcctcgatgca 708 | ||| ||||||| |||||||||||||||| Sbjct: 1620 tgttcgttgacacctgagctcctcgatgca 1649 Score = 81.8 bits (41), Expect = 1e-11 Identities = 86/101 (85%) Strand = Plus / Plus Query: 802 attccaaacttgactcttgatgggatggatataaagatggttgagaacaagctcatggag 861 ||||||||||||||||| |||||||||| || || ||||| || | ||| ||||| || Sbjct: 2143 attccaaacttgactctagatgggatggtgatcaaaatggtggatatcaacctcattcag 2202 Query: 862 aattgcctagcaggccatacttttatcctgggatcatcaga 902 |||| ||||| |||| |||||||||||||||| |||||||| Sbjct: 2203 aatttcctagaaggctatacttttatcctggggtcatcaga 2243 Score = 61.9 bits (31), Expect = 9e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 1827 cgatttcatgagagaggagaagcggcgaaagcaaatggaatccatcgcggaggacctctt 1886 |||||||||| | ||||||||||||| || |||||||| |||| |||||||| ||||| Sbjct: 3783 cgatttcatgcgggaggagaagcggcagaaacaaatggaggccattgcggaggatctctt 3842 Query: 1887 caacaac 1893 ||||||| Sbjct: 3843 caacaac 3849 Score = 60.0 bits (30), Expect = 4e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1403 aacccatggaggaggatgttcaggtcatagagaaaacagcaa 1444 |||| |||||||||||||| ||||||||||||||||||||| Sbjct: 3279 aaccgatggaggaggatgtgaaggtcatagagaaaacagcaa 3320 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Plus Query: 1744 gtgtctggaaacagcttcaaggcccttattccatgtgcacgagaaccatacag 1796 |||||||||||||||||||||| ||| ||||| | ||| || ||||||||||| Sbjct: 3610 gtgtctggaaacagcttcaaggacctcattccgtttgcgcgggaaccatacag 3662 Score = 56.0 bits (28), Expect = 6e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 235 tacatctccgccgccgggacgtacacggtcggccgcaaag 274 ||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 233 tacatcttcgctgccgggacgtacaaggtcggccgcaaag 272 Score = 56.0 bits (28), Expect = 6e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 1172 ttacatcctccaatacaacggatgaaactattgtggcggattctgatgtcgaaactgata 1231 |||||||||| ||| | ||||||| ||||||||||||||||| ||||| |||| || | Sbjct: 3063 ttacatcctcgaattccacggatgccactattgtggcggattcggatgttgaaatggaga 3122 Query: 1232 ctgcaatgtctgatcgtactgttgctgctagcaagtctca 1271 | |||| ||| ||| ||||| |||||| | ||||||||| Sbjct: 3123 cagcaacttctaatcctactggtgctgccaacaagtctca 3162 Score = 52.0 bits (26), Expect = 0.009 Identities = 26/26 (100%) Strand = Plus / Plus Query: 934 ttactggaatcaactggagcaaaata 959 |||||||||||||||||||||||||| Sbjct: 2354 ttactggaatcaactggagcaaaata 2379 Score = 46.1 bits (23), Expect = 0.54 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1679 cagctcctgccgcgtcatcagaaactggaggcgttaacttcaa 1721 ||||||||||||| || |||||| ||||||||||||||||| Sbjct: 3462 cagctcctgccgcaccagcagaaatcggaggcgttaacttcaa 3504
>ref|XM_417150.2| PREDICTED: Gallus gallus poly (ADP-ribose) polymerase family, member 4 (PARP4), mRNA Length = 5251 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 651 atgtacacatgttcttgtggat 672 |||||||||||||||||||||| Sbjct: 227 atgtacacatgttcttgtggat 248
>ref|XM_001227218.1| Chaetomium globosum CBS 148.51 predicted protein (CHGG_09292) mRNA, complete cds Length = 489 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1903 cagaagaagaaggcggtcgcgg 1924 |||||||||||||||||||||| Sbjct: 448 cagaagaagaaggcggtcgcgg 469
>ref|XM_001220804.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01584) mRNA, complete cds Length = 969 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1833 catgagagaggagaagcggcga 1854 |||||||||||||||||||||| Sbjct: 411 catgagagaggagaagcggcga 432
>gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome 7, complete sequence Length = 220916 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1213 tctgatgtcgaaactgatactg 1234 |||||||||||||||||||||| Sbjct: 175628 tctgatgtcgaaactgatactg 175649
>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence Length = 67392 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 909 taaatttggagagaaaatacaa 930 |||||||||||||||||||||| Sbjct: 2341 taaatttggagagaaaatacaa 2320
>emb|AL606463.6| Human DNA sequence from clone RP11-485D21 on chromosome 1 Contains the 5' end of a novel gene, complete sequence Length = 159304 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 676 tcatcttcattgacacttgagc 697 |||||||||||||||||||||| Sbjct: 50587 tcatcttcattgacacttgagc 50608
>emb|AL833835.1|HSM805113 Homo sapiens mRNA; cDNA DKFZp434F056 (from clone DKFZp434F056) Length = 3462 Score = 44.1 bits (22), Expect = 2.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2094 ggggtgtgtgtgggatatgggttgtg 2119 |||||||||||||||| ||||||||| Sbjct: 2240 ggggtgtgtgtgggatgtgggttgtg 2265
>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence Length = 184139 Score = 44.1 bits (22), Expect = 2.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2094 ggggtgtgtgtgggatatgggttgtg 2119 |||||||||||||||| ||||||||| Sbjct: 104943 ggggtgtgtgtgggatgtgggttgtg 104918
>emb|BX932696.1| Gallus gallus finished cDNA, clone ChEST495l10 Length = 524 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 651 atgtacacatgttcttgtggat 672 |||||||||||||||||||||| Sbjct: 233 atgtacacatgttcttgtggat 254
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1213 tctgatgtcgaaactgatactg 1234 |||||||||||||||||||||| Sbjct: 82067 tctgatgtcgaaactgatactg 82088
>ref|NM_025090.2| Homo sapiens ubiquitin specific peptidase 36 (USP36), mRNA dbj|AB040886.1| Homo sapiens mRNA for KIAA1453 protein, partial cds Length = 5879 Score = 44.1 bits (22), Expect = 2.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2094 ggggtgtgtgtgggatatgggttgtg 2119 |||||||||||||||| ||||||||| Sbjct: 3933 ggggtgtgtgtgggatgtgggttgtg 3958
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 cgccgggacgtacacggtcggccgc 270 ||||| ||||||||||||||||||| Sbjct: 1186944 cgccgcgacgtacacggtcggccgc 1186968
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1310 gtaaagttacaagcagtgtga 1330 ||||||||||||||||||||| Sbjct: 9056056 gtaaagttacaagcagtgtga 9056076
>gb|DQ386648.1| Astatotilapia burtoni clone BAC 26M7 platelet-derived growth factor receptor beta a (pdgfrba) and colony-stimulating factor 1 receptor a (csf1ra) genes, complete cds Length = 97628 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1081 cctttgtccaagatcactgac 1101 ||||||||||||||||||||| Sbjct: 51430 cctttgtccaagatcactgac 51450
>gb|AC167019.4| Mus musculus BAC clone RP23-262K24 from chromosome 15, complete sequence Length = 207785 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2090 aggaggggtgtgtgtgggatatggg 2114 |||||||||||||||||||| |||| Sbjct: 40092 aggaggggtgtgtgtgggatgtggg 40068
>gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's Hospital Oakland Research Institute) complete sequence Length = 163448 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1625 agacttgtcatgttattttca 1645 ||||||||||||||||||||| Sbjct: 117243 agacttgtcatgttattttca 117263
>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence Length = 187090 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1495 gcaatttctgggttcaaagct 1515 ||||||||||||||||||||| Sbjct: 125638 gcaatttctgggttcaaagct 125618
>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence Length = 181742 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2090 aggaggggtgtgtgtgggatatggg 2114 |||||||||||||||||||| |||| Sbjct: 134894 aggaggggtgtgtgtgggatgtggg 134870
>gb|AC027708.12| Homo sapiens chromosome 15, clone RP11-82I10, complete sequence Length = 176613 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 761 aaaagaacatacacacagaga 781 ||||||||||||||||||||| Sbjct: 94836 aaaagaacatacacacagaga 94856
>gb|AC091218.2| Drosophila melanogaster 3L BAC RP98-3E24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179972 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1310 gtaaagttacaagcagtgtga 1330 ||||||||||||||||||||| Sbjct: 75878 gtaaagttacaagcagtgtga 75898
>gb|AC114283.2| Homo sapiens chromosome 5 clone CTD-2319M2, complete sequence Length = 154535 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 894 atcatcagaaaagtataaatt 914 ||||||||||||||||||||| Sbjct: 1329 atcatcagaaaagtataaatt 1309
>gb|AC116311.1| Homo sapiens chromosome 5 clone CTD-2212M21, complete sequence Length = 123905 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 894 atcatcagaaaagtataaatt 914 ||||||||||||||||||||| Sbjct: 33380 atcatcagaaaagtataaatt 33360
>gb|AC097507.2| Homo sapiens BAC clone RP11-371E22 from 4, complete sequence Length = 167032 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1335 tgtaaatttaggagaaacaaa 1355 ||||||||||||||||||||| Sbjct: 79041 tgtaaatttaggagaaacaaa 79061
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 835 aagatggttgagaacaagctcatgg 859 ||||||||||||| ||||||||||| Sbjct: 25236894 aagatggttgagaccaagctcatgg 25236870
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 657 acatgttcttgtggatgaatcatcttcat 685 ||||||||| |||||||||||||||||| Sbjct: 15587525 acatgttctattggatgaatcatcttcat 15587553
>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2 Contains the 3' end of the RPS6KA6 gene for ribosomal protein S6 kinase, complete sequence Length = 173760 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1624 gagacttgtcatgttattttc 1644 ||||||||||||||||||||| Sbjct: 103756 gagacttgtcatgttattttc 103776
>gb|AC139671.10| Mus musculus chromosome 15, clone RP23-230O9, complete sequence Length = 224181 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2092 gaggggtgtgtgtgggatatg 2112 ||||||||||||||||||||| Sbjct: 86336 gaggggtgtgtgtgggatatg 86316
>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence Length = 186413 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 761 aaaagaacatacacacagaga 781 ||||||||||||||||||||| Sbjct: 93565 aaaagaacatacacacagaga 93545
>emb|BX248395.9| Zebrafish DNA sequence from clone CH211-213A13 in linkage group 22, complete sequence Length = 206668 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1287 tatgtctgatgataaaggagaaagt 1311 |||||||||| |||||||||||||| Sbjct: 141091 tatgtctgataataaaggagaaagt 141067
>gb|AC026706.5|AC026706 Homo sapiens chromosome 5 clone CTD-2068N7, complete sequence Length = 131370 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1385 agaaagaagaaatttcggaac 1405 ||||||||||||||||||||| Sbjct: 29391 agaaagaagaaatttcggaac 29371
>gb|AC015468.5|AC015468 Homo sapiens chromosome 8, clone RP11-369E15, complete sequence Length = 189662 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 991 caggactctggagctggagac 1011 ||||||||||||||||||||| Sbjct: 178347 caggactctggagctggagac 178327
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 657 acatgttcttgtggatgaatcatcttcat 685 ||||||||| |||||||||||||||||| Sbjct: 145034 acatgttctattggatgaatcatcttcat 145062
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 657 acatgttcttgtggatgaatcatcttcat 685 ||||||||| |||||||||||||||||| Sbjct: 25422 acatgttctattggatgaatcatcttcat 25450
>dbj|AP006452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1250G12 Length = 144590 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 835 aagatggttgagaacaagctcatgg 859 ||||||||||||| ||||||||||| Sbjct: 4045 aagatggttgagaccaagctcatgg 4021
>gb|AC103719.12| Homo sapiens chromosome 8, clone RP11-421P23, complete sequence Length = 167878 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 991 caggactctggagctggagac 1011 ||||||||||||||||||||| Sbjct: 50630 caggactctggagctggagac 50610
>emb|BX842663.3| Mouse DNA sequence from clone RP23-176P20 on chromosome 2, complete sequence Length = 195115 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 767 acatacacacagagatccctt 787 ||||||||||||||||||||| Sbjct: 57240 acatacacacagagatccctt 57260
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1582 aacaaggcgccaaaggatgag 1602 ||||||||||||||||||||| Sbjct: 109268 aacaaggcgccaaaggatgag 109288
>gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229744 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1564 tgtgatgctgtttttgtgaac 1584 ||||||||||||||||||||| Sbjct: 171426 tgtgatgctgtttttgtgaac 171406 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 404,229,269 Number of extensions: 22283175 Number of successful extensions: 119268 Number of sequences better than 10.0: 44 Number of HSP's gapped: 119253 Number of HSP's successfully gapped: 96 Length of query: 2213 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2190 Effective length of database: 18,503,978,556 Effective search space: 40523713037640 Effective search space used: 40523713037640 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
