ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf71b15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056185.1| Oryza sativa (japonica cultivar-group) Os03g0265600 (Os03g0265600) mRNA, complete cds Length = 1437 Score = 333 bits (168), Expect = 1e-87 Identities = 374/440 (85%), Gaps = 2/440 (0%) Strand = Plus / Plus Query: 116 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 175 ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 164 aggtataggagtcgttctagaagtgtggactcaagtgatgttgaaaaccctgggaacaac 223 Query: 176 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 235 || | ||| ||||| ||||| ||||| | || ||||||||||||||||| || || ||| Sbjct: 224 ctgtatgttactggcttatctgctcgtgtgacagatcgagatctggagaaacacttttct 283 Query: 236 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 295 | ||||||||||| |||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 284 gctgagggagaggttattgatgctagcatagtacttgatccatggacaagggaatcccgg 343 Query: 296 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 355 ||||||||||||||||||||||| | | |||||||||| || | |||||||||||||| Sbjct: 344 ggatttggatttgttaccatggctactgttaaggaggctgatctttgcatcaaatatcta 403 Query: 356 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 415 ||| | |||||| ||||||||||||| || ||||| |||||| ||||||||||||||||| Sbjct: 404 gaccgctcagtgttggaaggtcgtgtgataactgtagagaagcttttgttgacagcagca 463 Query: 416 -ggttgatgcccgcagctgtatggcatcaaattcaaaagatacacaacctaagatcgaaa 474 ||| |||| ||| |||| | ||||||||||||||| ||||||||| | | ||| Sbjct: 464 gggtagatgtccgttgctgctctacgtcaaattcaaaagatttacaacctaacagccaaa 523 Query: 475 caatgctacctcaaccaaagggcaaagagaagacgaggtcgaaccccaacaccgggaagg 534 | ||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||||| Sbjct: 524 c-atgctacctcaaccaaagggccaagagaagacgtggtcgaacaccaacgcccggaagg 582 Query: 535 taccttggcagcaaatcatc 554 || || |||| |||||||| Sbjct: 583 tatctaggcacaaaatcatc 602 Score = 109 bits (55), Expect = 3e-20 Identities = 133/159 (83%) Strand = Plus / Plus Query: 869 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 928 ||||||||||||| |||||| |||||||||| ||||||||| ||| |||||| || || Sbjct: 917 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 976 Query: 929 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 988 ||||| ||||||| || ||| ||||||||||||| ||| ||||||| || ||||||| Sbjct: 977 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 1036 Query: 989 gcgtatcaccacgcaggagctactcccgtagctgctccc 1027 | |||||||| | ||||||||||||| |||||| |||| Sbjct: 1037 gtgtatcacctcagaggagctactcccatagctgttccc 1075 Score = 77.8 bits (39), Expect = 1e-10 Identities = 138/171 (80%) Strand = Plus / Plus Query: 595 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 654 |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | Sbjct: 652 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 711 Query: 655 agaggacgatcatactctcgtcatgacaggcatagatcatactccccctatggaaggagg 714 ||| | |||||||| |||| | |||||| ||||||||||||||||||| ||| | Sbjct: 712 agaaggcgatcatattctccatacaacaggcgaagatcatactccccctatgagaggcgt 771 Query: 715 ccatcctactccccctatgaaaggaggccatcctactctccctatggcaga 765 ||||||||| || |||||||||| | ||||||||||| ||||||||| Sbjct: 772 agatcctactctccacatgaaaggagacagtcctactctccgtatggcaga 822 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 1114 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 1173 ||||||| |||||| || ||||| | |||||||||||||| | ||| ||||| |||||| Sbjct: 1156 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 1215 Query: 1174 agggagcgctca 1185 |||||||||||| Sbjct: 1216 agggagcgctca 1227
>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full insert sequence Length = 1438 Score = 325 bits (164), Expect = 2e-85 Identities = 373/440 (84%), Gaps = 2/440 (0%) Strand = Plus / Plus Query: 116 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 175 ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 165 aggtataggagtcgttctagaagtgtggactcaagtgatgttgaaaaccctgggaacaac 224 Query: 176 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 235 || | ||| ||||| ||||| ||||| | || ||||||||||||||||| || || ||| Sbjct: 225 ctgtatgttactggcttatctgctcgtgtgacagatcgagatctggagaaacacttttct 284 Query: 236 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 295 | ||||||||||| |||||||| || || ||||||||||||||||||||||||| ||| Sbjct: 285 gctgagggagaggttattgatgctagcatagtacttgatccatggacaagggaattccgg 344 Query: 296 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 355 ||||||||||||||||||||||| | | |||||||||| || | |||||||||||||| Sbjct: 345 ggatttggatttgttaccatggctactgttaaggaggctgatctttgcatcaaatatcta 404 Query: 356 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 415 ||| | |||||| ||||||||||||| || ||||| |||||| ||||||||||||||||| Sbjct: 405 gaccgctcagtgttggaaggtcgtgtgataactgtagagaagcttttgttgacagcagca 464 Query: 416 -ggttgatgcccgcagctgtatggcatcaaattcaaaagatacacaacctaagatcgaaa 474 ||| |||| ||| |||| | ||||||||||||||| ||||||||| | | ||| Sbjct: 465 gggtagatgtccgttgctgctctacgtcaaattcaaaagatttacaacctaacagccaaa 524 Query: 475 caatgctacctcaaccaaagggcaaagagaagacgaggtcgaaccccaacaccgggaagg 534 | ||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||||| Sbjct: 525 c-atgctacctcaaccaaagggccaagagaagacgtggtcgaacaccaacgcccggaagg 583 Query: 535 taccttggcagcaaatcatc 554 || || |||| |||||||| Sbjct: 584 tatctaggcacaaaatcatc 603 Score = 109 bits (55), Expect = 3e-20 Identities = 133/159 (83%) Strand = Plus / Plus Query: 869 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 928 ||||||||||||| |||||| |||||||||| ||||||||| ||| |||||| || || Sbjct: 918 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 977 Query: 929 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 988 ||||| ||||||| || ||| ||||||||||||| ||| ||||||| || ||||||| Sbjct: 978 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 1037 Query: 989 gcgtatcaccacgcaggagctactcccgtagctgctccc 1027 | |||||||| | ||||||||||||| |||||| |||| Sbjct: 1038 gtgtatcacctcagaggagctactcccatagctgttccc 1076 Score = 77.8 bits (39), Expect = 1e-10 Identities = 138/171 (80%) Strand = Plus / Plus Query: 595 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 654 |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | Sbjct: 653 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 712 Query: 655 agaggacgatcatactctcgtcatgacaggcatagatcatactccccctatggaaggagg 714 ||| | |||||||| |||| | |||||| ||||||||||||||||||| ||| | Sbjct: 713 agaaggcgatcatattctccatacaacaggcgaagatcatactccccctatgagaggcgt 772 Query: 715 ccatcctactccccctatgaaaggaggccatcctactctccctatggcaga 765 ||||||||| || |||||||||| | ||||||||||| ||||||||| Sbjct: 773 agatcctactctccacatgaaaggagacagtcctactctccgtatggcaga 823 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 1114 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 1173 ||||||| |||||| || ||||| | |||||||||||||| | ||| ||||| |||||| Sbjct: 1157 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 1216 Query: 1174 agggagcgctca 1185 |||||||||||| Sbjct: 1217 agggagcgctca 1228
>emb|CT832922.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN029F21, full insert sequence Length = 1571 Score = 289 bits (146), Expect = 1e-74 Identities = 325/382 (85%), Gaps = 2/382 (0%) Strand = Plus / Plus Query: 116 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 175 ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 181 aggtataggagtcgttctagaagtgtggactcaagtgatgttgaaaaccctgggaacaac 240 Query: 176 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 235 || | ||| ||||| ||||| ||||| | || ||||||||||||||||| || || ||| Sbjct: 241 ctgtatgttactggcttatctgctcgtgtgacagatcgagatctggagaaacacttttct 300 Query: 236 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 295 | ||||||||||| |||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 301 gctgagggagaggttattgatgctagcatagtacttgatccatggacaagggaatcccgg 360 Query: 296 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 355 ||||||||||||||||||||||| | | |||||||||| || | |||||||||||||| Sbjct: 361 ggatttggatttgttaccatggctactgttaaggaggctgatctttgcatcaaatatcta 420 Query: 356 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 415 ||| | |||||| ||||||||||||| || ||||| |||||| ||||||||||||||||| Sbjct: 421 gaccgctcagtgttggaaggtcgtgtgataactgtagagaagcttttgttgacagcagca 480 Query: 416 -ggttgatgcccgcagctgtatggcatcaaattcaaaagatacacaacctaagatcgaaa 474 ||| |||| ||| |||| | ||||||||||||||| ||||||||| | | ||| Sbjct: 481 gggtagatgtccgttgctgctctacgtcaaattcaaaagatttacaacctaacagccaaa 540 Query: 475 caatgctacctcaaccaaaggg 496 | |||||||||||||||||||| Sbjct: 541 c-atgctacctcaaccaaaggg 561 Score = 101 bits (51), Expect = 7e-18 Identities = 132/159 (83%) Strand = Plus / Plus Query: 869 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 928 ||||||||||||| |||||| |||||||||| ||||||||| ||| |||||| | || Sbjct: 1051 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccatcctg 1110 Query: 929 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 988 ||||| ||||||| || ||| ||||||||||||| ||| ||||||| || ||||||| Sbjct: 1111 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 1170 Query: 989 gcgtatcaccacgcaggagctactcccgtagctgctccc 1027 | |||||||| | ||||||||||||| |||||| |||| Sbjct: 1171 gtgtatcacctcagaggagctactcccatagctgttccc 1209 Score = 69.9 bits (35), Expect = 2e-08 Identities = 137/171 (80%) Strand = Plus / Plus Query: 595 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 654 |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | Sbjct: 786 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 845 Query: 655 agaggacgatcatactctcgtcatgacaggcatagatcatactccccctatggaaggagg 714 ||| | |||||||| |||| | |||||| ||||| ||||||||||||| ||| | Sbjct: 846 agaaggcgatcatattctccatacaacaggcgaagatcgtactccccctatgagaggcgt 905 Query: 715 ccatcctactccccctatgaaaggaggccatcctactctccctatggcaga 765 ||||||||| || |||||||||| | ||||||||||| ||||||||| Sbjct: 906 agatcctactctccacatgaaaggagacggtcctactctccgtatggcaga 956 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 1114 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 1173 ||||||| |||||| || ||||| | |||||||||||||| | ||| ||||| |||||| Sbjct: 1290 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 1349 Query: 1174 agggagcgctca 1185 |||||||||||| Sbjct: 1350 agggagcgctca 1361 Score = 48.1 bits (24), Expect = 0.088 Identities = 48/56 (85%) Strand = Plus / Plus Query: 499 aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 554 ||||||||||| |||||||| ||||| || |||||||| || |||| |||||||| Sbjct: 681 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 736
>gb|AY105790.1| Zea mays PCO079761 mRNA sequence Length = 1402 Score = 258 bits (130), Expect = 5e-65 Identities = 259/302 (85%) Strand = Plus / Plus Query: 116 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 175 |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| Sbjct: 165 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 224 Query: 176 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 235 || | |||||||||||| || ||||| |||| |||||||||||||||||||| ||||| Sbjct: 225 ctgtatgtgactggtttgtcggctcgtgtaacggatcgagatctggagaagcacttctcc 284 Query: 236 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 295 || ||||| ||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct: 285 actgagggtgaggtgattgatgcaagcgttgtgtatgatccttggacaagggaatcacgg 344 Query: 296 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 355 || ||||| |||||||||||||| | |||| || ||||| ||||||||||||||||| Sbjct: 345 gggtttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 404 Query: 356 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 415 ||| |||| ||| || ||||||| ||||| ||||||||||||||||||||||||||| || Sbjct: 405 gaccgttctgtgttgcaaggtcgggtcataactgttgagaagattttgttgacagcaaca 464 Query: 416 gg 417 || Sbjct: 465 gg 466 Score = 69.9 bits (35), Expect = 2e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 495 ggcaaagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 554 ||||||||||||||||||| ||||||||||||| || | ||| ||||||| |||||||| Sbjct: 663 ggcaaagagaagacgaggtagaaccccaacacctgggaagtatcttggcacaaaatcatc 722 Query: 555 gcgtcgaaggaggta 569 ||| || ||||||| Sbjct: 723 ccgtggacggaggta 737 Score = 50.1 bits (25), Expect = 0.022 Identities = 34/37 (91%) Strand = Plus / Plus Query: 748 tactctccctatggcagaaggagatcatactctcctt 784 |||||||| |||| ||||||| ||||||||||||||| Sbjct: 826 tactctccatatgacagaaggcgatcatactctcctt 862 Score = 44.1 bits (22), Expect = 1.4 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1144 agccgcagttcatgctcgaggtccgtctccagggagcgctca 1185 ||||||||||| | ||| ||||| || ||||||||||||||| Sbjct: 1219 agccgcagttcgtactccaggtctgtgtccagggagcgctca 1260
>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence Length = 1493 Score = 234 bits (118), Expect = 7e-58 Identities = 241/282 (85%) Strand = Plus / Plus Query: 116 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 175 |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| Sbjct: 167 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 226 Query: 176 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 235 || | |||||||||||| ||| ||||| |||| |||||||||||||||||||| ||||| Sbjct: 227 ctgtatgtgactggtttgtcagctcgtgtaacggatcgagatctggagaagcacttctcc 286 Query: 236 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 295 || |||| ||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct: 287 actaagggtgaggtgattgatgcaagcgttgtatatgatccttggacaagggaatcacgg 346 Query: 296 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 355 || ||||| |||||||||||||| | |||| || ||||| ||||||||||||||||| Sbjct: 347 ggttttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 406 Query: 356 gacagttcagtgctggaaggtcgtgtcattactgttgagaag 397 ||| |||| ||| || ||||||| ||||| |||||||||||| Sbjct: 407 gaccgttctgtgttgcaaggtcgggtcataactgttgagaag 448 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Plus Query: 495 ggcaaagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 554 ||||||||||||||| | | ||||||||||||| || | ||| ||||||| |||||||| Sbjct: 780 ggcaaagagaagacgcgttagaaccccaacacctgggaagtatcttggcacaaaatcatc 839 Query: 555 gcgtcgaaggaggta 569 ||| || ||||||| Sbjct: 840 ccgtggacggaggta 854 Score = 46.1 bits (23), Expect = 0.35 Identities = 32/35 (91%) Strand = Plus / Plus Query: 748 tactctccctatggcagaaggagatcatactctcc 782 |||||||| |||| ||||||| ||||||||||||| Sbjct: 907 tactctccatatgacagaaggcgatcatactctcc 941
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 151 bits (76), Expect = 8e-33 Identities = 133/152 (87%) Strand = Plus / Minus Query: 246 aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 305 |||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 8739241 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8739182 Query: 306 ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 365 ||||||||||||| | | |||||||||| || | |||||||||||||| ||| | |||| Sbjct: 8739181 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8739122 Query: 366 tgctggaaggtcgtgtcattactgttgagaag 397 || ||||||||||||| || ||||| |||||| Sbjct: 8739121 tgttggaaggtcgtgtgataactgtagagaag 8739090 Score = 109 bits (55), Expect = 3e-20 Identities = 133/159 (83%) Strand = Plus / Minus Query: 869 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 928 ||||||||||||| |||||| |||||||||| ||||||||| ||| |||||| || || Sbjct: 8738271 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 8738212 Query: 929 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 988 ||||| ||||||| || ||| ||||||||||||| ||| ||||||| || ||||||| Sbjct: 8738211 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 8738152 Query: 989 gcgtatcaccacgcaggagctactcccgtagctgctccc 1027 | |||||||| | ||||||||||||| |||||| |||| Sbjct: 8738151 gtgtatcacctcagaggagctactcccatagctgttccc 8738113 Score = 89.7 bits (45), Expect = 3e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 137 agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 196 ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct: 8739421 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8739362 Query: 197 tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 249 ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 8739361 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8739309 Score = 77.8 bits (39), Expect = 1e-10 Identities = 138/171 (80%) Strand = Plus / Minus Query: 595 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 654 |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | Sbjct: 8738536 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 8738477 Query: 655 agaggacgatcatactctcgtcatgacaggcatagatcatactccccctatggaaggagg 714 ||| | |||||||| |||| | |||||| ||||||||||||||||||| ||| | Sbjct: 8738476 agaaggcgatcatattctccatacaacaggcgaagatcatactccccctatgagaggcgt 8738417 Query: 715 ccatcctactccccctatgaaaggaggccatcctactctccctatggcaga 765 ||||||||| || |||||||||| | ||||||||||| ||||||||| Sbjct: 8738416 agatcctactctccacatgaaaggagacagtcctactctccgtatggcaga 8738366 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Minus Query: 1114 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 1173 ||||||| |||||| || ||||| | |||||||||||||| | ||| ||||| |||||| Sbjct: 8738032 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 8737973 Query: 1174 agggagcgctca 1185 |||||||||||| Sbjct: 8737972 agggagcgctca 8737961 Score = 56.0 bits (28), Expect = 4e-04 Identities = 50/56 (89%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 441 tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaaggg 496 ||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||| Sbjct: 8738938 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaaggg 8738884 Score = 48.1 bits (24), Expect = 0.088 Identities = 48/56 (85%) Strand = Plus / Minus Query: 499 aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 554 ||||||||||| |||||||| ||||| || |||||||| || |||| |||||||| Sbjct: 8738764 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 8738709
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 151 bits (76), Expect = 8e-33 Identities = 133/152 (87%) Strand = Plus / Minus Query: 246 aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 305 |||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 85057 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 84998 Query: 306 ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 365 ||||||||||||| | | |||||||||| || | |||||||||||||| ||| | |||| Sbjct: 84997 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 84938 Query: 366 tgctggaaggtcgtgtcattactgttgagaag 397 || ||||||||||||| || ||||| |||||| Sbjct: 84937 tgttggaaggtcgtgtgataactgtagagaag 84906 Score = 109 bits (55), Expect = 3e-20 Identities = 133/159 (83%) Strand = Plus / Minus Query: 869 accgttcaagatccccatacagttacagaaggcggaggtcatgctcccatgaccgttatg 928 ||||||||||||| |||||| |||||||||| ||||||||| ||| |||||| || || Sbjct: 84087 accgttcaagatctccataccgttacagaagagagaggtcatgttcctatgaccattctg 84028 Query: 929 tttcagcatactacagcaggcgctattctccaaggaacagaagacggagttactctcgca 988 ||||| ||||||| || ||| ||||||||||||| ||| ||||||| || ||||||| Sbjct: 84027 tttcaccatactatagaaggtgctattctccaagtgctagaggacggagctattctcgca 83968 Query: 989 gcgtatcaccacgcaggagctactcccgtagctgctccc 1027 | |||||||| | ||||||||||||| |||||| |||| Sbjct: 83967 gtgtatcacctcagaggagctactcccatagctgttccc 83929 Score = 89.7 bits (45), Expect = 3e-14 Identities = 96/113 (84%) Strand = Plus / Minus Query: 137 agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 196 ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct: 85237 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 85178 Query: 197 tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 249 ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 85177 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 85125 Score = 77.8 bits (39), Expect = 1e-10 Identities = 138/171 (80%) Strand = Plus / Minus Query: 595 agagaccgttacggctcacgctacccgcccgagctagaacgttcttattctccttatcgc 654 |||||||| ||| | ||||||||| | || |||| |||||| ||||||||||||||| | Sbjct: 84352 agagaccgctacagttcacgctactcacctgagcgagaacggtcttattctccttatggt 84293 Query: 655 agaggacgatcatactctcgtcatgacaggcatagatcatactccccctatggaaggagg 714 ||| | |||||||| |||| | |||||| ||||||||||||||||||| ||| | Sbjct: 84292 agaaggcgatcatattctccatacaacaggcgaagatcatactccccctatgagaggcgt 84233 Query: 715 ccatcctactccccctatgaaaggaggccatcctactctccctatggcaga 765 ||||||||| || |||||||||| | ||||||||||| ||||||||| Sbjct: 84232 agatcctactctccacatgaaaggagacagtcctactctccgtatggcaga 84182 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Minus Query: 1114 aagaggcgttctagagaaagctatgcgcacagccgcagttcatgctcgaggtccgtctcc 1173 ||||||| |||||| || ||||| | |||||||||||||| | ||| ||||| |||||| Sbjct: 83848 aagaggcattctagggagagctactctcacagccgcagttcctactcaaggtctgtctcc 83789 Query: 1174 agggagcgctca 1185 |||||||||||| Sbjct: 83788 agggagcgctca 83777 Score = 56.0 bits (28), Expect = 4e-04 Identities = 50/56 (89%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 441 tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaaggg 496 ||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||| Sbjct: 84754 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaaggg 84700 Score = 48.1 bits (24), Expect = 0.088 Identities = 48/56 (85%) Strand = Plus / Minus Query: 499 aagagaagacgaggtcgaaccccaacaccgggaaggtaccttggcagcaaatcatc 554 ||||||||||| |||||||| ||||| || |||||||| || |||| |||||||| Sbjct: 84580 aagagaagacgtggtcgaacaccaacgcccggaaggtatctaggcacaaaatcatc 84525
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1078 agcaaggcatcgcgcagcaggtcacc 1103 |||||||||||||||| ||||||||| Sbjct: 352179 agcaaggcatcgcgcaccaggtcacc 352154
>emb|CR933786.10| Zebrafish DNA sequence from clone CH211-44M8 in linkage group 11, complete sequence Length = 50720 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 aaaaatgcagaaaatttccta 1357 ||||||||||||||||||||| Sbjct: 23252 aaaaatgcagaaaatttccta 23272
>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence Length = 1108 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 290 tcacggggatttggatttgttaccatggc 318 |||||||||||||| |||||||| ||||| Sbjct: 320 tcacggggatttggttttgttactatggc 292
>ref|XM_705696.1| Candida albicans SC5314 hypothetical protein (CaO19.3758), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1282 tgtatttcgtcatcgttaacatctt 1306 |||||||| |||||||||||||||| Sbjct: 1190 tgtatttcttcatcgttaacatctt 1166
>ref|XM_705683.1| Candida albicans SC5314 hypothetical protein (CaO19.11242), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1282 tgtatttcgtcatcgttaacatctt 1306 |||||||| |||||||||||||||| Sbjct: 1190 tgtatttcttcatcgttaacatctt 1166
>ref|XM_504178.1| Yarrowia lipolytica CLIB122, YALI0E20207g predicted mRNA Length = 1395 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gaagacagagactcgagaggc 80 ||||||||||||||||||||| Sbjct: 983 gaagacagagactcgagaggc 963
>gb|AC120150.9| Mus musculus chromosome 16, clone RP24-241C15, complete sequence Length = 166172 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 caaccaaagggcaaagagaag 506 ||||||||||||||||||||| Sbjct: 156729 caaccaaagggcaaagagaag 156709
>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence Length = 162258 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1035 agaagaatcaaggagctgttc 1055 ||||||||||||||||||||| Sbjct: 102941 agaagaatcaaggagctgttc 102961
>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2 Contains a ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene (LOC286472) and a CpG island, complete sequence Length = 137111 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1299 aacatcttaaattgcagtctg 1319 ||||||||||||||||||||| Sbjct: 99903 aacatcttaaattgcagtctg 99923
>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein Length = 1139 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 ggatttggatttgttaccatg 316 ||||||||||||||||||||| Sbjct: 502 ggatttggatttgttaccatg 522
>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence Length = 219420 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 caaccaaagggcaaagagaag 506 ||||||||||||||||||||| Sbjct: 157678 caaccaaagggcaaagagaag 157698
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1182 ctcaacctcatcaagcacctg 1202 ||||||||||||||||||||| Sbjct: 1782677 ctcaacctcatcaagcacctg 1782657
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 gaagacagagactcgagaggc 80 ||||||||||||||||||||| Sbjct: 2399129 gaagacagagactcgagaggc 2399109
>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) Length = 1251 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 290 tcacggggatttggatttgttaccatggc 318 |||||||||||||| |||||||| ||||| Sbjct: 898 tcacggggatttggttttgttactatggc 926 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 222,136,304 Number of extensions: 11418351 Number of successful extensions: 198351 Number of sequences better than 10.0: 21 Number of HSP's gapped: 198326 Number of HSP's successfully gapped: 51 Length of query: 1421 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1398 Effective length of database: 18,503,978,556 Effective search space: 25868562021288 Effective search space used: 25868562021288 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
