ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf67l09 |
|---|---|
| Clone Library Name | barley_pub |
>Q6DG43:UBTD2_DANRE Ubiquitin domain-containing protein 2 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 240 Score = 105 bits (261), Expect = 3e-22 Identities = 52/101 (51%), Positives = 68/101 (67%), Gaps = 5/101 (4%) Frame = +1 Query: 169 LRKPKP-WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQT 333 L++ KP WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA +A D LAQ Sbjct: 32 LKREKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQAFESNDHELAQA 91 Query: 334 IVDSAGIIVSNPDLTLCYDERGAKYELPNYVLSEPTNLVRD 456 I+D A I + + LT CYDE G +Y+LP Y LS P N++ + Sbjct: 92 IIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIEE 132
>Q4V8W7:UBTD1_DANRE Ubiquitin domain-containing protein 1 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 227 Score = 105 bits (261), Expect = 3e-22 Identities = 54/101 (53%), Positives = 67/101 (66%), Gaps = 5/101 (4%) Frame = +1 Query: 169 LRKPKP-WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQT 333 L+K KP WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ Sbjct: 30 LKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAVALECSDHELAQA 89 Query: 334 IVDSAGIIVSNPDLTLCYDERGAKYELPNYVLSEPTNLVRD 456 IVD A I + + LT CYDE G +Y+LP Y L+ P NL+ + Sbjct: 90 IVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130
>Q6GL38:UBTD1_XENTR Ubiquitin domain-containing protein 1 - Xenopus tropicalis (Western| clawed frog) (Silurana tropicalis) Length = 240 Score = 104 bits (260), Expect = 5e-22 Identities = 55/114 (48%), Positives = 72/114 (63%), Gaps = 5/114 (4%) Frame = +1 Query: 130 AGSTPKVDESSKNLRKPKP-WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAAT 306 +G K ++ L+K +P WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA Sbjct: 20 SGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAA 79 Query: 307 EA----DLTLAQTIVDSAGIIVSNPDLTLCYDERGAKYELPNYVLSEPTNLVRD 456 A D LAQ IVD A I + + LT CYDE G +Y+LP Y L+ P NL+ + Sbjct: 80 FAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLIME 133
>Q8WUN7:UBTD2_HUMAN Ubiquitin domain-containing protein 2 - Homo sapiens (Human)| Length = 234 Score = 104 bits (259), Expect = 6e-22 Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 19/130 (14%) Frame = +1 Query: 124 GCAG----STPKVDESSKN----------LRKPKP-WKHTQPITPAQLKQMRDEFWDTAP 258 GC G S+ ++E+S+ L+K KP WK P+T QL+ RDEFWDTAP Sbjct: 3 GCVGAQHDSSGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 62 Query: 259 HYGGQKEIWDALQAATEA----DLTLAQTIVDSAGIIVSNPDLTLCYDERGAKYELPNYV 426 + G+KEIWDAL+AA A D LAQ I+D A I + + LT CYDE G +Y+LP Y Sbjct: 63 AFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYC 122 Query: 427 LSEPTNLVRD 456 L+ P N++ + Sbjct: 123 LAPPINMIEE 132
>Q5EAE3:UBTD2_BOVIN Ubiquitin domain-containing protein 2 - Bos taurus (Bovine)| Length = 234 Score = 104 bits (259), Expect = 6e-22 Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 19/130 (14%) Frame = +1 Query: 124 GCAG----STPKVDESSKN----------LRKPKP-WKHTQPITPAQLKQMRDEFWDTAP 258 GC G S+ ++E+S+ L+K KP WK P+T QL+ RDEFWDTAP Sbjct: 3 GCVGAQHDSSGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 62 Query: 259 HYGGQKEIWDALQAATEA----DLTLAQTIVDSAGIIVSNPDLTLCYDERGAKYELPNYV 426 + G+KEIWDAL+AA A D LAQ I+D A I + + LT CYDE G +Y+LP Y Sbjct: 63 AFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYC 122 Query: 427 LSEPTNLVRD 456 L+ P N++ + Sbjct: 123 LAPPINMIEE 132
>Q6PGH0:UBTD2_MOUSE Ubiquitin domain-containing protein 2 - Mus musculus (Mouse)| Length = 234 Score = 103 bits (258), Expect = 8e-22 Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 5/101 (4%) Frame = +1 Query: 169 LRKPKP-WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQT 333 L+K KP WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ Sbjct: 32 LKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQA 91 Query: 334 IVDSAGIIVSNPDLTLCYDERGAKYELPNYVLSEPTNLVRD 456 I+D A I + + LT CYDE G +Y+LP Y L+ P N++ + Sbjct: 92 IIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
>Q640W6:UBTD1_XENLA Ubiquitin domain-containing protein 1 - Xenopus laevis (African| clawed frog) Length = 234 Score = 103 bits (258), Expect = 8e-22 Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 5/101 (4%) Frame = +1 Query: 169 LRKPKP-WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQT 333 L+K KP WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ Sbjct: 32 LKKDKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQA 91 Query: 334 IVDSAGIIVSNPDLTLCYDERGAKYELPNYVLSEPTNLVRD 456 I+D A I + + LT CYDE G +Y+LP Y L+ P N++ + Sbjct: 92 IIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINMIEE 132
>Q68FV8:UBTD1_RAT Ubiquitin domain-containing protein 1 - Rattus norvegicus (Rat)| Length = 227 Score = 97.4 bits (241), Expect = 7e-20 Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 4/92 (4%) Frame = +1 Query: 187 WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQTIVDSAGI 354 WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ I+D A I Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95 Query: 355 IVSNPDLTLCYDERGAKYELPNYVLSEPTNLV 450 + + L CYDE G +Y+LP Y LS P NL+ Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLL 127
>Q91WB7:UBTD1_MOUSE Ubiquitin domain-containing protein 1 - Mus musculus (Mouse)| Length = 227 Score = 97.4 bits (241), Expect = 7e-20 Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 4/92 (4%) Frame = +1 Query: 187 WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQTIVDSAGI 354 WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ I+D A I Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95 Query: 355 IVSNPDLTLCYDERGAKYELPNYVLSEPTNLV 450 + + L CYDE G +Y+LP Y LS P NL+ Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLL 127
>Q9HAC8:UBTD1_HUMAN Ubiquitin domain-containing protein 1 - Homo sapiens (Human)| Length = 227 Score = 97.4 bits (241), Expect = 7e-20 Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 4/92 (4%) Frame = +1 Query: 187 WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQTIVDSAGI 354 WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ I+D A I Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95 Query: 355 IVSNPDLTLCYDERGAKYELPNYVLSEPTNLV 450 + + L CYDE G +Y+LP Y LS P NL+ Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLL 127
>Q3ZBQ1:UBTD1_BOVIN Ubiquitin domain-containing protein 1 - Bos taurus (Bovine)| Length = 227 Score = 97.4 bits (241), Expect = 7e-20 Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 4/92 (4%) Frame = +1 Query: 187 WKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAATEA----DLTLAQTIVDSAGI 354 WK P+T QL+ RDEFWDTAP + G+KEIWDAL+AA A D LAQ I+D A I Sbjct: 36 WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASI 95 Query: 355 IVSNPDLTLCYDERGAKYELPNYVLSEPTNLV 450 + + L CYDE G +Y+LP Y LS P NL+ Sbjct: 96 TLPHGTLCECYDELGNRYQLPIYCLSPPVNLL 127
>Q9HDW4:YFW7_SCHPO Uncharacterized protein PB2B4.07 - Schizosaccharomyces pombe| (Fission yeast) Length = 239 Score = 56.2 bits (134), Expect = 2e-07 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%) Frame = +1 Query: 124 GCAGSTPKVDESSKNLRKPKPWKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWDALQAA 303 G A + + S LR PK + +T +++ R+EFW+T YGG KEIWD L Sbjct: 12 GVANNGGEQPSGSNILRLPKLYTPNPLLTKEEVEVRRNEFWETCWAYGGSKEIWDVLHKV 71 Query: 304 T----EADLTLAQTIVDSAGIIVSNPDLTL-CYDERGAKYELPNYVLSEP 438 E + A + +A + + D++ YD +G YE+P V P Sbjct: 72 VTLLYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARIP 121
>Q5UQA1:YR535_MIMIV Uncharacterized protein R535 - Mimivirus| Length = 356 Score = 32.3 bits (72), Expect = 2.8 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Frame = -3 Query: 456 ITDQVCGLTQNIIRQFILRTSLVVTKREVRIRNDDSSTVHYGLRKS*ISFCRGLKRIPNL 277 +TD L I+ Q++ + V +++ + + ++ T Y L+K S C +KRI NL Sbjct: 128 MTDSEMALKNKIVHQYVKNPNNVTLYKKI-LESINTITTKYNLQKIQESLCSEIKRIDNL 186 Query: 276 FLSAI-----VWSRVPEFITHL 226 +++ + + + ITHL Sbjct: 187 LVNSYQKELDKTTNLTKIITHL 208
>Q6C9M9:EAF3_YARLI Chromatin modification-related protein EAF3 - Yarrowia lipolytica| (Candida lipolytica) Length = 387 Score = 32.0 bits (71), Expect = 3.7 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +1 Query: 118 AMGCAGSTPKVDESSKNLRKPKPWKHTQPITPAQLKQMRDEFWDTAPHYGGQKEIWD 288 ++ AG+TP D+S+ R P K +P PA L ++ HY G K WD Sbjct: 63 SLPAAGATPDGDDSNDKNRHFSP-KEGKPDVPADLADENEDKICYYVHYKGWKNTWD 118 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 154,976,510 Number of extensions: 3291075 Number of successful extensions: 8299 Number of sequences better than 10.0: 14 Number of HSP's gapped: 8285 Number of HSP's successfully gapped: 14 Length of query: 313 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 200 Effective length of database: 69,691,104 Effective search space: 13938220800 Effective search space used: 13938220800 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
