>Q93W77:NIFU1_ARATH NifU-like protein 1, chloroplast precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 231
 Score =  104 bits (259), Expect = 7e-22
 Identities = 49/63 (77%), Positives = 57/63 (90%)
 Frame = +2

Query: 650 LQAVNRHLDILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDITNV 829
           ++AVN HLDILRPAI NYGGSVEVL+V+GEDC+VKY GPESIG G++AAIKEKF DI+NV
Sbjct: 168 VEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNV 227

Query: 830 VFT 838
            FT
Sbjct: 228 TFT 230



 Score =  102 bits (255), Expect = 2e-21
 Identities = 50/79 (63%), Positives = 59/79 (74%)
 Frame = +3

Query: 279 TYELTPDNVDRVLDDVRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIE 458
           T++LTP NVD VL+DVRP+LI                 L+L+GAC+SCPSS+TTM MGIE
Sbjct: 82  TFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIE 141

Query: 459 RVLKEKFGDAIKDIRQVFD 515
           RVLKEKFGDA+KDIRQVFD
Sbjct: 142 RVLKEKFGDALKDIRQVFD 160

>Q84LK7:NIFU1_ORYSJ NifU-like protein 1, chloroplast precursor - Oryza sativa subsp.|
           japonica (Rice)
          Length = 226

 Score = 58.9 bits (141), Expect(2) = 1e-10
 Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 288 LTPDNVDRVLDDVRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVL 467
           LT  NV+ VLD VRPYL                  L+L+GAC SCPSS  T+  GIER L
Sbjct: 75  LTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRL 134

Query: 468 KEKFGD--AIKDIRQVFDGDQQPEETTPEV 551
            EK  D  A++ +     G +  EE   +V
Sbjct: 135 MEKIPDVAAVEPVTDKETGLELNEENVEKV 164



 Score = 28.1 bits (61), Expect(2) = 1e-10
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +2

Query: 659 VNRHLDILRPAIANYGGS-VEVLAVDGEDCLVKYDGPESIGSGVKAAI----KEKFPDI 820
           V + L+ +RP +A  GG  ++ L + G    V+  GP ++   V+ A+    +EK P I
Sbjct: 161 VEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSI 219

>Q93W20:NIFU2_ARATH NifU-like protein 2, chloroplast precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 235

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 31/68 (45%), Positives = 41/68 (60%)
 Frame = +3

Query: 288 LTPDNVDRVLDDVRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVL 467
           LT +NV+ VLD++RPYL+                 ++L+GAC SCPSST TM MGIER L
Sbjct: 85  LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144

Query: 468 KEKFGDAI 491
            EK  + +
Sbjct: 145 MEKIPEIV 152

>Q84RQ7:NIFU3_ARATH NifU-like protein 3, chloroplast precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 236

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 31/78 (39%), Positives = 45/78 (57%)
 Frame = +3

Query: 288 LTPDNVDRVLDDVRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVL 467
           LT +NV+RVLD+VRP L+                 L+L+GAC SCPSS+ T+ MGIE  L
Sbjct: 84  LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143

Query: 468 KEKFGDAIKDIRQVFDGD 521
           ++K  + I  + Q  + +
Sbjct: 144 RDKIPE-IMSVEQFLESE 160



 Score = 33.9 bits (76), Expect = 1.1
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
 Frame = +2

Query: 659 VNRHLDILRPAIANYGGSVEVLAVDGEDCLVKYDG-----PES---IGSGVKAAIKEKFP 814
           V R LD +RP++   GG+V +  +DG   ++K  G     P S   +  G+++ +++K P
Sbjct: 89  VERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIP 148

Query: 815 DITNV-VFTQ*STGRL 859
           +I +V  F +  TG L
Sbjct: 149 EIMSVEQFLESETGGL 164

>Q9C8J2:NIFU5_ARATH NifU-like protein 5, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 275

 Score = 48.1 bits (113), Expect = 6e-05
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTP 545
           LR++GACS CPSS+ T+  GIE +L   +   +K + Q FDG+++   + P
Sbjct: 224 LRMQGACSGCPSSSVTLKSGIENMLMH-YVSEVKGVEQEFDGEEEGTSSGP 273

>Q9LIG6:NIFU4_ARATH NifU-like protein 4, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 283

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEVQ 554
           LR++GACS CPSS+ T+  GIE +L   +   +K + Q FDG+ +    + E++
Sbjct: 229 LRMQGACSGCPSSSVTLKSGIENMLMH-YVSEVKGVEQEFDGEDEEGTLSGEMR 281

>P32860:NFU1_YEAST NifU-like protein, mitochondrial precursor - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 256

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 527
           LRL+GAC+SC SS  T+  GIE +LK  + D +K++ Q+ D +Q+
Sbjct: 190 LRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233

>P33179:NIFU_ANASL Nitrogen fixation protein nifU - Anabaena sp. (strain L31)|
          Length = 112

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 303 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 479
           + +VLD+ VRP LI                 + L+GAC SCPSST T+ + IE  L+++ 
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 480 GDAI 491
             ++
Sbjct: 104 NPSL 107

>Q9QZ23:NFU1_MOUSE NFU1 iron-sulfur cluster scaffold homolog - Mus musculus (Mouse)|
          Length = 199

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 536
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D D+  E+
Sbjct: 148 LKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194

>P20628:NIFU_ANASP Nitrogen fixation protein nifU - Anabaena sp. (strain PCC 7120)|
          Length = 300

 Score = 38.5 bits (88), Expect = 0.045
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 303 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 479
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 480 GDAI 491
             ++
Sbjct: 292 NPSL 295

>Q43885:NIFU_ANAAZ Nitrogen fixation protein nifU - Anabaena azollae|
          Length = 300

 Score = 38.5 bits (88), Expect = 0.045
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 303 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 479
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 480 GDAI 491
             ++
Sbjct: 292 NPSL 295

>Q9UMS0:NFU1_HUMAN NFU1 iron-sulfur cluster scaffold homolog - Homo sapiens (Human)|
          Length = 196

 Score = 38.5 bits (88), Expect = 0.045
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 536
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D +   +E
Sbjct: 146 LKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192

>Q9UUB8:YH9J_SCHPO NifU-like protein C1709.19c - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 260

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEVQGLPPPE 572
           L+L GAC +C SS  T+  GI+++LK      I ++  V             VQ L P E
Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKH----YIPEVENV-------------VQVLDPEE 236

Query: 573 QISVSYFCLERLEKQCN 623
           +++++ F  E+ E++ N
Sbjct: 237 EVAIAEF--EKFEQRIN 251

>Q00241:NIFU_PLEBO Nitrogen fixation protein nifU - Plectonema boryanum|
          Length = 205

 Score = 35.0 bits (79), Expect = 0.50
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 303 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLK 470
           + +VLD+ VRP LI                 + L+GAC SC SST T+   +E  L+
Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLR 193

>Q5QZC8:GNTY_IDILO Protein gntY - Idiomarina loihiensis|
          Length = 192

 Score = 35.0 bits (79), Expect = 0.50
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFD 515
           L+  G C+ C     T+  GIE+ L E+F + +K +R + D
Sbjct: 143 LQFGGGCNGCSMIDVTLKNGIEKELLERFPEEVKGVRDITD 183

>Q88KB2:Y2378_PSEPK Uncharacterized protein PP_2378 - Pseudomonas putida (strain|
           KT2440)
          Length = 194

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 527
           L+  G C  C  +  T+  GIER L E+  + +K +R V D  Q+
Sbjct: 146 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189

>Q9SRR1:FBL12_ARATH F-box/LRR-repeat protein 12 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 395

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 704 GGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIK 802
           GG +E L + G  C ++ DG   IGSG+ + ++
Sbjct: 240 GGGIEFLNISGVSCYIRKDGLVPIGSGIASKLR 272

>Q43909:NIFU_AZOBR Nitrogen fixation protein nifU - Azospirillum brasilense|
          Length = 310

 Score = 31.6 bits (70), Expect = 5.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 393 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 494
           +RL GACS C  S  TM MG++  L E  G+ ++
Sbjct: 267 VRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299

>Q6ZQ93:UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 - Mus musculus (Mouse)|
          Length = 3393

 Score = 30.8 bits (68), Expect = 9.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 410 VQQLSQLDDDDEHGH---RASAQGEVR*RHQGHPPGVRRGPATRRDDA*GSGAAT 565
           ++ L + DDDD+HGH   + +   E+R R   +P G+  G +    +  G+ + T
Sbjct: 465 IEALKEEDDDDDHGHNPAKNTCGTELRNRKLENPAGICLGESQGTSERNGTNSGT 519

>Q0P5J0:QRIC1_BOVIN Glutamine-rich protein 1 - Bos taurus (Bovine)|
          Length = 779

 Score = 30.8 bits (68), Expect = 9.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 507 VFDGDQQPEETTPEVQGLPPPEQ 575
           ++D  QQP++ TP+ Q  PPP+Q
Sbjct: 416 IWDPQQQPQQQTPQEQTPPPPQQ 438

>O08307:DPO1_CHLAU DNA polymerase I - Chloroflexus aurantiacus|
          Length = 942

 Score = 30.8 bits (68), Expect = 9.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +2

Query: 650 LQAVNRHLDILRPAIAN-YGGSVEVLAVDGEDCLVKYDG--PESIGS--GVKAAIKEKFP 814
           LQ VN H+   R A+AN YGG   V   D E    +YDG  P+ +    G+K    +  P
Sbjct: 140 LQLVNDHV---RVALANPYGGKTSVTLYDLEQVRKRYDGLEPDQLADLRGLKGDTSDNIP 196

Query: 815 DITNV 829
            +  +
Sbjct: 197 GVRGI 201


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 170,294,033
Number of extensions: 3616368
Number of successful extensions: 10541
Number of sequences better than 10.0: 21
Number of HSP's gapped: 10534
Number of HSP's successfully gapped: 24
Length of query: 341
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 227
Effective length of database: 69,416,809
Effective search space: 15757615643
Effective search space used: 15757615643
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)