ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62i10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832741.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN058D24, full insert sequence Length = 957 Score = 305 bits (154), Expect = 2e-79 Identities = 235/262 (89%) Strand = Plus / Plus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 225 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 284 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 285 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 344 Query: 375 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 434 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 345 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 404 Query: 435 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 494 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 405 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 464 Query: 495 gacatccgccaggtgttcgacg 516 || ||||||||||||||||||| Sbjct: 465 gatatccgccaggtgttcgacg 486 Score = 218 bits (110), Expect = 3e-53 Identities = 167/186 (89%) Strand = Plus / Plus Query: 650 ttgcaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcggg 709 ||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 587 ttgcaggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcggg 646 Query: 710 agtgtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagag 769 || ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||| Sbjct: 647 agcgtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgag 706 Query: 770 tccatcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtg 829 ||||||||||| || | ||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 707 tccatcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtg 766 Query: 830 gtgttc 835 |||||| Sbjct: 767 gtgttc 772
>ref|NM_001056470.1| Oryza sativa (japonica cultivar-group) Os03g0314700 (Os03g0314700) mRNA, complete cds Length = 1151 Score = 305 bits (154), Expect = 2e-79 Identities = 235/262 (89%) Strand = Plus / Plus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 253 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 312 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 313 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 372 Query: 375 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 434 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 373 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 432 Query: 435 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 494 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 433 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 492 Query: 495 gacatccgccaggtgttcgacg 516 || ||||||||||||||||||| Sbjct: 493 gatatccgccaggtgttcgacg 514 Score = 212 bits (107), Expect = 2e-51 Identities = 164/183 (89%) Strand = Plus / Plus Query: 653 caggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagt 712 |||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 544 caggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagc 603 Query: 713 gtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcc 772 ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| |||||| Sbjct: 604 gtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcc 663 Query: 773 atcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtg 832 |||||||| || | ||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 664 atcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtg 723 Query: 833 ttc 835 ||| Sbjct: 724 ttc 726
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence Length = 1154 Score = 305 bits (154), Expect = 2e-79 Identities = 235/262 (89%) Strand = Plus / Plus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 256 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 315 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 316 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 375 Query: 375 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 434 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 376 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 435 Query: 435 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 494 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 436 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 495 Query: 495 gacatccgccaggtgttcgacg 516 || ||||||||||||||||||| Sbjct: 496 gatatccgccaggtgttcgacg 517 Score = 212 bits (107), Expect = 2e-51 Identities = 164/183 (89%) Strand = Plus / Plus Query: 653 caggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagt 712 |||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 547 caggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagc 606 Query: 713 gtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcc 772 ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| |||||| Sbjct: 607 gtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcc 666 Query: 773 atcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtg 832 |||||||| || | ||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 667 atcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtg 726 Query: 833 ttc 835 ||| Sbjct: 727 ttc 729
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 218 bits (110), Expect = 3e-53 Identities = 167/186 (89%) Strand = Plus / Plus Query: 650 ttgcaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcggg 709 ||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 24678 ttgcaggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcggg 24737 Query: 710 agtgtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagag 769 || ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||| Sbjct: 24738 agcgtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgag 24797 Query: 770 tccatcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtg 829 ||||||||||| || | ||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 24798 tccatcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtg 24857 Query: 830 gtgttc 835 |||||| Sbjct: 24858 gtgttc 24863 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 24186 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 24245 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 24246 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 24305 Query: 375 gaggacggcgtcgtctccct 394 |||||||||||| ||||||| Sbjct: 24306 gaggacggcgtcatctccct 24325 Score = 137 bits (69), Expect = 9e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 408 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 467 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 24469 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 24528 Query: 468 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 516 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 24529 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 24577
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 218 bits (110), Expect = 3e-53 Identities = 167/186 (89%) Strand = Plus / Minus Query: 650 ttgcaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcggg 709 ||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 35323 ttgcaggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcggg 35264 Query: 710 agtgtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagag 769 || ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||| Sbjct: 35263 agcgtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgag 35204 Query: 770 tccatcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtg 829 ||||||||||| || | ||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 35203 tccatcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtg 35144 Query: 830 gtgttc 835 |||||| Sbjct: 35143 gtgttc 35138 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Minus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 35815 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 35756 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 35755 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 35696 Query: 375 gaggacggcgtcgtctccct 394 |||||||||||| ||||||| Sbjct: 35695 gaggacggcgtcatctccct 35676 Score = 137 bits (69), Expect = 9e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 408 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 467 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 35532 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 35473 Query: 468 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 516 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 35472 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 35424
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 218 bits (110), Expect = 3e-53 Identities = 167/186 (89%) Strand = Plus / Plus Query: 650 ttgcaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcggg 709 ||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 11242488 ttgcaggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcggg 11242547 Query: 710 agtgtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagag 769 || ||||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||| Sbjct: 11242548 agcgtggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgag 11242607 Query: 770 tccatcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtg 829 ||||||||||| || | ||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 11242608 tccatcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtg 11242667 Query: 830 gtgttc 835 |||||| Sbjct: 11242668 gtgttc 11242673 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 11241996 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11242055 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 11242056 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11242115 Query: 375 gaggacggcgtcgtctccct 394 |||||||||||| ||||||| Sbjct: 11242116 gaggacggcgtcatctccct 11242135 Score = 137 bits (69), Expect = 9e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 408 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 467 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 11242279 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11242338 Query: 468 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 516 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 11242339 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11242387
>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence Length = 844 Score = 204 bits (103), Expect = 5e-49 Identities = 220/261 (84%) Strand = Plus / Minus Query: 255 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 314 |||| ||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||||||| Sbjct: 762 ggagncggcctctactcggcggcgacgtacgagctgaccccggaaaacgtcgaccgcgtc 703 Query: 315 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 374 || |||||||| || || ||||||||||| ||| | ||||| ||||||| |||| Sbjct: 702 ctggacgacgtccggccgtacctcatctctgacnnnnncaacgtcaccgtcgttgccgtc 643 Query: 375 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 434 |||||||| ||| ||||||| | ||| ||||| || ||| |||| || ||||||| |||| Sbjct: 642 gaggacggtgtcatctccctcaagctcgaaggagcttgcggcagctgccccagcttgacg 583 Query: 435 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 494 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| Sbjct: 582 acgacgatgaatatgggcatcgagcgtgtgctcaaggagaagttcggcgacgctttcaag 523 Query: 495 gacatccgccaggtgttcgac 515 || ||||| |||||||||||| Sbjct: 522 gaaatccgtcaggtgttcgac 502 Score = 178 bits (90), Expect = 3e-41 Identities = 162/186 (87%) Strand = Plus / Minus Query: 654 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 713 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct: 470 aggcggtgaaccggcacctggacatactgcggccagcgatcgcgaactacggcgggagcg 411 Query: 714 tggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcca 773 |||| ||| | ||||| || ||||||||||||||||| | ||||||||| || || |||| Sbjct: 410 tggatgtgttggccgtcgatggcgaggactgcctggtgaggtacgacgggccggaatcca 351 Query: 774 tcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgt 833 |||| || || | ||||| |||||||||||||| ||||| |||||||| | |||||||| Sbjct: 350 tcggcagcggtatcaaggcggccatcaaggagaaattcccggacatcaccagtgtggtgt 291 Query: 834 tcaccc 839 | |||| Sbjct: 290 ttaccc 285
>gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA, partial cds Length = 636 Score = 60.0 bits (30), Expect = 2e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 327 cgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgtagaggacggcgtc 386 |||||||| |||||| | || ||||| ||||||| ||| |||||||| |||||||||||| Sbjct: 43 cgcccctatctcatcgctgatggcggtgacgtcgacgttgtgtccgttgaggacggcgtc 102 Query: 387 gt 388 || Sbjct: 103 gt 104
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 50.1 bits (25), Expect = 0.016 Identities = 55/65 (84%) Strand = Plus / Minus Query: 296 ggataacgtcgaccgcgtcctcgacgacgtgcgcccctacctcatctccgacggcggcga 355 |||||||||||| | ||||||||||| |||||||||| | || |||||||||||| | Sbjct: 3071251 ggataacgtcgagctggtcctcgacgaattgcgcccctatttgatgtccgacggcggcaa 3071192 Query: 356 cgtcg 360 ||||| Sbjct: 3071191 cgtcg 3071187
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 agttgtcccagctcgacgacga 438 |||||||||||||||||||||| Sbjct: 3863412 agttgtcccagctcgacgacga 3863391
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.98 Identities = 43/50 (86%) Strand = Plus / Plus Query: 311 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 360 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 1180629 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 1180678
>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys, end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006, sek0007, sek0008, sek0009, sek0010, sek0011, sek0012, sel0013, sek0016, sel0017, sek0018, sel0019, sek0020, sek0022, sek0024, sek0025, sek0026, sek0027, sel0028, sek0030, sek0031, sel0032, sel0033, sel0034, sel0035, sel0036, sel0037, sel0039, sek0041, sek0043, sek0044, sek0045, psba-I gene, sek0047 and sel0048 (partial) genes Length = 42558 Score = 44.1 bits (22), Expect = 0.98 Identities = 43/50 (86%) Strand = Plus / Plus Query: 311 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 360 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 14915 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 14964
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 341 ctccgacggcggcgacgtcgcc 362 |||||||||||||||||||||| Sbjct: 317729 ctccgacggcggcgacgtcgcc 317750
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 417 agttgtcccagctcgacgacga 438 |||||||||||||||||||||| Sbjct: 3864086 agttgtcccagctcgacgacga 3864065
>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence Length = 28155 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 795 ccatcaaggagaagttccccga 816 |||||||||||||||||||||| Sbjct: 19253 ccatcaaggagaagttccccga 19232
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.98 Identities = 43/50 (86%) Strand = Plus / Minus Query: 311 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 360 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 440251 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 440202
>ref|XM_001032436.1| Tetrahymena thermophila SB210 Kinesin motor domain containing protein (TTHERM_00637750) mRNA, complete cds Length = 4788 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 979 atggaaaatgaaatggagtaatttt 1003 |||||||||||| |||||||||||| Sbjct: 2614 atggaaaatgaattggagtaatttt 2638
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 ccgacggcggcgacgtcgccg 363 ||||||||||||||||||||| Sbjct: 3288105 ccgacggcggcgacgtcgccg 3288125
>ref|XM_001180788.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA (LOC575541), mRNA Length = 4755 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 atctccgacggcggcgacgtc 359 ||||||||||||||||||||| Sbjct: 1545 atctccgacggcggcgacgtc 1525
>ref|XM_775936.2| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA (LOC575541), mRNA Length = 4755 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 atctccgacggcggcgacgtc 359 ||||||||||||||||||||| Sbjct: 1545 atctccgacggcggcgacgtc 1525
>ref|NM_001070604.1| Oryza sativa (japonica cultivar-group) Os10g0123200 (Os10g0123200) mRNA, complete cds Length = 1686 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 342 tccgacggcggcgacgtcgccgtcg 366 |||||||||||||| |||||||||| Sbjct: 73 tccgacggcggcgaggtcgccgtcg 49
>gb|BT027946.1| Gasterosteus aculeatus clone CNB77-B05 mRNA sequence Length = 1651 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 795 ccatcaaggagaagttccccg 815 ||||||||||||||||||||| Sbjct: 233 ccatcaaggagaagttccccg 253
>gb|BT027034.1| Gasterosteus aculeatus clone CFW156-B09 mRNA sequence Length = 1656 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 795 ccatcaaggagaagttccccg 815 ||||||||||||||||||||| Sbjct: 261 ccatcaaggagaagttccccg 281
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 656 gcggtgaaccggcacctggac 676 ||||||||||||||||||||| Sbjct: 7470688 gcggtgaaccggcacctggac 7470708
>gb|AC113550.11| Mus musculus chromosome 6, clone RP23-275L12, complete sequence Length = 203865 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 985 aatgaaatggagtaatttttg 1005 ||||||||||||||||||||| Sbjct: 51466 aatgaaatggagtaatttttg 51486
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 794 gccatcaaggagaagttccccgacatcac 822 |||||||||||||||| ||| |||||||| Sbjct: 739377 gccatcaaggagaagtacccagacatcac 739405
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 342 tccgacggcggcgacgtcgccgtcg 366 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ataacgtcgaccgcgtcctcg 318 ||||||||||||||||||||| Sbjct: 869679 ataacgtcgaccgcgtcctcg 869699
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 342 tccgacggcggcgacgtcgccgtcg 366 |||||||||||||| |||||||||| Sbjct: 71365 tccgacggcggcgaggtcgccgtcg 71341
>gb|AC111149.4| Homo sapiens chromosome 8, clone RP11-434I12, complete sequence Length = 135213 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 gcgttcattggatgtgttgct 650 ||||||||||||||||||||| Sbjct: 116365 gcgttcattggatgtgttgct 116385
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 342 tccgacggcggcgacgtcgccgtcg 366 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chromosome 1 Contains four novel genes, a novel gene (MGC57827), a ribosomal protein L22 (RPL22) pseudogene, a histone 2 H3c (HIST2H3C) pseudogene, the HIST2H2BB gene for histone 2 H2bb, the FCGR1B gene for Fc fragment of IgG high affinity Ib receptor for (CD64) and three CpG islands, complete sequence Length = 189539 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 945 tgtttcctttgggtagaaaaa 965 ||||||||||||||||||||| Sbjct: 114439 tgtttcctttgggtagaaaaa 114419
>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full insert sequence Length = 1686 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 342 tccgacggcggcgacgtcgccgtcg 366 |||||||||||||| |||||||||| Sbjct: 73 tccgacggcggcgaggtcgccgtcg 49
>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a, complete sequence Length = 54472 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 896 tacgaaatacaacaagatttt 916 ||||||||||||||||||||| Sbjct: 25216 tacgaaatacaacaagatttt 25196
>gb|AY566569.1| Felis catus myocilin mRNA, complete cds Length = 2125 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ggacatccgccaggtgttcga 514 ||||||||||||||||||||| Sbjct: 943 ggacatccgccaggtgttcga 963
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 ccgacggcggcgacgtcgccg 363 ||||||||||||||||||||| Sbjct: 1373632 ccgacggcggcgacgtcgccg 1373612 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 139,203,268 Number of extensions: 7109750 Number of successful extensions: 175362 Number of sequences better than 10.0: 36 Number of HSP's gapped: 175362 Number of HSP's successfully gapped: 46 Length of query: 1025 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1002 Effective length of database: 18,503,978,556 Effective search space: 18540986513112 Effective search space used: 18540986513112 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
