ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf64o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P61406:EST1A_MOUSE Telomerase-binding protein EST1A - Mus muscul... 34 1.1
2Q8EK30:CAPP_SHEON Phosphoenolpyruvate carboxylase - Shewanella o... 34 1.4
3P06293:PRTZ_HORVU Protein Z - Hordeum vulgare (Barley) 32 4.0
4Q96PK2:MACF4_HUMAN Microtubule-actin cross-linking factor 1, iso... 32 5.2
5Q9UPN3:MACF1_HUMAN Microtubule-actin cross-linking factor 1, iso... 32 5.2

>P61406:EST1A_MOUSE Telomerase-binding protein EST1A - Mus musculus (Mouse)|
          Length = 1418
 Score = 34.3 bits (77), Expect = 1.1
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = -2

Query: 1027 AEDHPSGRKIVMR*HTQRTNTRILFRMCQGSISGSGSEHKGPGSTSAGCRQGRRRNAARD 848
            A+D   G+   ++ +++    R  +R C  S +GS +  +G G T  GCR+ RR++ A++
Sbjct: 229  ADDSVPGKPGSVKRYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTDNGCRR-RRQDRAKE 287

Query: 847  ISR 839
              R
Sbjct: 288  RPR 290



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>Q8EK30:CAPP_SHEON Phosphoenolpyruvate carboxylase - Shewanella oneidensis|
          Length = 881

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 33/140 (23%), Positives = 57/140 (40%)
 Frame = +1

Query: 10  ELSNFRMLIPFLAQTSHTTRPVANCSRLHRRHPARNFGRYCRWWGARSKAIHSPRSVFGP 189
           ELSN R LIP   Q S     V N  RL  +HPA+  G Y     ++   + +   +   
Sbjct: 432 ELSNRRPLIPSNWQPSADVAEVLNTCRLIAKHPAKALGSYVISMASKPSDVLTVLLLLKE 491

Query: 190 TNGASPSDIVKKRKIVEHIILLRAKPNISDAEEKDMLDYLYTSQYQMRGILTVSLGRIED 369
           T    P  +V   + +  +       N + A   D+LD  +   Y  +G+  V +G  + 
Sbjct: 492 TGCTHPMRVVPLFETLSDL-------NNAAACITDLLDIDWYRGY-TKGMQEVMIGYSDS 543

Query: 370 PNSENFTHAVFIRFQQKEDI 429
                   A + +++ +E +
Sbjct: 544 AKDAGVMAAAWAQYRAQEQL 563



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>P06293:PRTZ_HORVU Protein Z - Hordeum vulgare (Barley)|
          Length = 399

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 53  PLILHVLLRIVLGFIAATRHGISADIVDGGGQEARQFIPLA 175
           PL LHV L ++    AATR  + A + DGG  +A++   LA
Sbjct: 42  PLSLHVALSLITAGAAATRDQLVAILGDGGAGDAKELNALA 82



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>Q96PK2:MACF4_HUMAN Microtubule-actin cross-linking factor 1, isoform 4 - Homo sapiens|
            (Human)
          Length = 5938

 Score = 32.0 bits (71), Expect = 5.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = +1

Query: 724  DSLYSHAAVIRFPSI---------DDFKLFKESTEYKNMCVSKLQPVTERCLELHFVVDP 876
            + + SH   +RF +I         + FK  KE +E  N+   KL+  TER   LH     
Sbjct: 2365 EDVISHKGDLRFVTISGQKVLDMENSFKEGKEPSEIGNLVKDKLKDATERYTALHSKCTR 2424

Query: 877  VGNQLM*ILG 906
            +G+ L  +LG
Sbjct: 2425 LGSHLNMLLG 2434



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>Q9UPN3:MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 - Homo|
            sapiens (Human)
          Length = 5430

 Score = 32.0 bits (71), Expect = 5.2
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = +1

Query: 724  DSLYSHAAVIRFPSI---------DDFKLFKESTEYKNMCVSKLQPVTERCLELHFVVDP 876
            + + SH   +RF +I         + FK  KE +E  N+   KL+  TER   LH     
Sbjct: 1863 EDVISHKGDLRFVTISGQKVLDMENSFKEGKEPSEIGNLVKDKLKDATERYTALHSKCTR 1922

Query: 877  VGNQLM*ILG 906
            +G+ L  +LG
Sbjct: 1923 LGSHLNMLLG 1932


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 221,827,357
Number of extensions: 5037255
Number of successful extensions: 11834
Number of sequences better than 10.0: 5
Number of HSP's gapped: 11833
Number of HSP's successfully gapped: 5
Length of query: 399
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 284
Effective length of database: 69,142,514
Effective search space: 19636473976
Effective search space used: 19636473976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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