ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf62h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P20863:GDF1_MOUSE Embryonic growth/differentiation factor 1 prec... 31 6.8
2O74419:YQ52_SCHPO Uncharacterized protein C162.02c - Schizosacch... 30 8.8
3Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 -... 30 8.8

>P20863:GDF1_MOUSE Embryonic growth/differentiation factor 1 precursor - Mus musculus|
           (Mouse)
          Length = 357
 Score = 30.8 bits (68), Expect = 6.8
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
 Frame = +2

Query: 218 ESGRRGRCRGR--HTSSPSKGWEEIRRGWTPAPRG-------------ATSRAPEGMTAR 352
           E G  G CR R  H S    GW      W  APRG              T R P G  A 
Sbjct: 244 EVGPVGTCRTRRLHVSFREVGWHR----WVIAPRGFLANFCQGTCALPETLRGPGGPPAL 299

Query: 353 SRSMQWLNRQARRPSSGDWQPGCTP 427
           + ++      A  P+ G   P C P
Sbjct: 300 NHAVLRALMHAAAPTPGAGSPCCVP 324



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>O74419:YQ52_SCHPO Uncharacterized protein C162.02c - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 981

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 10  SIVYRRPAHTSSKRAQREVEEDTDARGEMGSRLDARTLKDEVASMDRRPLLDLGHPLLNR 189
           S++  +  +  S   Q+EVE D D +    S      L   VA +  R + DLGHPL+  
Sbjct: 761 SVMGPKALYFISGGGQQEVELDDDTQSAKAS---GYALSKYVAELLCRKISDLGHPLIYV 817

Query: 190 VADSFI 207
           +   FI
Sbjct: 818 IRPGFI 823



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>Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 - Mus musculus (Mouse)|
          Length = 2703

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
 Frame = +2

Query: 221 SGRRGRCRGRH--TSSPSKGWEEIRRGW----TPAPRGATSRAPEGMTARSRSMQWLNRQ 382
           S RRGR   R   T   S+     RRG     TPA R + SR P    +RSR+     R 
Sbjct: 553 SARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRS 612

Query: 383 ARRPSSGDWQPGCTPG*RTA*ERPEGTMTGRT-----AR*QGRS 499
             R  +       +P  R +  R +   +GR+     AR  GRS
Sbjct: 613 RSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRS 656


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 125,237,808
Number of extensions: 2678617
Number of successful extensions: 7782
Number of sequences better than 10.0: 3
Number of HSP's gapped: 7772
Number of HSP's successfully gapped: 3
Length of query: 275
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 163
Effective length of database: 69,965,399
Effective search space: 11404360037
Effective search space used: 11404360037
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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