ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf62h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds Length = 777 Score = 955 bits (482), Expect = 0.0 Identities = 642/692 (92%), Gaps = 4/692 (0%) Strand = Plus / Minus Query: 88 ggagagatgggcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggac 147 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 727 ggagagatgggcagcaggcttgacgcgcgcacgctcaaggacgaggtggcgagcatggac 668 Query: 148 cggcgcccgctcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatc 207 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 667 cggcgcccgctcctcgacctcggccacccgctgctcaaccgcgtcgccgacagcttcatc 608 Query: 208 cgcgccgccggagtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtc 267 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| Sbjct: 607 cgcgccgccggagtcggagcggcgagggctgtgtcgcgggaggcatacttcgtcnccgtc 548 Query: 268 gaagggatgggaggagattcgacggggctggacaccagcgccaagaggagcaacttctcg 327 ||||||||||||||||| |||||||||||||||| || ||||||||||||| | |||||| Sbjct: 547 gaagggatgggaggagactcgacggggctggacagcaccgccaagaggagccatttctcg 488 Query: 328 agcgccagaggggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaag 387 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 487 agcgccagaggggatgacggccagaagtcgctcgattcagtggttaaatcggcaagcaag 428 Query: 388 gaggccatccagtggggattggcagccggggtgtactccgggataacgtacggcctgaga 447 ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 427 gaggccatccagtggggattggcagccggagtctactctgggataacgtacggcctgaga 368 Query: 448 gaggccagagggcaccatgactggaagaacagcgcgatagcaggggcgatcgccggagca 507 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 gaggccagaggacaccatgactggaagaacagcgcgatagcaggggcgatcgccggagcg 308 Query: 508 gccgtcgcgctgacaggggacaacgggcactccgaccacgtcgtccatttcgccatcacc 567 || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 307 gcagtcgccctgaccggggacaacgggcactccgaccacgtcgttcatttcgccatcacc 248 Query: 568 ggagccgcactgtcgagcgcggcgaccatgctctcaggcatattctaagccatggagcgt 627 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| Sbjct: 247 ggagccgcactgtcgagcgcggcgaccatgctctccggcatattctaagcagcggaacgt 188 Query: 628 ggggctagggctaaagaaattcggagcagctcttgaaatgt-gta--gcgttccccttga 684 ||||| |||||| |||||||| |||||| | ||||||| || ||| | || ||||| | Sbjct: 187 ggggcgagggct-aagaaatttggagcaacacttgaaacgtagtactgtatttcccttaa 129 Query: 685 tttctccatgtaccttcgacactttgcgcgctctgccccatctgctagccatccctgcaa 744 |||||||||||||||| |||| |||| |||||||| ||||||||||||| | ||||| | Sbjct: 128 tttctccatgtacctttgacagtttgtgcgctctgtcccatctgctagctagtcctgcca 69 Query: 745 ctgagcaagtccgaatctcgttagaatttctc 776 | ||||||||||||| ||||||||||||||| Sbjct: 68 ccaagcaagtccgaatttcgttagaatttctc 37
>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA, complete cds Length = 819 Score = 670 bits (338), Expect = 0.0 Identities = 473/518 (91%) Strand = Plus / Plus Query: 98 gcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgc 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 gcagcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgc 137 Query: 158 tcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccg 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tcctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccg 197 Query: 218 gagtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtcgaagggatgg 277 | ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 198 gtgtcggagcggcgagggctgtgtcgcgggaggcctacttcgtcaccgtcgaagggatgg 257 Query: 278 gaggagattcgacggggctggacaccagcgccaagaggagcaacttctcgagcgccagag 337 ||||||| || || |||||||| | || ||||||||||||| | |||||||||||||||| Sbjct: 258 gaggagactccacagggctggatagcaacgccaagaggagccatttctcgagcgccagag 317 Query: 338 gggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaaggaggccatcc 397 ||||||| |||||||||||| |||| | |||||| |||||||| |||||||||||| ||| Sbjct: 318 gggatgatggccagaagtcgttcgaagtagtggtcaaatcggccggcaaggaggccttcc 377 Query: 398 agtggggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagag 457 ||||||| || |||||||| ||||||||||| | || ||||| ||||| |||||||||| Sbjct: 378 agtgggggttagcagccggagtgtactccggattgacctacggtctgagggaggccagag 437 Query: 458 ggcaccatgactggaagaacagcgcgatagcaggggcgatcgccggagcagccgtcgcgc 517 || ||||||||||||||||||||| || || || || | |||||||| || ||||| | Sbjct: 438 ggtgccatgactggaagaacagcgcaatcgctggtgcactagccggagccgcggtcgccc 497 Query: 518 tgacaggggacaacgggcactccgaccacgtcgtccatttcgccatcaccggagccgcac 577 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 498 tgaccggggacaacgggcattccgaccacgtcgtccatttcgccatcaccggagccgcac 557 Query: 578 tgtcgagcgcggcgaccatgctctcaggcatattctaa 615 |||| ||||||||||||||||| || |||||||||||| Sbjct: 558 tgtcaagcgcggcgaccatgctttccggcatattctaa 595
>dbj|AK242170.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075157P20, full insert sequence Length = 866 Score = 392 bits (198), Expect = e-106 Identities = 419/493 (84%), Gaps = 6/493 (1%) Strand = Plus / Plus Query: 118 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 177 ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 118 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 177 Query: 178 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 237 ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 178 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 237 Query: 238 gtgtcgcgggaggcatacttcgtcaccgtcgaagggatgggaggagattcgacggggctg 297 || ||||||||||| ||||| ||||||||||||||| | ||||| || || | |||||| Sbjct: 238 gtctcgcgggaggcctactttgtcaccgtcgaagggcttggaggggacacggccgggctg 297 Query: 298 gacaccagcgccaagaggagcaacttctcgagcgccagaggggatgacggccagaagtcg 357 |||| | || |||||||||||| |||||||| ||||||||| |||||||||||| Sbjct: 298 gacaacgccgtcaagaggagcaatttctcgag------aggggatgatggccagaagtcg 351 Query: 358 ctcgatgcagtggttaaatcggcaggcaaggaggccatccagtggggattggcagccggg 417 || ||||| ||||| ||||| || || |||||||| |||||||||||||||| |||||| Sbjct: 352 cttgatgccgtggtaaaatccgctgggaaggaggctttccagtggggattggcggccggg 411 Query: 418 gtgtactccgggataacgtacggcctgagagaggccagagggcaccatgactggaagaac 477 |||||||| || | ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 412 gtgtactctggactgacgtacggcctgagagaggccagagggtgccatgactggaagaac 471 Query: 478 agcgcgatagcaggggcgatcgccggagcagccgtcgcgctgacaggggacaacgggcac 537 || ||| | || || |||||||| || | || || |||||||| ||||||| |||| || Sbjct: 472 agtgcggtcgccggcgcgatcgctggcgtggcggtggcgctgacgggggacaccgggaac 531 Query: 538 tccgaccacgtcgtccatttcgccatcaccggagccgcactgtcgagcgcggcgaccatg 597 |||||||| | |||||||||||||||||||| ||||| || || || ||||||| | || Sbjct: 532 gccgaccacatggtccatttcgccatcaccggcgccgcgctttccagtgcggcgagcctg 591 Query: 598 ctctcaggcatat 610 ||||| ||||||| Sbjct: 592 ctctccggcatat 604
>ref|NM_001049368.1| Oryza sativa (japonica cultivar-group) Os01g0303300 (Os01g0303300) mRNA, complete cds Length = 792 Score = 392 bits (198), Expect = e-106 Identities = 419/493 (84%), Gaps = 6/493 (1%) Strand = Plus / Plus Query: 118 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 177 ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 301 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 360 Query: 178 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 237 ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 361 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 420 Query: 238 gtgtcgcgggaggcatacttcgtcaccgtcgaagggatgggaggagattcgacggggctg 297 || ||||||||||| ||||| ||||||||||||||| | ||||| || || | |||||| Sbjct: 421 gtctcgcgggaggcctactttgtcaccgtcgaagggcttggaggggacacggccgggctg 480 Query: 298 gacaccagcgccaagaggagcaacttctcgagcgccagaggggatgacggccagaagtcg 357 |||| | || |||||||||||| |||||||| ||||||||| |||||||||||| Sbjct: 481 gacaacgccgtcaagaggagcaatttctcgag------aggggatgatggccagaagtcg 534 Query: 358 ctcgatgcagtggttaaatcggcaggcaaggaggccatccagtggggattggcagccggg 417 || ||||| ||||| ||||| || || |||||||| |||||||||||||||| |||||| Sbjct: 535 cttgatgccgtggtaaaatccgctgggaaggaggctttccagtggggattggcggccggg 594 Query: 418 gtgtactccgggataacgtacggcctgagagaggccagagggcaccatgactggaagaac 477 |||||||| || | ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 595 gtgtactctggactgacgtacggcctgagagaggccagagggtgccatgactggaagaac 654 Query: 478 agcgcgatagcaggggcgatcgccggagcagccgtcgcgctgacaggggacaacgggcac 537 || ||| | || || |||||||| || | || || |||||||| ||||||| |||| || Sbjct: 655 agtgcggtcgccggcgcgatcgctggcgtggcggtggcgctgacgggggacaccgggaac 714 Query: 538 tccgaccacgtcgtccatttcgccatcaccggagccgcactgtcgagcgcggcgaccatg 597 |||||||| | |||||||||||||||||||| ||||| || || || ||||||| | || Sbjct: 715 gccgaccacatggtccatttcgccatcaccggcgccgcgctttccagtgcggcgagcctg 774 Query: 598 ctctcaggcatat 610 ||||| ||||||| Sbjct: 775 ctctccggcatat 787
>gb|DQ245984.1| Zea mays clone 93911 mRNA sequence Length = 848 Score = 234 bits (118), Expect = 4e-58 Identities = 333/404 (82%), Gaps = 3/404 (0%) Strand = Plus / Plus Query: 100 agcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgctc 159 |||| ||| ||| |||| ||||||||||||||| || ||||||||||| || ||| Sbjct: 117 agcacgctggacacgcggacgctcaaggacgagctgacgagcatggacaggaagtgcctc 176 Query: 160 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccgga 219 | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 177 gtggaccttggccacccgctgctcaaccgcgtcgccgacagcttcatccgcgccgccggg 236 Query: 220 gtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtcgaagggatggga 279 ||||||||||| ||||| || || ||||||| ||| ||||||||||||||||| | | Sbjct: 237 gtcggggcggccagggccgtctccagggaggcctacgtcgtcaccgtcgaagggctttca 296 Query: 280 ggagattcgacggggctggacac---cagcgccaagaggagcaacttctcgagcgccaga 336 ||||| ||| | ||||||||| | | ||| |||| ||||| | ||||| ||| |||| Sbjct: 297 ggagactcgtccgggctggacgccgacggcggcaagcggagccatttctccagcatcaga 356 Query: 337 ggggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaaggaggccatc 396 || || |||||||||| ||||||||| |||||||| ||| |||| |||||||||||| || Sbjct: 357 ggtgacgacggccagaggtcgctcgacgcagtggtaaaaacggccggcaaggaggccttc 416 Query: 397 cagtggggattggcagccggggtgtactccgggataacgtacggcctgagagaggccaga 456 |||||||| ||||||||||| || ||||| ||| | ||||||| ||| | |||||||| Sbjct: 417 cagtgggggttggcagccggagtctactctgggctcacgtacgcgctgcgggaggccagg 476 Query: 457 gggcaccatgactggaagaacagcgcgatagcaggggcgatcgc 500 || ||| ||||||||||||||||| || ||||| || ||||| Sbjct: 477 ggatgccacgactggaagaacagcgccatcgcaggcgccatcgc 520
>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence Length = 868 Score = 230 bits (116), Expect = 6e-57 Identities = 420/520 (80%), Gaps = 6/520 (1%) Strand = Plus / Plus Query: 100 agcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgctc 159 |||| ||| ||| |||| ||||||||||||||| || ||||||||||| || ||| Sbjct: 107 agcacgctggacacgcggacgctcaaggacgagctgacgagcatggacaggaagtgcctc 166 Query: 160 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttcatccgcgccgccgga 219 | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 167 gtggacctcggccacccgctgctcaaccgcgtcgccgacagcttcatccgcgccgctggg 226 Query: 220 gtcggggcggcgagggcggtgtcgcgggaggcatacttcgtcaccgtcgaagggatggga 279 ||||||||||| ||||| || || ||||||| ||| ||||||||||||||||| | | Sbjct: 227 gtcggggcggccagggccgtctccagggaggcctacgtcgtcaccgtcgaagggctttca 286 Query: 280 ggagattcgacggggctggacac---cagcgccaagaggagcaacttctcgagcgccaga 336 ||||| ||| | ||||| ||| | | ||| |||| ||||| | ||||| ||| |||| Sbjct: 287 ggagactcgtccgggctagacgccgacggcggcaagcggagccatttctccagcatcaga 346 Query: 337 ggggatgacggccagaagtcgctcgatgcagtggttaaatcggcaggcaaggaggccatc 396 || || |||||||||| ||||||||| |||||||| ||| |||| |||||||||||| || Sbjct: 347 ggtgacgacggccagaggtcgctcgacgcagtggtaaaaacggccggcaaggaggccttc 406 Query: 397 cagtggggattggcagccggggtgtactccgggataacgtacggcctgagagaggccaga 456 |||||||| ||||||||||| || ||||| ||| | ||||||| ||| | |||||||| Sbjct: 407 cagtgggggttggcagccggagtctactcagggctcacgtacgcgctgcgggaggccagg 466 Query: 457 gggcaccatgactggaagaacagcgcgatagcaggggcgatcgccggagcagccgtcgcg 516 || ||| ||||||||||||||||| || ||||| || ||||| || || || || ||| Sbjct: 467 ggatgccacgactggaagaacagcgccatcgcaggcgccatcgctggggcggcggtggcg 526 Query: 517 ctgacagggga---caacgggcactccgaccacgtcgtccatttcgccatcaccggagcc 573 || || || || | ||| ||||||||| | ||||| | |||||||||||||| ||| Sbjct: 527 ctcacgggtgacgccggcggccactccgacaagctcgtcaacttcgccatcaccggcgcc 586 Query: 574 gcactgtcgagcgcggcgaccatgctctcaggcatattct 613 || || || ||||| | || | ||||||| |||||||||| Sbjct: 587 gcgctctccagcgccgggagcttgctctccggcatattct 626
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 188 bits (95), Expect = 2e-44 Identities = 140/155 (90%) Strand = Plus / Minus Query: 118 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 177 ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 11221429 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 11221370 Query: 178 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 237 ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 11221369 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 11221310 Query: 238 gtgtcgcgggaggcatacttcgtcaccgtcgaagg 272 || ||||||||||| ||||| |||||||||||||| Sbjct: 11221309 gtctcgcgggaggcctactttgtcaccgtcgaagg 11221275 Score = 81.8 bits (41), Expect = 4e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 514 gcgctgacaggggacaacgggcactccgaccacgtcgtccatttcgccatcaccggagcc 573 |||||||| ||||||| |||| || |||||||| | |||||||||||||||||||| ||| Sbjct: 11220280 gcgctgacgggggacaccgggaacgccgaccacatggtccatttcgccatcaccggcgcc 11220221 Query: 574 gcactgtcgagcgcggcgaccatgctctcaggcatat 610 || || || || ||||||| | ||||||| ||||||| Sbjct: 11220220 gcgctttccagtgcggcgagcctgctctccggcatat 11220184 Score = 81.8 bits (41), Expect = 4e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 403 ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 462 |||||||| |||||||||||||| || | ||||||||||||||||||||||||||| | Sbjct: 11220498 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 11220439 Query: 463 catgactgg 471 ||||||||| Sbjct: 11220438 catgactgg 11220430 Score = 48.1 bits (24), Expect = 0.050 Identities = 33/36 (91%) Strand = Plus / Minus Query: 336 aggggatgacggccagaagtcgctcgatgcagtggt 371 ||||||||| |||||||||||||| ||||| ||||| Sbjct: 11220768 aggggatgatggccagaagtcgcttgatgccgtggt 11220733
>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146F03 Length = 137047 Score = 188 bits (95), Expect = 2e-44 Identities = 140/155 (90%) Strand = Plus / Minus Query: 118 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 177 ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 113222 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 113163 Query: 178 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 237 ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 113162 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 113103 Query: 238 gtgtcgcgggaggcatacttcgtcaccgtcgaagg 272 || ||||||||||| ||||| |||||||||||||| Sbjct: 113102 gtctcgcgggaggcctactttgtcaccgtcgaagg 113068 Score = 81.8 bits (41), Expect = 4e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 514 gcgctgacaggggacaacgggcactccgaccacgtcgtccatttcgccatcaccggagcc 573 |||||||| ||||||| |||| || |||||||| | |||||||||||||||||||| ||| Sbjct: 112073 gcgctgacgggggacaccgggaacgccgaccacatggtccatttcgccatcaccggcgcc 112014 Query: 574 gcactgtcgagcgcggcgaccatgctctcaggcatat 610 || || || || ||||||| | ||||||| ||||||| Sbjct: 112013 gcgctttccagtgcggcgagcctgctctccggcatat 111977 Score = 81.8 bits (41), Expect = 4e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 403 ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 462 |||||||| |||||||||||||| || | ||||||||||||||||||||||||||| | Sbjct: 112291 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 112232 Query: 463 catgactgg 471 ||||||||| Sbjct: 112231 catgactgg 112223 Score = 48.1 bits (24), Expect = 0.050 Identities = 33/36 (91%) Strand = Plus / Minus Query: 336 aggggatgacggccagaagtcgctcgatgcagtggt 371 ||||||||| |||||||||||||| ||||| ||||| Sbjct: 112561 aggggatgatggccagaagtcgcttgatgccgtggt 112526
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 188 bits (95), Expect = 2e-44 Identities = 140/155 (90%) Strand = Plus / Minus Query: 118 acgctcaaggacgaggtggcgagcatggaccggcgcccgctcctcgacctcggccacccg 177 ||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 8834 acgctcaaggaggaggtggcgagcatggacaagcggtggctcgtcgacctcggccacccg 8775 Query: 178 ctcctcaaccgcgtcgccgacagcttcatccgcgccgccggagtcggggcggcgagggcg 237 ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 8774 ctcgtcaaccgcgtcgccgacagcttcatccgcgccgccggcgtcggggccgcgcgggcc 8715 Query: 238 gtgtcgcgggaggcatacttcgtcaccgtcgaagg 272 || ||||||||||| ||||| |||||||||||||| Sbjct: 8714 gtctcgcgggaggcctactttgtcaccgtcgaagg 8680 Score = 81.8 bits (41), Expect = 4e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 514 gcgctgacaggggacaacgggcactccgaccacgtcgtccatttcgccatcaccggagcc 573 |||||||| ||||||| |||| || |||||||| | |||||||||||||||||||| ||| Sbjct: 7685 gcgctgacgggggacaccgggaacgccgaccacatggtccatttcgccatcaccggcgcc 7626 Query: 574 gcactgtcgagcgcggcgaccatgctctcaggcatat 610 || || || || ||||||| | ||||||| ||||||| Sbjct: 7625 gcgctttccagtgcggcgagcctgctctccggcatat 7589 Score = 81.8 bits (41), Expect = 4e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 403 ggattggcagccggggtgtactccgggataacgtacggcctgagagaggccagagggcac 462 |||||||| |||||||||||||| || | ||||||||||||||||||||||||||| | Sbjct: 7903 ggattggcggccggggtgtactctggactgacgtacggcctgagagaggccagagggtgc 7844 Query: 463 catgactgg 471 ||||||||| Sbjct: 7843 catgactgg 7835 Score = 48.1 bits (24), Expect = 0.050 Identities = 33/36 (91%) Strand = Plus / Minus Query: 336 aggggatgacggccagaagtcgctcgatgcagtggt 371 ||||||||| |||||||||||||| ||||| ||||| Sbjct: 8173 aggggatgatggccagaagtcgcttgatgccgtggt 8138
>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence Length = 802 Score = 89.7 bits (45), Expect = 1e-14 Identities = 291/375 (77%), Gaps = 6/375 (1%) Strand = Plus / Minus Query: 245 gggaggcatacttcgtcaccgtcgaagggatgggaggagattcgacggggctggacacca 304 ||||||| ||| ||||||||||||||||| | |||||| ||| | ||||| ||| || Sbjct: 566 gggaggcctacgtcgtcaccgtcgaagggctttcaggagactcgtccgggctagacgccg 507 Query: 305 ---gcgccaagaggagcaacttctcgagcgccagaggggatgacggccagaagtcgctcg 361 ||| |||| ||||| | ||||| ||| |||||| || |||||||||| |||||||| Sbjct: 506 acggcggcaagcggagccatttctccagcatcagaggtgacgacggccagaggtcgctcg 447 Query: 362 atgcagtggttaaatcggcaggcaaggaggccatccagtggggattggcagccggggtgt 421 | |||||||| |||| |||||||||||| |||||| ||||||||||| || | Sbjct: 446 acgcagtggtnnnnncggccggcaaggaggccttccagtnnnnnttggcagccggagtct 387 Query: 422 actccgggataacgtacggcctgagagaggccagagggcaccatgactggaagaacagcg 481 |||| ||| | ||||||| ||| | |||||||| || ||| |||||||||||||||| Sbjct: 386 actcagggctcacgtacgcgctgcgggaggccaggggatgccacgactggaagaacagcg 327 Query: 482 cgatagcaggggcgatcgccggagcagccgtcgcgctgacagggga---caacgggcact 538 | || ||||| || ||||| || || || || ||||| || || || | ||| |||| Sbjct: 326 ccatcgcaggcgccatcgctggggcggcggtagcgctcacgggtgacgccggcggccact 267 Query: 539 ccgaccacgtcgtccatttcgccatcaccggagccgcactgtcgagcgcggcgaccatgc 598 ||||| | ||||| | |||||||||||||| ||||| || || ||||| | || | ||| Sbjct: 266 ccgacaagctcgtcaacttcgccatcaccggcgccgcgctctccagcgccgggagcttgc 207 Query: 599 tctcaggcatattct 613 |||| |||||||||| Sbjct: 206 tctccggcatattct 192 Score = 83.8 bits (42), Expect = 9e-13 Identities = 90/106 (84%) Strand = Plus / Minus Query: 100 agcaggctcgacgcgcgcacgctcaaggacgaggtggcgagcatggaccggcgcccgctc 159 |||| ||| ||| |||| ||||||||||||||| || ||||||||||| || ||| Sbjct: 711 agcacgctggacacgcggacgctcaaggacgagctgacgagcatggacaggaagtgcctc 652 Query: 160 ctcgacctcggccacccgctcctcaaccgcgtcgccgacagcttca 205 | ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 651 gtggacctcggccacccgctgctcaaccgcgtcgccgacagcttca 606
>ref|NM_001056419.1| Oryza sativa (japonica cultivar-group) Os03g0305600 (Os03g0305600) mRNA, complete cds Length = 839 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 161 tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 204 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 221
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 161 tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 204 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 34365 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 34322
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 161 tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 204 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 10818666
>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full insert sequence Length = 839 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Plus Query: 161 tcgacctcggccacccgctcctcaaccgcgtcgccgacagcttc 204 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 178 tcgacctcggccacccgctcctcaaccgcgtcgccgagagcttc 221
>gb|DQ245560.1| Zea mays clone 17480 mRNA sequence Length = 896 Score = 67.9 bits (34), Expect = 5e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 163 gacctcggccacccgctcctcaaccgcgtcgccgacagcttc 204 |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 133 gacctcggccacccgctcctgaaccgcgtcgccgagagcttc 174
>gb|DQ272520.1| Streptomyces aculeolatus A gene locus, complete sequence Length = 50114 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Minus Query: 156 gctcctcgacctcggccacccgctcc 181 |||||||||||||||||||| ||||| Sbjct: 14458 gctcctcgacctcggccaccagctcc 14433
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 gaggtagaagaagacacggacg 82 |||||||||||||||||||||| Sbjct: 199904 gaggtagaagaagacacggacg 199883
>ref|XM_569079.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB00700) partial mRNA Length = 5953 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 gaggtagaagaagacacggacg 82 |||||||||||||||||||||| Sbjct: 977 gaggtagaagaagacacggacg 956
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 acgggcactccgaccacgtcg 550 ||||||||||||||||||||| Sbjct: 1947745 acgggcactccgaccacgtcg 1947765
>emb|CT971478.3| Pan troglodytes chromosome X clone CH251-551H02 map Xq28, complete sequence Length = 207781 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 142703 ggcctgagagaggcctgagggcacc 142727
>ref|XM_001226815.1| Chaetomium globosum CBS 148.51 phosphoenolpyruvate carboxykinase (CHGG_08889) mRNA, complete cds Length = 1620 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 ctcctcgacctcggccacccg 177 ||||||||||||||||||||| Sbjct: 65 ctcctcgacctcggccacccg 85
>emb|CT574564.2| Pan troglodytes chromosome X clone PTB-143A20 map Xq28, complete sequence Length = 156098 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 91446 ggcctgagagaggcctgagggcacc 91470
>gb|AC144384.4| Pan troglodytes BAC clone CH251-456K17 from X, complete sequence Length = 220712 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 122566 ggcctgagagaggcctgagggcacc 122590
>gb|AC145689.4| Pan troglodytes BAC clone CH251-184I22 from X, complete sequence Length = 181915 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 75875 ggcctgagagaggcctgagggcacc 75851
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 gggcggcgagggcggtgtcgc 244 ||||||||||||||||||||| Sbjct: 308672 gggcggcgagggcggtgtcgc 308692
>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 324604 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 76976 ggcctgagagaggcccgagggcacc 76952
>gb|AF002997.4| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 245179 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 439 ggcctgagagaggccagagggcacc 463 ||||||||||||||| ||||||||| Sbjct: 143178 ggcctgagagaggcccgagggcacc 143202
>emb|BX510956.6| Mouse DNA sequence from clone RP24-284A5 on chromosome 2, complete sequence Length = 54789 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 791 aatcttgaaatgtgttttatctatg 815 |||||||||||| |||||||||||| Sbjct: 47513 aatcttgaaatgcgttttatctatg 47489
>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel protein Length = 674 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 161 tcgacctcggccacccgctcctcaaccgc 189 ||||||||||| ||||||| ||||||||| Sbjct: 82 tcgacctcggcaacccgctgctcaaccgc 110 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 117,294,253 Number of extensions: 6013663 Number of successful extensions: 115569 Number of sequences better than 10.0: 29 Number of HSP's gapped: 115563 Number of HSP's successfully gapped: 50 Length of query: 827 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 805 Effective length of database: 18,508,616,841 Effective search space: 14899436557005 Effective search space used: 14899436557005 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
